Wall clock time and date at job start Mon Mar 30 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99510 * 294.21467 * 12 11 10 14 14 C 1.53048 * 109.52064 * 174.15537 * 13 12 11 15 15 C 1.53118 * 109.27745 * 59.17773 * 14 13 12 16 16 C 1.53120 * 109.16026 * 302.34502 * 15 14 13 17 17 H 1.08998 * 109.53693 * 297.69425 * 16 15 14 18 18 C 1.52992 * 109.50296 * 177.59659 * 16 15 14 19 19 H 1.09001 * 110.43866 * 299.10646 * 18 16 15 20 20 C 1.54811 * 110.48829 * 176.41886 * 18 16 15 21 21 C 1.55002 * 102.09192 * 220.44263 * 20 18 16 22 22 O 1.44372 * 103.49040 * 37.02201 * 21 20 18 23 23 C 1.43742 * 106.97838 * 319.94079 * 22 21 20 24 24 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.08996 * 109.46339 * 294.16557 * 13 12 11 33 33 H 1.08994 * 109.46869 * 54.14232 * 13 12 11 34 34 H 1.08998 * 109.49998 * 299.23732 * 14 13 12 35 35 H 1.09001 * 109.53275 * 179.13964 * 14 13 12 36 36 H 1.08999 * 109.52068 * 182.44201 * 15 14 13 37 37 H 1.09002 * 109.52451 * 62.24612 * 15 14 13 38 38 H 1.08997 * 110.90802 * 338.63669 * 20 18 16 39 39 H 1.09001 * 110.90831 * 102.24729 * 20 18 16 40 40 H 1.09000 * 110.61650 * 278.52071 * 21 20 18 41 41 H 1.09007 * 110.61761 * 155.52560 * 21 20 18 42 42 H 1.09004 * 109.87820 * 267.08898 * 23 22 21 43 43 H 1.08996 * 110.00934 * 146.00702 * 23 22 21 44 44 H 1.09003 * 109.46077 * 305.85847 * 24 12 11 45 45 H 1.08995 * 109.45945 * 65.83669 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.2030 -6.1384 -1.2504 14 6 4.2830 -7.2189 -1.1574 15 6 3.6200 -8.5760 -0.9059 16 6 2.7871 -8.4985 0.3766 17 1 3.4403 -8.2868 1.2232 18 6 2.0731 -9.8324 0.6034 19 1 1.4016 -10.0507 -0.2270 20 6 1.2952 -9.8100 1.9416 21 6 1.5672 -11.2305 2.4992 22 8 2.9339 -11.4883 2.1117 23 6 3.0980 -10.9694 0.7813 24 6 1.7505 -7.3810 0.2392 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 0.8537 -5.0445 0.8914 31 1 0.8532 -5.0451 -0.8886 32 1 2.5344 -6.3639 -2.0811 33 1 3.6727 -5.1688 -1.4152 34 1 4.9601 -6.9867 -0.3353 35 1 4.8436 -7.2552 -2.0915 36 1 4.3880 -9.3416 -0.7958 37 1 2.9724 -8.8263 -1.7462 38 1 1.6934 -9.0469 2.6103 39 1 0.2297 -9.6572 1.7697 40 1 0.8952 -11.9572 2.0427 41 1 1.4672 -11.2424 3.5846 42 1 2.9094 -11.7561 0.0508 43 1 4.1084 -10.5808 0.6546 44 1 1.1652 -7.3137 1.1562 45 1 1.0889 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:02 Heat of formation + Delta-G solvation = -92.306414 kcal Electronic energy + Delta-G solvation = -20767.242735 eV Core-core repulsion = 17782.369444 eV Total energy + Delta-G solvation = -2984.873292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00350 -39.49590 -36.56021 -35.10368 -33.67914 -32.58630 -30.96400 -29.40933 -28.23223 -25.80796 -24.26759 -23.96701 -22.81264 -21.89731 -20.99145 -20.64215 -18.50087 -17.45414 -17.20182 -16.64699 -16.33158 -16.27628 -15.93361 -15.52858 -15.09464 -14.81785 -14.75088 -14.25606 -14.04602 -13.73677 -13.57974 -13.49138 -13.08310 -12.78038 -12.65118 -12.51003 -12.44488 -12.27756 -12.17504 -11.99173 -11.79593 -11.55796 -11.41740 -11.37618 -11.31098 -11.02154 -10.89373 -10.56479 -10.54642 -9.24254 -8.20786 -6.32003 1.39359 1.42745 1.50695 2.40444 2.90994 3.06622 3.12141 3.53528 3.70431 3.89096 3.99251 4.04754 4.14599 4.19769 4.30392 4.31855 4.38004 4.44668 4.54800 4.61427 4.63604 4.71180 4.75462 4.79180 4.85847 4.87079 4.94568 4.97051 5.00634 5.04666 5.09486 5.11838 5.18119 5.21815 5.29708 5.36395 5.50190 5.52908 5.73457 5.84824 5.97680 6.12165 6.24696 6.28546 6.84491 7.37179 8.91042 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036127 B = 0.003148 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.857076 B = 8891.228545 C = 9335.689775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.089 4.089 11 C 0.069 3.931 12 N -0.546 5.546 13 C 0.049 3.951 14 C -0.111 4.111 15 C -0.114 4.114 16 C -0.066 4.066 17 H 0.069 0.931 18 C -0.110 4.110 19 H 0.092 0.908 20 C -0.152 4.152 21 C 0.043 3.957 22 O -0.406 6.406 23 C 0.049 3.951 24 C 0.062 3.938 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -23.617 -0.380 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.059 4.059 12 N -0.270 5.270 13 C -0.079 4.079 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.085 4.085 17 H 0.087 0.913 18 C -0.129 4.129 19 H 0.110 0.890 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.326 6.326 23 C -0.027 4.027 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.263 -23.543 0.121 24.124 hybrid contribution -0.786 1.260 -0.751 1.664 sum 4.478 -22.283 -0.630 22.737 Atomic orbital electron populations 1.70089 1.07808 1.27869 1.51639 1.25994 0.95798 1.03394 0.94660 0.85496 0.78294 0.78010 0.79228 1.19135 1.20692 1.19155 1.21665 0.93505 0.92433 1.50654 0.92334 1.18960 0.94372 0.93088 0.94658 1.21391 0.97948 0.92790 1.00516 1.21983 0.93538 0.90581 0.99779 1.61917 1.26366 1.03174 1.35572 1.22193 0.96054 1.00137 0.89537 1.21560 0.96975 0.93888 1.02481 1.21695 0.99370 0.97138 0.96914 1.21139 0.96177 0.92350 0.98814 0.91266 1.22528 0.97156 0.94464 0.98781 0.88960 1.23234 1.01632 0.97774 0.96314 1.23696 0.82936 0.95361 1.01315 1.88837 1.30034 1.81446 1.32296 1.23361 1.00225 0.94928 0.84199 1.22155 0.95512 0.88507 1.00416 0.92724 0.99009 0.99234 0.93220 0.93147 0.91514 0.95985 0.95364 0.91676 0.91800 0.90038 0.90030 0.91607 0.91078 0.89115 0.91028 0.88384 0.91296 0.89394 0.91005 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.82 5.08 30.59 0.16 -3.66 16 11 C 0.07 2.47 4.96 86.30 0.43 2.90 16 12 N -0.55 -16.23 4.66 -896.37 -4.17 -20.40 16 13 C 0.05 1.31 5.29 86.33 0.46 1.77 16 14 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 15 C -0.11 -1.91 5.01 30.67 0.15 -1.76 16 16 C -0.07 -1.24 1.66 -10.74 -0.02 -1.26 16 17 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 18 C -0.11 -1.68 2.61 -9.80 -0.03 -1.70 16 19 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 20 C -0.15 -2.31 5.77 31.90 0.18 -2.13 16 21 C 0.04 0.64 7.72 72.67 0.56 1.20 16 22 O -0.41 -8.23 11.52 -148.98 -1.72 -9.94 16 23 C 0.05 0.77 6.93 72.36 0.50 1.27 16 24 C 0.06 1.46 4.55 86.33 0.39 1.85 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.05 2.10 6.43 -2.39 -0.02 2.08 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 31 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.96 6.21 -2.39 -0.01 1.95 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.11 6.63 -2.39 -0.02 1.09 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.26 7.75 -2.39 -0.02 1.24 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.34 6.37 -2.39 -0.02 1.32 16 44 H 0.07 1.71 7.21 -2.39 -0.02 1.69 16 45 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -66.18 342.27 1.16 -65.02 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.92 Total: 9.07 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 3.82 Total: -33.22 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.89 Total: -77.85 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.72 Total: -9.94 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.18 1.16 -65.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.291 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds