Wall clock time and date at job start Mon Mar 30 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86811 * 119.99469 * 2 1 4 4 H 1.48498 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47150 * 299.99875 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99797 * 3 2 1 7 7 C 1.37876 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00292 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47502 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47323 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.46844 * 111.00001 * 65.79223 * 12 11 10 14 14 C 1.53036 * 109.52085 * 185.83807 * 13 12 11 15 15 C 1.53114 * 109.28047 * 300.81827 * 14 13 12 16 16 C 1.53121 * 109.15992 * 57.65972 * 15 14 13 17 17 H 1.09002 * 109.50538 * 62.28344 * 16 15 14 18 18 C 1.53004 * 109.53664 * 182.38283 * 16 15 14 19 19 H 1.09000 * 110.75038 * 61.91711 * 18 16 15 20 20 C 1.55299 * 110.84741 * 185.61340 * 18 16 15 21 21 C 1.54939 * 100.94142 * 152.32631 * 20 18 16 22 22 O 1.43649 * 105.13664 * 323.55569 * 21 20 18 23 23 C 1.43237 * 109.96786 * 24.42576 * 22 21 20 24 24 C 1.46847 * 111.00234 * 190.00352 * 12 11 10 25 25 H 0.96998 * 120.00930 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47028 * 59.99637 * 9 7 2 27 27 H 1.09006 * 109.47199 * 300.00189 * 9 7 2 28 28 H 1.08998 * 109.47316 * 60.00066 * 10 9 7 29 29 H 1.08997 * 109.47196 * 300.00280 * 10 9 7 30 30 H 1.09005 * 109.47021 * 60.00688 * 11 10 9 31 31 H 1.08997 * 109.47346 * 300.00351 * 11 10 9 32 32 H 1.08993 * 109.46353 * 305.85080 * 13 12 11 33 33 H 1.08999 * 109.46253 * 65.82424 * 13 12 11 34 34 H 1.09002 * 109.50843 * 60.76520 * 14 13 12 35 35 H 1.09006 * 109.50216 * 180.83726 * 14 13 12 36 36 H 1.08999 * 109.52750 * 297.75107 * 15 14 13 37 37 H 1.09007 * 109.52737 * 177.56226 * 15 14 13 38 38 H 1.09003 * 111.12554 * 270.24091 * 20 18 16 39 39 H 1.09005 * 111.13010 * 34.40422 * 20 18 16 40 40 H 1.09001 * 110.31003 * 204.63831 * 21 20 18 41 41 H 1.09003 * 110.31307 * 82.47011 * 21 20 18 42 42 H 1.08995 * 109.82950 * 238.77325 * 23 22 21 43 43 H 1.08998 * 109.82243 * 117.80717 * 23 22 21 44 44 H 1.08999 * 109.46500 * 54.14075 * 24 12 11 45 45 H 1.09004 * 109.45191 * 294.17589 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8901 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4807 -4.9870 0.0012 12 7 2.4354 -6.1035 0.0018 13 6 3.2045 -6.1374 1.2522 14 6 4.2845 -7.2177 1.1591 15 6 3.6216 -8.5751 0.9088 16 6 2.7879 -8.4984 -0.3732 17 1 3.4409 -8.2868 -1.2199 18 6 2.0739 -9.8325 -0.5998 19 1 1.3877 -10.0473 0.2194 20 6 1.3318 -9.8375 -1.9640 21 6 1.3424 -11.3503 -2.2990 22 8 2.6083 -11.8316 -1.8201 23 6 3.0934 -10.9781 -0.7772 24 6 1.7513 -7.3810 -0.2357 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8722 -3.6042 0.8905 29 1 2.8722 -3.6041 -0.8894 30 1 0.8538 -5.0451 -0.8887 31 1 0.8543 -5.0446 0.8913 32 1 3.6742 -5.1677 1.4161 33 1 2.5365 -6.3625 2.0835 34 1 4.9612 -6.9860 0.3365 35 1 4.8456 -7.2528 2.0929 36 1 2.9746 -8.8251 1.7496 37 1 4.3895 -9.3408 0.7987 38 1 0.3126 -9.4658 -1.8582 39 1 1.8808 -9.2656 -2.7121 40 1 1.2635 -11.4999 -3.3758 41 1 0.5258 -11.8574 -1.7850 42 1 4.0645 -10.5691 -1.0558 43 1 3.1810 -11.5422 0.1513 44 1 1.1654 -7.3144 -1.1524 45 1 1.0901 -7.6001 0.6027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:00 Heat of formation + Delta-G solvation = -75.164554 kcal Electronic energy + Delta-G solvation = -20730.452476 eV Core-core repulsion = 17746.322511 eV Total energy + Delta-G solvation = -2984.129965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17123 -38.55957 -35.19708 -33.43705 -32.53784 -30.93347 -30.25252 -28.49660 -26.61185 -24.39399 -23.27351 -22.71171 -21.72403 -20.74373 -19.81063 -19.67845 -16.86776 -16.51904 -16.14810 -15.39670 -15.15152 -14.93122 -14.51333 -14.30315 -14.04411 -13.77387 -13.52338 -13.26015 -13.10517 -12.68963 -12.25842 -11.96712 -11.77807 -11.63474 -11.48853 -11.25450 -11.18858 -10.97402 -10.86790 -10.67454 -10.64594 -10.54529 -10.21177 -10.18831 -9.76786 -9.56326 -9.30499 -9.02039 -8.33342 -8.03932 -5.98493 -4.00380 3.31940 3.39315 3.43909 3.63736 3.98082 4.21422 4.46811 4.51162 4.62342 4.81096 4.88725 4.91910 4.98362 5.04418 5.26809 5.37306 5.37506 5.40978 5.45158 5.52222 5.55197 5.59015 5.63696 5.67447 5.70871 5.78094 5.87751 5.90905 5.93026 6.11002 6.12780 6.19436 6.33318 6.36536 6.72713 6.73850 6.80138 7.14634 7.40483 7.43161 7.70427 7.85235 8.02212 8.45828 9.07153 9.63642 11.13026 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.003116 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.518111 B = 8984.551649 C = 9458.103549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.538 5.538 13 C 0.051 3.949 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.072 4.072 17 H 0.082 0.918 18 C -0.116 4.116 19 H 0.083 0.917 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.389 6.389 23 C 0.057 3.943 24 C 0.062 3.938 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -22.097 -0.226 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.263 5.263 13 C -0.076 4.076 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.091 4.091 17 H 0.101 0.899 18 C -0.135 4.135 19 H 0.101 0.899 20 C -0.190 4.190 21 C -0.026 4.026 22 O -0.308 6.308 23 C -0.020 4.020 24 C -0.066 4.066 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.497 -22.081 -0.680 22.545 hybrid contribution -0.414 1.073 0.821 1.413 sum 4.083 -21.009 0.141 21.402 Atomic orbital electron populations 1.69972 1.06062 1.26429 1.51191 1.25032 0.94841 0.99262 0.95420 0.86550 0.80166 0.83837 0.77543 1.19711 1.21022 1.21064 1.21293 0.93086 0.91038 1.50110 0.92633 1.19077 0.94050 0.91458 0.97038 1.21653 0.99128 0.92697 1.00753 1.22272 0.93645 0.90980 1.00081 1.61961 1.26788 1.02761 1.34755 1.22136 0.95501 0.99877 0.90134 1.21582 0.97910 0.94071 1.01836 1.21667 0.98940 0.97653 0.97169 1.21169 0.96832 0.92183 0.98948 0.89920 1.22761 0.97299 0.95384 0.98099 0.89862 1.23348 1.01892 0.96641 0.97114 1.23376 0.86241 0.93323 0.99674 1.88390 1.36429 1.51942 1.54047 1.23198 0.97450 0.90589 0.90723 1.22075 0.94855 0.89272 1.00442 0.93110 0.96645 0.96882 0.93473 0.92608 0.91314 0.95485 0.89882 0.95420 0.91084 0.91739 0.92334 0.91932 0.89787 0.89862 0.89818 0.92352 0.91006 0.91654 0.90893 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.10 -2.19 5.08 -26.73 -0.14 -2.32 16 11 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 12 N -0.54 -8.00 4.66 -234.68 -1.09 -9.09 16 13 C 0.05 0.70 5.29 -3.84 -0.02 0.68 16 14 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 15 C -0.12 -1.11 5.03 -26.61 -0.13 -1.24 16 16 C -0.07 -0.72 1.72 -90.54 -0.16 -0.88 16 17 H 0.08 0.91 8.12 -51.93 -0.42 0.48 16 18 C -0.12 -1.00 2.53 -88.68 -0.22 -1.23 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.15 -1.25 5.76 -24.49 -0.14 -1.39 16 21 C 0.05 0.42 7.78 38.18 0.30 0.72 16 22 O -0.39 -4.22 11.36 -35.23 -0.40 -4.62 16 23 C 0.06 0.51 6.50 37.88 0.25 0.76 16 24 C 0.06 0.75 4.57 -3.84 -0.02 0.73 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.20 7.99 -51.93 -0.41 0.78 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.08 1.24 6.21 -51.93 -0.32 0.92 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 7.23 -51.93 -0.38 0.14 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.64 7.50 -51.93 -0.39 0.25 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.87 7.38 -51.93 -0.38 0.49 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -30.63 343.93 -10.13 -40.75 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -8.52 Total: -4.73 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.02 Total: -17.84 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.36 Total: -35.56 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.40 Total: -4.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.63 -10.13 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.410 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds