Wall clock time and date at job start Mon Mar 30 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53003 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47122 * 299.99791 * 4 3 2 6 6 O 1.42904 * 109.46956 * 179.97438 * 5 4 3 7 7 C 1.42899 * 113.99774 * 150.00403 * 6 5 4 8 8 C 1.53037 * 109.46152 * 150.00121 * 7 6 5 9 9 C 1.53194 * 109.31665 * 181.37067 * 8 7 6 10 10 N 1.46927 * 108.77332 * 305.36499 * 9 8 7 11 11 C 1.36933 * 120.62742 * 233.32862 * 10 9 8 12 12 H 1.08008 * 119.99663 * 151.88130 * 11 10 9 13 13 C 1.38805 * 120.00459 * 331.88447 * 11 10 9 14 14 N 1.31622 * 119.99962 * 343.12018 * 13 11 10 15 15 Si 1.86795 * 120.00332 * 163.12475 * 13 11 10 16 16 H 1.48496 * 109.47227 * 59.99553 * 15 13 11 17 17 H 1.48505 * 109.47370 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47123 * 299.99866 * 15 13 11 19 19 C 1.46927 * 118.73757 * 53.60733 * 10 9 8 20 20 C 1.53042 * 109.44771 * 270.05849 * 7 6 5 21 21 C 1.52998 * 109.46968 * 60.00133 * 5 4 3 22 22 C 1.52993 * 109.47173 * 299.99902 * 21 5 4 23 23 H 1.09004 * 109.47398 * 59.99853 * 1 2 3 24 24 H 1.08998 * 109.47649 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47202 * 300.00040 * 1 2 3 26 26 H 1.09006 * 109.47067 * 240.00319 * 2 1 3 27 27 H 1.09000 * 109.47690 * 60.00355 * 3 2 1 28 28 H 1.09000 * 109.47217 * 299.99852 * 3 2 1 29 29 H 1.09007 * 109.46988 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.47122 * 60.00337 * 4 3 2 31 31 H 1.08994 * 109.47514 * 299.99843 * 5 4 3 32 32 H 1.09003 * 109.46228 * 30.02800 * 7 6 5 33 33 H 1.08998 * 109.49912 * 61.41523 * 8 7 6 34 34 H 1.09001 * 109.52406 * 301.33708 * 8 7 6 35 35 H 1.08994 * 109.58638 * 185.57412 * 9 8 7 36 36 H 1.08999 * 109.69948 * 65.22024 * 9 8 7 37 37 H 0.96995 * 120.00418 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.59069 * 66.17922 * 19 10 9 39 39 H 1.08998 * 109.58537 * 186.60221 * 19 10 9 40 40 H 1.09000 * 109.49938 * 298.57350 * 20 7 6 41 41 H 1.09003 * 109.49272 * 58.64095 * 20 7 6 42 42 H 1.09006 * 109.46863 * 59.99708 * 21 5 4 43 43 H 1.08996 * 109.47151 * 179.97438 * 21 5 4 44 44 H 1.08999 * 109.47202 * 300.00040 * 22 21 5 45 45 H 1.09008 * 109.47592 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7211 1.2483 6 8 5.5095 0.7205 1.2473 7 6 6.0915 0.7203 2.5524 8 6 7.4402 -0.0016 2.5091 9 6 8.0453 -0.0300 3.9162 10 7 8.1131 1.3450 4.4295 11 6 9.2923 1.8557 4.9026 12 1 9.4798 2.9181 4.8513 13 6 10.2466 1.0080 5.4480 14 7 9.9109 -0.2097 5.8178 15 14 12.0074 1.5955 5.6571 16 1 12.0306 2.7827 6.5487 17 1 12.8235 0.5098 6.2578 18 1 12.5680 1.9611 4.3314 19 6 6.8902 2.1595 4.4314 20 6 6.2983 2.1633 3.0184 21 6 3.5705 -0.7214 1.2483 22 6 2.0405 -0.7214 1.2489 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9333 2.4702 -0.0002 30 1 3.9329 0.9288 -0.8909 31 1 3.7176 1.2347 2.1385 32 1 5.4266 0.2062 3.2465 33 1 8.1139 0.5261 1.8340 34 1 7.2959 -1.0222 2.1546 35 1 9.0484 -0.4543 3.8741 36 1 7.4200 -0.6348 4.5729 37 1 10.5776 -0.8019 6.1993 38 1 6.1687 1.7339 5.1287 39 1 7.1313 3.1799 4.7293 40 1 6.9827 2.6707 2.3386 41 1 5.3405 2.6838 3.0262 42 1 3.9334 -1.2351 0.3580 43 1 3.9345 -1.2355 2.1378 44 1 1.6776 -0.2077 2.1391 45 1 1.6771 -1.7491 1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335952817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:51 Heat of formation + Delta-G solvation = -61.906172 kcal Electronic energy + Delta-G solvation = -21343.002742 eV Core-core repulsion = 18359.447703 eV Total energy + Delta-G solvation = -2983.555038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.43294 -37.75396 -35.83848 -32.71884 -31.51388 -30.88117 -30.06488 -29.37153 -26.02004 -24.74416 -22.85587 -22.17772 -21.79916 -21.02385 -19.89830 -19.08813 -16.82143 -16.51676 -15.54515 -14.86175 -14.51440 -14.40162 -14.24388 -13.84142 -13.48135 -13.41922 -13.20360 -12.97358 -12.79313 -12.34531 -12.28703 -12.00993 -11.80069 -11.40774 -11.24045 -11.13493 -10.97547 -10.79419 -10.70212 -10.67519 -10.53679 -10.26546 -10.21480 -10.17685 -9.94513 -9.67113 -9.51394 -8.86373 -8.43736 -6.67058 -5.77727 -3.20185 3.40161 3.45675 3.47524 3.94825 4.51404 4.56153 4.58765 4.76502 5.04995 5.08887 5.29780 5.33635 5.36675 5.40733 5.41998 5.43205 5.49110 5.59055 5.62999 5.65377 5.72649 5.76226 5.85544 5.93972 5.99070 6.02160 6.09871 6.13714 6.16951 6.30824 6.34551 6.36413 6.51822 6.61711 6.65882 6.73303 6.82955 7.00820 7.38828 7.62433 7.77161 7.81843 8.46798 9.22573 9.85778 10.42843 11.31229 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050036 B = 0.003653 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.465127 B = 7662.305571 C = 7832.673631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.111 4.111 4 C -0.115 4.115 5 C 0.091 3.909 6 O -0.383 6.383 7 C 0.099 3.901 8 C -0.135 4.135 9 C 0.174 3.826 10 N -0.593 5.593 11 C -0.253 4.253 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.904 3.096 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.147 3.853 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.111 4.111 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.018 0.982 37 H 0.255 0.745 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.634 0.129 -10.746 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.148 4.148 4 C -0.153 4.153 5 C 0.033 3.967 6 O -0.302 6.302 7 C 0.042 3.958 8 C -0.174 4.174 9 C 0.048 3.952 10 N -0.316 5.316 11 C -0.383 4.383 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.021 3.979 20 C -0.191 4.191 21 C -0.179 4.179 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.402 0.007 -10.812 19.645 hybrid contribution 0.742 0.202 0.398 0.866 sum -15.660 0.209 -10.414 18.808 Atomic orbital electron populations 1.21830 0.95389 1.01572 1.01656 1.21180 0.95220 0.96245 0.98678 1.21564 0.94958 0.96318 1.01996 1.21577 0.94815 1.00874 0.98036 1.21996 0.82135 0.94679 0.97881 1.87947 1.18040 1.94732 1.29497 1.22135 0.94877 0.95898 0.82868 1.22347 0.94632 0.98547 1.01863 1.20778 1.00789 0.86062 0.87596 1.44087 1.04789 1.11294 1.71383 1.19153 0.92723 0.92960 1.33437 0.91710 1.25053 0.99398 0.96995 0.98194 1.70014 1.32923 1.07792 1.44132 0.86351 0.84763 0.77645 0.77906 1.20892 1.21619 1.20978 1.20868 0.89102 0.95772 0.92174 1.22532 0.99869 0.96499 1.00188 1.22052 0.95253 0.97862 1.02763 1.21554 0.95221 1.00329 0.97789 0.92814 0.92796 0.92728 0.91165 0.91917 0.91718 0.91437 0.91360 0.92636 0.93198 0.91982 0.92853 0.89066 0.96375 0.93553 0.96612 0.92580 0.91641 0.93371 0.91356 0.91721 0.91994 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.15 0.34 -0.75 16 2 C -0.09 -0.84 2.72 -90.62 -0.25 -1.08 16 3 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 4 C -0.12 -1.33 5.57 -26.73 -0.15 -1.47 16 5 C 0.09 1.23 2.40 -26.73 -0.06 1.17 16 6 O -0.38 -6.53 9.63 -35.23 -0.34 -6.87 16 7 C 0.10 1.83 2.36 -26.69 -0.06 1.77 16 8 C -0.13 -2.76 5.73 -26.61 -0.15 -2.91 16 9 C 0.17 4.25 5.29 -3.71 -0.02 4.23 16 10 N -0.59 -15.24 2.99 -172.32 -0.52 -15.76 16 11 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 12 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 14 N -0.90 -26.45 11.20 55.49 0.62 -25.83 16 15 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 20 C -0.15 -2.83 5.69 -26.61 -0.15 -2.98 16 21 C -0.14 -1.72 5.53 -26.74 -0.15 -1.87 16 22 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.76 7.61 -51.93 -0.40 0.36 16 32 H 0.05 0.91 7.62 -51.93 -0.40 0.52 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.79 7.95 -51.93 -0.41 0.37 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -29.30 342.26 -9.95 -39.25 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.66 Total: -2.45 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.18 Total: -10.37 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.11 Total: -41.59 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.34 Total: -6.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.30 -9.95 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335952817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.658 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds