Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.46840 * 111.00086 * 66.04921 * 12 11 10 14 14 C 1.53042 * 109.52293 * 185.84099 * 13 12 11 15 15 C 1.53120 * 109.27492 * 300.81913 * 14 13 12 16 16 C 1.53117 * 109.16493 * 57.65550 * 15 14 13 17 17 H 1.09000 * 109.50277 * 62.28278 * 16 15 14 18 18 C 1.52996 * 109.50644 * 182.36752 * 16 15 14 19 19 H 1.09001 * 110.80769 * 63.62826 * 18 16 15 20 20 C 1.54811 * 110.90522 * 299.99818 * 18 16 15 21 21 C 1.54097 * 104.18909 * 220.92437 * 20 18 16 22 22 O 1.43750 * 107.29296 * 357.96931 * 21 20 18 23 23 C 1.44380 * 106.97261 * 26.51302 * 22 21 20 24 24 C 1.46845 * 110.99832 * 190.26083 * 12 11 10 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.08998 * 109.46156 * 305.85242 * 13 12 11 33 33 H 1.08996 * 109.46421 * 65.81994 * 13 12 11 34 34 H 1.08999 * 109.50568 * 60.75778 * 14 13 12 35 35 H 1.09004 * 109.50110 * 180.84435 * 14 13 12 36 36 H 1.09000 * 109.52371 * 177.56259 * 15 14 13 37 37 H 1.09010 * 109.52409 * 297.74869 * 15 14 13 38 38 H 1.09003 * 110.48854 * 339.59996 * 20 18 16 39 39 H 1.08999 * 110.48672 * 102.11587 * 20 18 16 40 40 H 1.08996 * 109.88013 * 117.39333 * 21 20 18 41 41 H 1.09007 * 109.87938 * 238.39535 * 21 20 18 42 42 H 1.08997 * 110.61297 * 201.43449 * 23 22 21 43 43 H 1.09003 * 110.61504 * 78.44613 * 23 22 21 44 44 H 1.09011 * 109.46076 * 294.17568 * 24 12 11 45 45 H 1.09004 * 109.46695 * 54.14139 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 5.6917 -4.7027 -1.2540 14 6 6.0869 -6.1784 -1.1616 15 6 7.5927 -6.2832 -0.9045 16 6 7.9373 -5.5251 0.3804 17 1 7.4236 -5.9862 1.2239 18 6 9.4486 -5.5749 0.6133 19 1 9.9809 -5.0609 -0.1871 20 6 9.9382 -7.0369 0.7523 21 6 10.9673 -6.9833 1.8980 22 8 11.0723 -5.6114 2.3142 23 6 9.8152 -4.9769 1.9954 24 6 7.4883 -4.0684 0.2433 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6579 -3.1507 0.8896 30 1 5.9148 -2.1228 -0.8901 31 1 5.9149 -2.1230 0.8899 32 1 4.6178 -4.6243 -1.4228 33 1 6.2244 -4.2352 -2.0821 34 1 5.5441 -6.6498 -0.3423 35 1 5.8411 -6.6802 -2.0975 36 1 7.8714 -7.3313 -0.7949 37 1 8.1366 -5.8465 -1.7422 38 1 9.1088 -7.6937 1.0150 39 1 10.4100 -7.3708 -0.1718 40 1 10.6270 -7.5984 2.7310 41 1 11.9345 -7.3408 1.5444 42 1 9.9377 -3.8961 1.9257 43 1 9.0579 -5.2313 2.7369 44 1 8.0127 -3.6038 -0.5919 45 1 7.7193 -3.5292 1.1620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -71.210573 kcal Electronic energy + Delta-G solvation = -20780.916677 eV Core-core repulsion = 17796.958170 eV Total energy + Delta-G solvation = -2983.958507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19344 -38.60682 -35.30811 -33.45661 -32.41010 -31.24186 -30.43581 -28.35468 -27.06092 -24.20861 -23.79743 -22.25360 -21.90100 -20.57697 -19.84524 -19.74616 -16.82060 -16.68566 -16.30892 -15.56373 -15.25842 -15.05178 -14.47197 -14.27149 -14.07231 -13.88280 -13.59926 -13.20488 -13.08371 -12.76750 -12.55980 -11.96170 -11.87147 -11.79634 -11.63326 -11.41189 -11.22597 -11.01022 -10.92726 -10.78533 -10.65211 -10.40675 -10.25353 -9.92474 -9.90159 -9.63197 -9.51203 -9.14121 -8.51595 -8.11414 -6.02068 -3.99610 3.31671 3.39088 3.43023 3.64775 4.00802 4.17852 4.44222 4.47078 4.60184 4.76286 4.79419 4.87720 4.97146 5.03407 5.21573 5.31840 5.34378 5.37249 5.43124 5.47500 5.51303 5.53544 5.57207 5.62347 5.65593 5.71496 5.80036 5.82859 5.87346 6.03391 6.07359 6.14511 6.20408 6.32337 6.57227 6.59033 6.60529 6.93598 7.28553 7.30136 7.40092 7.49054 7.82883 8.57474 9.03658 9.60719 11.11572 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.003350 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.756810 B = 8356.160957 C = 8945.277730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.537 5.537 13 C 0.051 3.949 14 C -0.117 4.117 15 C -0.114 4.114 16 C -0.073 4.073 17 H 0.082 0.918 18 C -0.115 4.115 19 H 0.083 0.917 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.382 6.382 23 C 0.050 3.950 24 C 0.059 3.941 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.008 0.992 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.334 -14.467 -0.161 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.261 5.261 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.092 4.092 17 H 0.100 0.900 18 C -0.134 4.134 19 H 0.102 0.898 20 C -0.188 4.188 21 C -0.031 4.031 22 O -0.301 6.301 23 C -0.027 4.027 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.128 -14.496 0.323 25.625 hybrid contribution 0.536 1.283 -0.843 1.626 sum 21.664 -13.213 -0.519 25.381 Atomic orbital electron populations 1.69920 1.06299 1.26816 1.51393 1.25047 0.94731 0.99169 0.94662 0.86767 0.80376 0.83648 0.78418 1.20399 1.21414 1.19025 1.21153 0.89533 0.94434 1.50471 0.91039 1.19553 0.97147 0.92384 0.96040 1.21476 0.90958 0.99451 1.01593 1.22302 0.98049 0.86869 1.00069 1.61933 1.12503 1.17060 1.34647 1.22148 1.01754 0.93800 0.89979 1.21590 0.95628 0.96368 1.01870 1.21637 0.96562 0.99896 0.97038 1.21166 0.92840 0.96163 0.99027 0.89978 1.22765 0.96520 0.95737 0.98399 0.89813 1.22990 0.99187 0.97300 0.99288 1.23145 0.99619 0.84232 0.96100 1.88866 1.35149 1.22520 1.83525 1.23676 0.85920 0.98313 0.94748 1.22114 0.88547 0.95767 1.00465 0.92792 0.96668 0.97363 0.92888 0.91974 0.95476 0.91271 0.89783 0.95389 0.91053 0.91713 0.91915 0.92417 0.90322 0.90592 0.92496 0.90134 0.88937 0.91715 0.95270 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.94 5.09 -26.73 -0.14 -2.08 16 11 C 0.05 0.89 4.96 -3.82 -0.02 0.87 16 12 N -0.54 -7.61 4.65 -234.67 -1.09 -8.70 16 13 C 0.05 0.67 5.29 -3.84 -0.02 0.65 16 14 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 15 C -0.11 -1.03 5.01 -26.61 -0.13 -1.16 16 16 C -0.07 -0.69 1.77 -90.54 -0.16 -0.85 16 17 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 18 C -0.11 -0.96 2.66 -88.62 -0.24 -1.19 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.15 -1.07 5.65 -25.20 -0.14 -1.21 16 21 C 0.05 0.36 7.70 37.73 0.29 0.65 16 22 O -0.38 -4.11 11.52 -35.23 -0.41 -4.52 16 23 C 0.05 0.46 6.41 38.21 0.25 0.70 16 24 C 0.06 0.68 4.59 -3.83 -0.02 0.67 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 28 H 0.05 1.06 6.44 -51.93 -0.33 0.73 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 32 H 0.08 1.22 6.22 -51.93 -0.32 0.90 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.49 7.15 -51.93 -0.37 0.12 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.08 0.53 7.49 -51.93 -0.39 0.14 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 44 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.07 0.82 7.42 -51.93 -0.39 0.43 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.14 340.27 -9.78 -40.92 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.48 Total: -4.36 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.03 Total: -18.29 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.32 Total: -36.20 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.41 Total: -4.52 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.14 -9.78 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.295 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds