Wall clock time and date at job start Mon Mar 30 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99510 * 294.21467 * 12 11 10 14 14 C 1.53048 * 109.52064 * 174.15537 * 13 12 11 15 15 C 1.53118 * 109.27745 * 59.17773 * 14 13 12 16 16 C 1.53120 * 109.16026 * 302.34502 * 15 14 13 17 17 H 1.08998 * 109.53693 * 297.69425 * 16 15 14 18 18 C 1.52992 * 109.50296 * 177.59659 * 16 15 14 19 19 H 1.09001 * 110.43866 * 299.10646 * 18 16 15 20 20 C 1.54811 * 110.48829 * 176.41886 * 18 16 15 21 21 C 1.55002 * 102.09192 * 220.44263 * 20 18 16 22 22 O 1.44372 * 103.49040 * 37.02201 * 21 20 18 23 23 C 1.43742 * 106.97838 * 319.94079 * 22 21 20 24 24 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.08996 * 109.46339 * 294.16557 * 13 12 11 33 33 H 1.08994 * 109.46869 * 54.14232 * 13 12 11 34 34 H 1.08998 * 109.49998 * 299.23732 * 14 13 12 35 35 H 1.09001 * 109.53275 * 179.13964 * 14 13 12 36 36 H 1.08999 * 109.52068 * 182.44201 * 15 14 13 37 37 H 1.09002 * 109.52451 * 62.24612 * 15 14 13 38 38 H 1.08997 * 110.90802 * 338.63669 * 20 18 16 39 39 H 1.09001 * 110.90831 * 102.24729 * 20 18 16 40 40 H 1.09000 * 110.61650 * 278.52071 * 21 20 18 41 41 H 1.09007 * 110.61761 * 155.52560 * 21 20 18 42 42 H 1.09004 * 109.87820 * 267.08898 * 23 22 21 43 43 H 1.08996 * 110.00934 * 146.00702 * 23 22 21 44 44 H 1.09003 * 109.46077 * 305.85847 * 24 12 11 45 45 H 1.08995 * 109.45945 * 65.83669 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.2030 -6.1384 -1.2504 14 6 4.2830 -7.2189 -1.1574 15 6 3.6200 -8.5760 -0.9059 16 6 2.7871 -8.4985 0.3766 17 1 3.4403 -8.2868 1.2232 18 6 2.0731 -9.8324 0.6034 19 1 1.4016 -10.0507 -0.2270 20 6 1.2952 -9.8100 1.9416 21 6 1.5672 -11.2305 2.4992 22 8 2.9339 -11.4883 2.1117 23 6 3.0980 -10.9694 0.7813 24 6 1.7505 -7.3810 0.2392 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 0.8537 -5.0445 0.8914 31 1 0.8532 -5.0451 -0.8886 32 1 2.5344 -6.3639 -2.0811 33 1 3.6727 -5.1688 -1.4152 34 1 4.9601 -6.9867 -0.3353 35 1 4.8436 -7.2552 -2.0915 36 1 4.3880 -9.3416 -0.7958 37 1 2.9724 -8.8263 -1.7462 38 1 1.6934 -9.0469 2.6103 39 1 0.2297 -9.6572 1.7697 40 1 0.8952 -11.9572 2.0427 41 1 1.4672 -11.2424 3.5846 42 1 2.9094 -11.7561 0.0508 43 1 4.1084 -10.5808 0.6546 44 1 1.1652 -7.3137 1.1562 45 1 1.0889 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:02 Heat of formation + Delta-G solvation = -73.735953 kcal Electronic energy + Delta-G solvation = -20766.437460 eV Core-core repulsion = 17782.369444 eV Total energy + Delta-G solvation = -2984.068016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19166 -38.51602 -35.16613 -33.41204 -32.52779 -30.92902 -30.19948 -28.43960 -26.59139 -24.44027 -23.19531 -22.85287 -21.71596 -20.64652 -19.76229 -19.65050 -16.75471 -16.49476 -16.18379 -15.42879 -15.23193 -14.94945 -14.52203 -14.26788 -14.20185 -13.69302 -13.46399 -13.11938 -12.98276 -12.63284 -12.23950 -11.90387 -11.77995 -11.67192 -11.44446 -11.27528 -11.18722 -10.93914 -10.80063 -10.65330 -10.61127 -10.55856 -10.22167 -10.17337 -9.88489 -9.54946 -9.29043 -9.03354 -8.31944 -8.02240 -5.97528 -3.99505 3.35135 3.39102 3.41975 3.71205 4.01724 4.26389 4.47773 4.52488 4.65311 4.83749 4.89206 4.91527 5.00139 5.06090 5.28938 5.37559 5.38199 5.42804 5.46588 5.51383 5.53354 5.57990 5.66335 5.70952 5.74200 5.78700 5.89403 5.92552 5.94854 6.12353 6.14041 6.21373 6.34506 6.38068 6.63635 6.73953 6.81308 7.15705 7.42066 7.44702 7.70855 7.86234 8.03107 8.46618 9.07566 9.64298 11.13961 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036127 B = 0.003148 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.857076 B = 8891.228545 C = 9335.689775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.074 4.074 17 H 0.083 0.917 18 C -0.117 4.117 19 H 0.081 0.919 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.051 3.949 24 C 0.062 3.938 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -22.600 0.038 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.263 5.263 13 C -0.076 4.076 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.093 4.093 17 H 0.101 0.899 18 C -0.136 4.136 19 H 0.099 0.901 20 C -0.189 4.189 21 C -0.031 4.031 22 O -0.300 6.300 23 C -0.026 4.026 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.280 -22.504 0.540 22.914 hybrid contribution -0.453 0.963 -0.890 1.387 sum 3.828 -21.541 -0.350 21.881 Atomic orbital electron populations 1.69957 1.06066 1.26642 1.51011 1.25027 0.94846 0.99239 0.95398 0.86659 0.79578 0.83138 0.78630 1.20281 1.21326 1.20202 1.21224 0.93018 0.91071 1.50382 0.92733 1.19067 0.94037 0.91418 0.97024 1.21654 0.99134 0.92710 1.00749 1.22268 0.93647 0.90986 1.00066 1.61959 1.26830 1.02788 1.34696 1.22134 0.95501 0.99859 0.90127 1.21583 0.97918 0.94089 1.01811 1.21697 0.98955 0.97633 0.97205 1.21235 0.96858 0.92358 0.98855 0.89897 1.22584 0.97128 0.95568 0.98302 0.90079 1.23239 1.01077 0.97954 0.96655 1.23561 0.83671 0.95233 1.00650 1.88865 1.28668 1.81118 1.31317 1.23285 1.00183 0.94591 0.84559 1.22082 0.94881 0.89279 1.00401 0.93001 0.96642 0.96904 0.93472 0.92613 0.91321 0.95506 0.95445 0.89901 0.91078 0.91763 0.91912 0.92360 0.89844 0.90181 0.92414 0.89048 0.92673 0.89462 0.90901 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.21 5.08 -26.74 -0.14 -2.34 16 11 C 0.06 1.01 4.96 -3.83 -0.02 1.00 16 12 N -0.54 -8.12 4.66 -234.67 -1.09 -9.21 16 13 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 14 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 15 C -0.12 -1.13 5.01 -26.61 -0.13 -1.27 16 16 C -0.07 -0.76 1.66 -90.54 -0.15 -0.91 16 17 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 18 C -0.12 -1.01 2.61 -89.09 -0.23 -1.25 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 20 C -0.15 -1.27 5.77 -24.72 -0.14 -1.41 16 21 C 0.05 0.38 7.72 38.22 0.29 0.67 16 22 O -0.38 -4.15 11.52 -35.23 -0.41 -4.56 16 23 C 0.05 0.45 6.93 37.73 0.26 0.71 16 24 C 0.06 0.76 4.55 -3.83 -0.02 0.75 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.25 6.21 -51.93 -0.32 0.93 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.52 6.63 -51.93 -0.34 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.76 6.37 -51.93 -0.33 0.43 16 44 H 0.07 0.89 7.21 -51.93 -0.37 0.52 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -30.74 342.27 -10.04 -40.78 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -8.40 Total: -4.40 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.01 Total: -18.10 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.36 Total: -35.77 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.41 Total: -4.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.74 -10.04 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.959 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds