Wall clock time and date at job start Mon Mar 30 2020 07:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53003 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47122 * 299.99791 * 4 3 2 6 6 O 1.42904 * 109.46956 * 179.97438 * 5 4 3 7 7 C 1.42899 * 113.99774 * 150.00403 * 6 5 4 8 8 C 1.53037 * 109.46152 * 150.00121 * 7 6 5 9 9 C 1.53194 * 109.31665 * 181.37067 * 8 7 6 10 10 N 1.46927 * 108.77332 * 305.36499 * 9 8 7 11 11 C 1.36933 * 120.62742 * 233.32862 * 10 9 8 12 12 H 1.08008 * 119.99663 * 151.88130 * 11 10 9 13 13 C 1.38805 * 120.00459 * 331.88447 * 11 10 9 14 14 N 1.31622 * 119.99962 * 343.12018 * 13 11 10 15 15 Si 1.86795 * 120.00332 * 163.12475 * 13 11 10 16 16 H 1.48496 * 109.47227 * 59.99553 * 15 13 11 17 17 H 1.48505 * 109.47370 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47123 * 299.99866 * 15 13 11 19 19 C 1.46927 * 118.73757 * 53.60733 * 10 9 8 20 20 C 1.53042 * 109.44771 * 270.05849 * 7 6 5 21 21 C 1.52998 * 109.46968 * 60.00133 * 5 4 3 22 22 C 1.52993 * 109.47173 * 299.99902 * 21 5 4 23 23 H 1.09004 * 109.47398 * 59.99853 * 1 2 3 24 24 H 1.08998 * 109.47649 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47202 * 300.00040 * 1 2 3 26 26 H 1.09006 * 109.47067 * 240.00319 * 2 1 3 27 27 H 1.09000 * 109.47690 * 60.00355 * 3 2 1 28 28 H 1.09000 * 109.47217 * 299.99852 * 3 2 1 29 29 H 1.09007 * 109.46988 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.47122 * 60.00337 * 4 3 2 31 31 H 1.08994 * 109.47514 * 299.99843 * 5 4 3 32 32 H 1.09003 * 109.46228 * 30.02800 * 7 6 5 33 33 H 1.08998 * 109.49912 * 61.41523 * 8 7 6 34 34 H 1.09001 * 109.52406 * 301.33708 * 8 7 6 35 35 H 1.08994 * 109.58638 * 185.57412 * 9 8 7 36 36 H 1.08999 * 109.69948 * 65.22024 * 9 8 7 37 37 H 0.96995 * 120.00418 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.59069 * 66.17922 * 19 10 9 39 39 H 1.08998 * 109.58537 * 186.60221 * 19 10 9 40 40 H 1.09000 * 109.49938 * 298.57350 * 20 7 6 41 41 H 1.09003 * 109.49272 * 58.64095 * 20 7 6 42 42 H 1.09006 * 109.46863 * 59.99708 * 21 5 4 43 43 H 1.08996 * 109.47151 * 179.97438 * 21 5 4 44 44 H 1.08999 * 109.47202 * 300.00040 * 22 21 5 45 45 H 1.09008 * 109.47592 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7211 1.2483 6 8 5.5095 0.7205 1.2473 7 6 6.0915 0.7203 2.5524 8 6 7.4402 -0.0016 2.5091 9 6 8.0453 -0.0300 3.9162 10 7 8.1131 1.3450 4.4295 11 6 9.2923 1.8557 4.9026 12 1 9.4798 2.9181 4.8513 13 6 10.2466 1.0080 5.4480 14 7 9.9109 -0.2097 5.8178 15 14 12.0074 1.5955 5.6571 16 1 12.0306 2.7827 6.5487 17 1 12.8235 0.5098 6.2578 18 1 12.5680 1.9611 4.3314 19 6 6.8902 2.1595 4.4314 20 6 6.2983 2.1633 3.0184 21 6 3.5705 -0.7214 1.2483 22 6 2.0405 -0.7214 1.2489 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9333 2.4702 -0.0002 30 1 3.9329 0.9288 -0.8909 31 1 3.7176 1.2347 2.1385 32 1 5.4266 0.2062 3.2465 33 1 8.1139 0.5261 1.8340 34 1 7.2959 -1.0222 2.1546 35 1 9.0484 -0.4543 3.8741 36 1 7.4200 -0.6348 4.5729 37 1 10.5776 -0.8019 6.1993 38 1 6.1687 1.7339 5.1287 39 1 7.1313 3.1799 4.7293 40 1 6.9827 2.6707 2.3386 41 1 5.3405 2.6838 3.0262 42 1 3.9334 -1.2351 0.3580 43 1 3.9345 -1.2355 2.1378 44 1 1.6776 -0.2077 2.1391 45 1 1.6771 -1.7491 1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335952817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:50 Heat of formation + Delta-G solvation = -76.606384 kcal Electronic energy + Delta-G solvation = -21343.640191 eV Core-core repulsion = 18359.447703 eV Total energy + Delta-G solvation = -2984.192487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57981 -39.11461 -37.31115 -34.50138 -32.72058 -31.78899 -31.67869 -31.15164 -27.18537 -26.36633 -24.01076 -23.73780 -23.36985 -22.01439 -20.98137 -20.57696 -18.78901 -17.79303 -16.87988 -16.57988 -15.91293 -15.42249 -15.33160 -15.14397 -15.04667 -14.88558 -14.71361 -14.30117 -13.99413 -13.51078 -13.27312 -13.16225 -13.08976 -13.00279 -12.71735 -12.58255 -12.42013 -12.23651 -12.07822 -11.98168 -11.89383 -11.66421 -11.59965 -11.56191 -11.29104 -11.13788 -10.95875 -10.56171 -10.18562 -8.73470 -7.90107 -5.35915 1.46445 1.49398 1.56186 2.50330 2.69851 3.26422 3.63407 3.75954 3.76624 3.95589 3.98140 4.03397 4.22067 4.23643 4.30542 4.34810 4.45721 4.52194 4.58046 4.61957 4.63938 4.77753 4.81309 4.84095 4.91844 4.96492 5.01301 5.05168 5.12313 5.14009 5.16094 5.19329 5.24557 5.30270 5.31737 5.42453 5.44686 5.47819 5.59290 5.61774 5.68483 6.36347 6.44846 7.11926 7.81971 8.34532 9.17026 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050036 B = 0.003653 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.465127 B = 7662.305571 C = 7832.673631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.112 4.112 5 C 0.084 3.916 6 O -0.394 6.394 7 C 0.110 3.890 8 C -0.124 4.124 9 C 0.182 3.818 10 N -0.612 5.612 11 C -0.268 4.268 12 H 0.067 0.933 13 C -0.050 4.050 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.144 3.856 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.108 4.108 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.002 0.998 37 H 0.251 0.749 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.188 0.947 -11.780 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.150 4.150 5 C 0.026 3.974 6 O -0.314 6.314 7 C 0.052 3.948 8 C -0.163 4.163 9 C 0.056 3.944 10 N -0.336 5.336 11 C -0.398 4.398 12 H 0.084 0.916 13 C -0.245 4.245 14 N -0.580 5.580 15 Si 0.797 3.203 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.018 3.982 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.145 4.145 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.986 0.844 -11.862 21.562 hybrid contribution 1.163 -0.053 0.706 1.362 sum -16.823 0.791 -11.157 20.201 Atomic orbital electron populations 1.21797 0.94049 1.02094 1.02192 1.21171 0.96285 0.95745 0.97980 1.21555 0.93021 0.96846 1.02924 1.21575 0.96486 1.00230 0.96675 1.22284 0.80120 0.95902 0.99072 1.87920 1.20388 1.94839 1.28211 1.21843 0.93762 0.95355 0.83820 1.22113 0.95656 0.99706 0.98816 1.20536 0.98903 0.85463 0.89457 1.44358 1.05667 1.11884 1.71678 1.19490 0.93966 0.93243 1.33116 0.91567 1.25832 1.03119 0.97219 0.98329 1.70165 1.33846 1.08871 1.45161 0.85316 0.79898 0.77187 0.77901 1.19947 1.21820 1.20510 1.21009 0.87787 0.95225 0.94135 1.22363 1.00767 0.96924 0.97713 1.22021 0.97071 0.96709 1.01923 1.21544 0.93246 1.01201 0.98525 0.91955 0.92339 0.92538 0.91261 0.91566 0.90210 0.91730 0.91720 0.92491 0.92891 0.93104 0.91488 0.92301 0.98042 0.93952 0.96405 0.92288 0.92693 0.90402 0.91780 0.93005 0.91790 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.40 2.72 -10.80 -0.03 -1.43 16 3 C -0.11 -1.66 5.20 30.59 0.16 -1.50 16 4 C -0.11 -2.35 5.57 30.59 0.17 -2.18 16 5 C 0.08 2.12 2.40 30.59 0.07 2.19 16 6 O -0.39 -12.94 9.63 -148.98 -1.43 -14.37 16 7 C 0.11 3.95 2.36 30.62 0.07 4.02 16 8 C -0.12 -5.10 5.73 30.67 0.18 -4.92 16 9 C 0.18 9.15 5.29 86.36 0.46 9.60 16 10 N -0.61 -31.88 2.99 -699.10 -2.09 -33.97 16 11 C -0.27 -15.14 9.58 84.03 0.81 -14.33 16 12 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 13 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 14 N -0.93 -55.99 11.20 21.65 0.24 -55.75 16 15 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C 0.14 6.16 6.52 86.36 0.56 6.72 16 20 C -0.14 -4.99 5.69 30.67 0.17 -4.81 16 21 C -0.14 -3.20 5.53 30.59 0.17 -3.03 16 22 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 23 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.06 1.44 7.61 -2.39 -0.02 1.42 16 32 H 0.05 1.88 7.62 -2.39 -0.02 1.86 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.35 7.95 -2.39 -0.02 2.33 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.05 1.31 7.96 -2.39 -0.02 1.29 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -62.79 342.26 3.68 -59.11 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.91 Total: 12.32 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.03 Total: -14.85 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -1.85 Total: -89.72 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.43 Total: -14.37 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -62.79 3.68 -59.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335952817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.495 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds