Wall clock time and date at job start Mon Mar 30 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.46840 * 111.00086 * 66.04921 * 12 11 10 14 14 C 1.53042 * 109.52293 * 185.84099 * 13 12 11 15 15 C 1.53120 * 109.27492 * 300.81913 * 14 13 12 16 16 C 1.53117 * 109.16493 * 57.65550 * 15 14 13 17 17 H 1.09000 * 109.50277 * 62.28278 * 16 15 14 18 18 C 1.52996 * 109.50644 * 182.36752 * 16 15 14 19 19 H 1.09001 * 110.80769 * 63.62826 * 18 16 15 20 20 C 1.54811 * 110.90522 * 299.99818 * 18 16 15 21 21 C 1.54097 * 104.18909 * 220.92437 * 20 18 16 22 22 O 1.43750 * 107.29296 * 357.96931 * 21 20 18 23 23 C 1.44380 * 106.97261 * 26.51302 * 22 21 20 24 24 C 1.46845 * 110.99832 * 190.26083 * 12 11 10 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.08998 * 109.46156 * 305.85242 * 13 12 11 33 33 H 1.08996 * 109.46421 * 65.81994 * 13 12 11 34 34 H 1.08999 * 109.50568 * 60.75778 * 14 13 12 35 35 H 1.09004 * 109.50110 * 180.84435 * 14 13 12 36 36 H 1.09000 * 109.52371 * 177.56259 * 15 14 13 37 37 H 1.09010 * 109.52409 * 297.74869 * 15 14 13 38 38 H 1.09003 * 110.48854 * 339.59996 * 20 18 16 39 39 H 1.08999 * 110.48672 * 102.11587 * 20 18 16 40 40 H 1.08996 * 109.88013 * 117.39333 * 21 20 18 41 41 H 1.09007 * 109.87938 * 238.39535 * 21 20 18 42 42 H 1.08997 * 110.61297 * 201.43449 * 23 22 21 43 43 H 1.09003 * 110.61504 * 78.44613 * 23 22 21 44 44 H 1.09011 * 109.46076 * 294.17568 * 24 12 11 45 45 H 1.09004 * 109.46695 * 54.14139 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 5.6917 -4.7027 -1.2540 14 6 6.0869 -6.1784 -1.1616 15 6 7.5927 -6.2832 -0.9045 16 6 7.9373 -5.5251 0.3804 17 1 7.4236 -5.9862 1.2239 18 6 9.4486 -5.5749 0.6133 19 1 9.9809 -5.0609 -0.1871 20 6 9.9382 -7.0369 0.7523 21 6 10.9673 -6.9833 1.8980 22 8 11.0723 -5.6114 2.3142 23 6 9.8152 -4.9769 1.9954 24 6 7.4883 -4.0684 0.2433 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6579 -3.1507 0.8896 30 1 5.9148 -2.1228 -0.8901 31 1 5.9149 -2.1230 0.8899 32 1 4.6178 -4.6243 -1.4228 33 1 6.2244 -4.2352 -2.0821 34 1 5.5441 -6.6498 -0.3423 35 1 5.8411 -6.6802 -2.0975 36 1 7.8714 -7.3313 -0.7949 37 1 8.1366 -5.8465 -1.7422 38 1 9.1088 -7.6937 1.0150 39 1 10.4100 -7.3708 -0.1718 40 1 10.6270 -7.5984 2.7310 41 1 11.9345 -7.3408 1.5444 42 1 9.9377 -3.8961 1.9257 43 1 9.0579 -5.2313 2.7369 44 1 8.0127 -3.6038 -0.5919 45 1 7.7193 -3.5292 1.1620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:04 Heat of formation + Delta-G solvation = -90.831657 kcal Electronic energy + Delta-G solvation = -20781.767511 eV Core-core repulsion = 17796.958170 eV Total energy + Delta-G solvation = -2984.809341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95722 -39.52036 -36.60282 -35.09178 -33.68921 -32.71743 -31.22033 -29.19228 -28.65367 -25.54931 -24.62174 -23.43296 -22.81726 -21.84890 -21.03587 -20.65399 -18.89096 -17.42869 -17.23982 -16.43930 -16.34984 -16.21090 -15.97023 -15.56361 -15.04065 -14.88839 -14.68653 -14.64634 -14.05824 -13.86652 -13.68321 -13.57971 -13.25029 -12.78966 -12.62296 -12.54064 -12.27689 -12.23939 -11.92500 -11.83190 -11.74962 -11.70479 -11.45440 -11.37877 -11.34925 -11.01944 -10.92190 -10.76055 -10.60326 -9.22589 -8.29785 -6.34062 1.35291 1.37637 1.49949 2.36157 2.87613 3.05415 3.08773 3.51002 3.75838 3.86692 4.01090 4.08572 4.12985 4.15429 4.26133 4.33755 4.35921 4.44517 4.53813 4.60512 4.63772 4.68190 4.78410 4.82190 4.85156 4.88855 4.89938 4.93408 4.95763 5.01975 5.06120 5.09704 5.13427 5.18183 5.29839 5.36071 5.51204 5.55030 5.60503 5.66385 5.94347 6.15036 6.26292 6.30516 6.74254 7.30494 8.87341 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.003350 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.756810 B = 8356.160957 C = 8945.277730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.087 4.087 11 C 0.065 3.935 12 N -0.547 5.547 13 C 0.048 3.952 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.064 4.064 17 H 0.075 0.925 18 C -0.107 4.107 19 H 0.085 0.915 20 C -0.144 4.144 21 C 0.039 3.961 22 O -0.406 6.406 23 C 0.046 3.954 24 C 0.058 3.942 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.041 -14.548 -0.527 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.063 4.063 12 N -0.271 5.271 13 C -0.079 4.079 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.083 4.083 17 H 0.094 0.906 18 C -0.126 4.126 19 H 0.103 0.897 20 C -0.182 4.182 21 C -0.037 4.037 22 O -0.326 6.326 23 C -0.030 4.030 24 C -0.069 4.069 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.854 -14.604 -0.043 27.970 hybrid contribution -0.382 1.216 -0.718 1.462 sum 23.472 -13.389 -0.761 27.033 Atomic orbital electron populations 1.70079 1.08381 1.28194 1.52757 1.26078 0.95664 1.03700 0.94078 0.85601 0.79523 0.77947 0.79226 1.19121 1.20916 1.16842 1.21514 0.92271 0.93024 1.50329 0.95308 1.19490 0.93780 0.95055 0.96412 1.21282 0.93925 0.96709 1.00577 1.22052 0.95021 0.88630 1.00553 1.61885 1.14444 1.15507 1.35291 1.22181 1.00493 0.95615 0.89654 1.21568 0.96815 0.94298 1.02362 1.21618 0.95184 1.01045 0.96777 1.21072 0.93513 0.94628 0.99107 0.90645 1.22663 0.95460 0.96681 0.97830 0.89677 1.22979 0.99204 0.96408 0.99603 1.23325 1.00637 0.83106 0.96674 1.88840 1.35846 1.23966 1.83957 1.23730 0.85551 0.98476 0.95259 1.22201 0.86646 0.97459 1.00631 0.92485 0.96104 0.96482 0.93617 0.93428 0.95121 0.90619 0.91972 0.95186 0.91799 0.90348 0.89988 0.91968 0.89677 0.89218 0.92011 0.89006 0.88858 0.91901 0.94970 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 7 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.51 5.09 30.60 0.16 -3.35 16 11 C 0.07 2.06 4.96 86.31 0.43 2.49 16 12 N -0.55 -14.87 4.65 -896.34 -4.17 -19.04 16 13 C 0.05 1.23 5.29 86.33 0.46 1.69 16 14 C -0.11 -2.18 6.09 30.65 0.19 -1.99 16 15 C -0.11 -1.66 5.01 30.67 0.15 -1.51 16 16 C -0.06 -1.07 1.77 -10.74 -0.02 -1.09 16 17 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 18 C -0.11 -1.53 2.66 -9.50 -0.03 -1.55 16 19 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.14 -1.64 5.65 31.58 0.18 -1.47 16 21 C 0.04 0.54 7.70 72.35 0.56 1.09 16 22 O -0.41 -8.16 11.52 -148.98 -1.72 -9.88 16 23 C 0.05 0.78 6.41 72.66 0.47 1.24 16 24 C 0.06 1.23 4.59 86.33 0.40 1.63 16 25 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 27 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 28 H 0.05 1.88 6.44 -2.39 -0.02 1.86 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 31 H 0.08 2.30 7.98 -2.39 -0.02 2.28 16 32 H 0.06 1.83 6.22 -2.39 -0.01 1.81 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 0.98 7.15 -2.39 -0.02 0.96 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.88 7.49 -2.39 -0.02 0.86 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 43 H 0.06 1.06 8.01 -2.39 -0.02 1.04 16 44 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.07 1.55 7.42 -2.38 -0.02 1.53 16 Total: -1.00 -68.02 340.27 0.92 -67.10 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.86 Total: 9.84 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.77 Total: -34.05 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.87 Total: -79.78 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.72 Total: -9.88 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -68.02 0.92 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.736 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds