Wall clock time and date at job start Mon Mar 30 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86811 * 119.99469 * 2 1 4 4 H 1.48498 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47150 * 299.99875 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99797 * 3 2 1 7 7 C 1.37876 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00292 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47502 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47323 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.46844 * 111.00001 * 65.79223 * 12 11 10 14 14 C 1.53036 * 109.52085 * 185.83807 * 13 12 11 15 15 C 1.53114 * 109.28047 * 300.81827 * 14 13 12 16 16 C 1.53121 * 109.15992 * 57.65972 * 15 14 13 17 17 H 1.09002 * 109.50538 * 62.28344 * 16 15 14 18 18 C 1.53004 * 109.53664 * 182.38283 * 16 15 14 19 19 H 1.09000 * 110.75038 * 61.91711 * 18 16 15 20 20 C 1.55299 * 110.84741 * 185.61340 * 18 16 15 21 21 C 1.54939 * 100.94142 * 152.32631 * 20 18 16 22 22 O 1.43649 * 105.13664 * 323.55569 * 21 20 18 23 23 C 1.43237 * 109.96786 * 24.42576 * 22 21 20 24 24 C 1.46847 * 111.00234 * 190.00352 * 12 11 10 25 25 H 0.96998 * 120.00930 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47028 * 59.99637 * 9 7 2 27 27 H 1.09006 * 109.47199 * 300.00189 * 9 7 2 28 28 H 1.08998 * 109.47316 * 60.00066 * 10 9 7 29 29 H 1.08997 * 109.47196 * 300.00280 * 10 9 7 30 30 H 1.09005 * 109.47021 * 60.00688 * 11 10 9 31 31 H 1.08997 * 109.47346 * 300.00351 * 11 10 9 32 32 H 1.08993 * 109.46353 * 305.85080 * 13 12 11 33 33 H 1.08999 * 109.46253 * 65.82424 * 13 12 11 34 34 H 1.09002 * 109.50843 * 60.76520 * 14 13 12 35 35 H 1.09006 * 109.50216 * 180.83726 * 14 13 12 36 36 H 1.08999 * 109.52750 * 297.75107 * 15 14 13 37 37 H 1.09007 * 109.52737 * 177.56226 * 15 14 13 38 38 H 1.09003 * 111.12554 * 270.24091 * 20 18 16 39 39 H 1.09005 * 111.13010 * 34.40422 * 20 18 16 40 40 H 1.09001 * 110.31003 * 204.63831 * 21 20 18 41 41 H 1.09003 * 110.31307 * 82.47011 * 21 20 18 42 42 H 1.08995 * 109.82950 * 238.77325 * 23 22 21 43 43 H 1.08998 * 109.82243 * 117.80717 * 23 22 21 44 44 H 1.08999 * 109.46500 * 54.14075 * 24 12 11 45 45 H 1.09004 * 109.45191 * 294.17589 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8901 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4807 -4.9870 0.0012 12 7 2.4354 -6.1035 0.0018 13 6 3.2045 -6.1374 1.2522 14 6 4.2845 -7.2177 1.1591 15 6 3.6216 -8.5751 0.9088 16 6 2.7879 -8.4984 -0.3732 17 1 3.4409 -8.2868 -1.2199 18 6 2.0739 -9.8325 -0.5998 19 1 1.3877 -10.0473 0.2194 20 6 1.3318 -9.8375 -1.9640 21 6 1.3424 -11.3503 -2.2990 22 8 2.6083 -11.8316 -1.8201 23 6 3.0934 -10.9781 -0.7772 24 6 1.7513 -7.3810 -0.2357 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8722 -3.6042 0.8905 29 1 2.8722 -3.6041 -0.8894 30 1 0.8538 -5.0451 -0.8887 31 1 0.8543 -5.0446 0.8913 32 1 3.6742 -5.1677 1.4161 33 1 2.5365 -6.3625 2.0835 34 1 4.9612 -6.9860 0.3365 35 1 4.8456 -7.2528 2.0929 36 1 2.9746 -8.8251 1.7496 37 1 4.3895 -9.3408 0.7987 38 1 0.3126 -9.4658 -1.8582 39 1 1.8808 -9.2656 -2.7121 40 1 1.2635 -11.4999 -3.3758 41 1 0.5258 -11.8574 -1.7850 42 1 4.0645 -10.5691 -1.0558 43 1 3.1810 -11.5422 0.1513 44 1 1.1654 -7.3144 -1.1524 45 1 1.0901 -7.6001 0.6027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:59 Heat of formation + Delta-G solvation = -93.485791 kcal Electronic energy + Delta-G solvation = -20731.246945 eV Core-core repulsion = 17746.322511 eV Total energy + Delta-G solvation = -2984.924433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97741 -39.52887 -36.57356 -35.11764 -33.69338 -32.57494 -31.00920 -29.45048 -28.25699 -25.78296 -24.27023 -23.91341 -22.71765 -21.97370 -21.03752 -20.68738 -18.50600 -17.57091 -17.20749 -16.60607 -16.34194 -16.22766 -15.86335 -15.51844 -14.94516 -14.82795 -14.76528 -14.30452 -14.01564 -13.97560 -13.60520 -13.55613 -13.10643 -12.80911 -12.67982 -12.50250 -12.41940 -12.29967 -12.16159 -11.94705 -11.79136 -11.59389 -11.49055 -11.37558 -11.29038 -11.02079 -10.87286 -10.55870 -10.45802 -9.24366 -8.20958 -6.31954 1.39452 1.39809 1.53489 2.40314 2.90217 2.98121 3.12120 3.48167 3.70283 3.86891 3.96606 4.06027 4.14191 4.19940 4.29872 4.31546 4.36661 4.44924 4.54668 4.58487 4.63023 4.71520 4.77044 4.78804 4.85559 4.88002 4.94257 4.97902 4.99797 5.02815 5.10091 5.11527 5.17456 5.20878 5.31906 5.35215 5.50828 5.53384 5.73749 5.85165 6.06788 6.12126 6.24675 6.28636 6.84984 7.37369 8.91210 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.003116 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.518111 B = 8984.551649 C = 9458.103549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.088 4.088 11 C 0.069 3.931 12 N -0.545 5.545 13 C 0.048 3.952 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.064 4.064 17 H 0.074 0.926 18 C -0.109 4.109 19 H 0.090 0.910 20 C -0.152 4.152 21 C 0.047 3.953 22 O -0.412 6.412 23 C 0.056 3.944 24 C 0.061 3.939 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -22.954 0.033 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.059 4.059 12 N -0.269 5.269 13 C -0.080 4.080 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.082 4.082 17 H 0.092 0.908 18 C -0.128 4.128 19 H 0.108 0.892 20 C -0.189 4.189 21 C -0.029 4.029 22 O -0.332 6.332 23 C -0.020 4.020 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.560 -22.959 -0.421 23.626 hybrid contribution -0.774 1.319 0.735 1.697 sum 4.786 -21.640 0.314 22.165 Atomic orbital electron populations 1.70097 1.07791 1.27729 1.51810 1.25992 0.95793 1.03391 0.94717 0.85392 0.79070 0.78702 0.77849 1.18624 1.20280 1.20266 1.21712 0.93492 0.92407 1.50361 0.92357 1.18969 0.94391 0.93121 0.94672 1.21389 0.97936 0.92772 1.00536 1.21987 0.93540 0.90578 0.99795 1.61919 1.26287 1.03133 1.35567 1.22195 0.96055 1.00160 0.89551 1.21557 0.96967 0.93817 1.02530 1.21666 0.99336 0.97178 0.96907 1.21069 0.96161 0.91974 0.99033 0.90765 1.22681 0.97251 0.94368 0.98499 0.89160 1.23343 1.02223 0.96609 0.96744 1.23502 0.85738 0.93300 1.00345 1.88363 1.37466 1.52741 1.54651 1.23258 0.97387 0.90575 0.90817 1.22153 0.95494 0.88502 1.00484 0.92745 0.98985 0.99238 0.93251 0.93082 0.91444 0.96030 0.91655 0.95439 0.91638 0.90105 0.91780 0.90078 0.88989 0.90516 0.89048 0.91361 0.90966 0.90603 0.90845 0.95204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.41 4.97 29.84 0.15 1.56 16 10 C -0.09 -3.78 5.08 30.59 0.16 -3.62 16 11 C 0.07 2.43 4.96 86.30 0.43 2.86 16 12 N -0.54 -15.86 4.66 -896.38 -4.17 -20.03 16 13 C 0.05 1.28 5.29 86.33 0.46 1.74 16 14 C -0.11 -2.22 6.09 30.64 0.19 -2.03 16 15 C -0.11 -1.87 5.03 30.67 0.15 -1.71 16 16 C -0.06 -1.15 1.72 -10.74 -0.02 -1.17 16 17 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 18 C -0.11 -1.65 2.53 -9.54 -0.02 -1.67 16 19 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 20 C -0.15 -2.25 5.76 32.05 0.18 -2.06 16 21 C 0.05 0.71 7.78 72.65 0.56 1.28 16 22 O -0.41 -8.29 11.36 -148.98 -1.69 -9.98 16 23 C 0.06 0.89 6.50 72.45 0.47 1.36 16 24 C 0.06 1.41 4.57 86.32 0.39 1.81 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 28 H 0.05 2.07 6.43 -2.39 -0.02 2.05 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.38 7.99 -2.38 -0.02 2.36 16 31 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.07 1.94 6.21 -2.39 -0.01 1.93 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.08 7.23 -2.38 -0.02 1.06 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.24 8.03 -2.38 -0.02 1.22 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.13 7.50 -2.39 -0.02 1.11 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.68 7.38 -2.39 -0.02 1.66 16 45 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -65.67 343.93 1.16 -64.51 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.92 Total: 8.51 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.80 Total: -32.61 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -3.89 Total: -77.27 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.69 Total: -9.98 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.67 1.16 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.976 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds