Wall clock time and date at job start Mon Mar 30 2020 08:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 C 1.53000 * 109.46978 * 174.99889 * 3 2 1 5 5 C 1.53001 * 109.47300 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46757 * 300.00210 * 5 4 3 7 7 C 1.50701 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99827 * 341.48342 * 7 6 5 9 9 N 1.34771 * 119.99821 * 161.48461 * 7 6 5 10 10 C 1.46508 * 119.99894 * 184.13258 * 9 7 6 11 11 C 1.46499 * 120.00550 * 4.13647 * 9 7 6 12 12 H 1.09010 * 109.46516 * 6.27688 * 11 9 7 13 13 C 1.52992 * 109.47587 * 126.27668 * 11 9 7 14 14 C 1.50705 * 109.47093 * 246.28580 * 11 9 7 15 15 H 1.07995 * 119.99772 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99802 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99738 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00026 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.47370 * 90.00644 * 18 16 14 20 20 H 1.48504 * 109.47090 * 210.00053 * 18 16 14 21 21 H 1.48494 * 109.47337 * 329.99952 * 18 16 14 22 22 C 1.53000 * 109.47387 * 59.99843 * 6 5 4 23 23 C 1.52997 * 109.47194 * 294.99909 * 3 2 1 24 24 H 1.08998 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47382 * 300.00070 * 1 2 3 26 26 H 1.09001 * 109.47213 * 60.00264 * 1 2 3 27 27 H 1.08997 * 109.47382 * 239.99930 * 2 1 3 28 28 H 1.09001 * 109.47213 * 119.99736 * 2 1 3 29 29 H 1.08998 * 109.46890 * 54.99796 * 3 2 1 30 30 H 1.08998 * 109.47386 * 60.00211 * 4 3 2 31 31 H 1.09000 * 109.47045 * 300.00005 * 4 3 2 32 32 H 1.08993 * 109.47633 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46896 * 59.99707 * 5 4 3 34 34 H 1.09001 * 109.46757 * 299.99885 * 6 5 4 35 35 H 1.09003 * 109.46756 * 274.74279 * 10 9 7 36 36 H 1.09002 * 109.46932 * 34.74457 * 10 9 7 37 37 H 1.09001 * 109.46857 * 154.74083 * 10 9 7 38 38 H 1.08996 * 109.47247 * 300.00254 * 13 11 9 39 39 H 1.09000 * 109.47153 * 60.00551 * 13 11 9 40 40 H 1.08999 * 109.47345 * 179.97438 * 13 11 9 41 41 H 0.97001 * 120.00259 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47386 * 59.99817 * 22 6 5 43 43 H 1.09000 * 109.47045 * 180.02562 * 22 6 5 44 44 H 1.09001 * 109.46860 * 300.00209 * 23 3 2 45 45 H 1.09001 * 109.47386 * 59.99745 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0748 2.8869 0.1264 6 6 3.6699 3.5715 -1.1807 7 6 4.1727 4.9921 -1.1804 8 8 4.4871 5.5238 -0.1367 9 7 4.2730 5.6717 -2.3399 10 6 4.8464 7.0198 -2.3516 11 6 3.8087 5.0624 -3.5887 12 1 3.3166 4.1147 -3.3695 13 6 2.8190 6.0035 -4.2782 14 6 4.9864 4.8185 -4.4969 15 1 5.9811 5.0906 -4.1761 16 6 4.7938 4.2481 -5.7372 17 7 5.8214 4.0357 -6.5300 18 14 3.0734 3.7769 -6.2916 19 1 2.4491 4.9245 -6.9978 20 1 3.1509 2.6130 -7.2108 21 1 2.2524 3.4184 -5.1073 22 6 2.1451 3.5696 -1.3064 23 6 1.6352 2.1265 -1.3073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6053 1.9815 0.8418 30 1 3.9995 0.9054 -0.7160 31 1 3.8531 0.9571 1.0571 32 1 5.1610 2.8883 0.2164 33 1 3.6401 3.4255 0.9684 34 1 4.1046 3.0328 -2.0227 35 1 4.0689 7.7473 -2.1181 36 1 5.6395 7.0838 -1.6066 37 1 5.2573 7.2313 -3.3388 38 1 1.9673 6.1798 -3.6213 39 1 3.3111 6.9511 -4.4974 40 1 2.4739 5.5503 -5.2076 41 1 5.6860 3.6347 -7.4028 42 1 1.7104 4.1082 -0.4644 43 1 1.8568 4.0569 -2.2379 44 1 2.0699 1.5875 -2.1491 45 1 0.5489 2.1252 -1.3970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336887246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:46 Heat of formation + Delta-G solvation = -65.552627 kcal Electronic energy + Delta-G solvation = -22065.113867 eV Core-core repulsion = 19081.400707 eV Total energy + Delta-G solvation = -2983.713160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92566 -37.93881 -35.75777 -33.78002 -32.58060 -30.68569 -30.10329 -29.33678 -26.51701 -25.19501 -23.82828 -22.50326 -21.65563 -20.68836 -19.70260 -18.10401 -16.99248 -16.39258 -15.59160 -15.13902 -14.73206 -14.52554 -14.24533 -13.89300 -13.50675 -13.27869 -13.13651 -12.95565 -12.63996 -12.35824 -12.13871 -12.05421 -11.82463 -11.57687 -11.51889 -11.30496 -11.23065 -11.04061 -10.89755 -10.78026 -10.60636 -10.37086 -10.18115 -10.08651 -9.78307 -9.76721 -9.43687 -8.95396 -8.71119 -7.72617 -6.24180 -4.26179 3.13408 3.21493 3.26848 3.32957 3.87975 4.22591 4.72660 4.78551 4.87384 5.06046 5.14589 5.18786 5.29429 5.43958 5.55611 5.56930 5.64043 5.70332 5.74333 5.84196 5.93031 5.96372 6.00207 6.03347 6.10680 6.12664 6.17684 6.20716 6.25827 6.31224 6.33425 6.36199 6.40870 6.44945 6.50891 6.55728 6.66122 6.71773 6.88475 7.33486 7.53731 8.11192 8.47130 8.79203 8.93692 9.35809 10.88577 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.007083 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.597943 B = 3952.126956 C = 4918.392829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.114 4.114 5 C -0.096 4.096 6 C -0.106 4.106 7 C 0.516 3.484 8 O -0.571 6.571 9 N -0.586 5.586 10 C 0.094 3.906 11 C 0.222 3.778 12 H 0.057 0.943 13 C -0.164 4.164 14 C -0.533 4.533 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.891 5.891 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.264 1.264 22 C -0.110 4.110 23 C -0.114 4.114 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.267 0.733 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -4.964 9.527 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.106 4.106 4 C -0.151 4.151 5 C -0.134 4.134 6 C -0.127 4.127 7 C 0.305 3.695 8 O -0.452 6.452 9 N -0.316 5.316 10 C -0.049 4.049 11 C 0.120 3.880 12 H 0.075 0.925 13 C -0.222 4.222 14 C -0.571 4.571 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.528 5.528 18 Si 0.711 3.289 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.189 1.189 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.252 -4.739 9.854 14.323 hybrid contribution -0.785 -0.168 -0.761 1.106 sum -10.037 -4.907 9.093 14.405 Atomic orbital electron populations 1.21824 0.96194 1.01179 1.01903 1.21575 0.95657 0.96675 1.01828 1.21210 0.95771 0.95452 0.98195 1.21608 0.94978 0.96842 1.01707 1.21311 1.00938 0.94612 0.96550 1.21305 0.97005 0.93769 1.00646 1.20528 0.77826 0.88047 0.83139 1.90582 1.52156 1.70764 1.31714 1.47906 1.59614 1.16141 1.07962 1.21422 0.97561 0.83147 1.02758 1.19497 0.94343 0.92403 0.81771 0.92523 1.22475 0.98617 1.01488 0.99579 1.21231 0.94008 1.41914 0.99929 0.90195 1.24900 0.96710 0.94863 0.96206 1.69876 1.30126 1.43091 1.09675 0.86961 0.85100 0.77757 0.79095 1.20324 1.22086 1.18877 1.21563 0.93516 0.97288 1.02462 1.21640 1.00442 0.95397 0.97617 0.93175 0.92951 0.92410 0.91953 0.92253 0.91316 0.91758 0.92076 0.91788 0.91356 0.88067 0.94205 0.92274 0.90269 0.94685 0.92250 0.93121 0.92329 0.91842 0.91053 0.91560 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.20 5.40 -26.73 -0.14 -1.34 16 3 C -0.09 -1.02 2.19 -90.62 -0.20 -1.22 16 4 C -0.11 -1.42 5.20 -26.73 -0.14 -1.56 16 5 C -0.10 -1.47 4.65 -26.73 -0.12 -1.60 16 6 C -0.11 -1.84 1.65 -91.77 -0.15 -1.99 16 7 C 0.52 10.59 6.85 -10.99 -0.08 10.51 16 8 O -0.57 -12.83 15.72 5.56 0.09 -12.74 16 9 N -0.59 -12.25 2.75 -175.25 -0.48 -12.74 16 10 C 0.09 1.80 9.24 59.85 0.55 2.36 16 11 C 0.22 4.86 1.48 -69.08 -0.10 4.76 16 12 H 0.06 1.22 3.45 -51.92 -0.18 1.04 16 13 C -0.16 -3.30 8.57 37.15 0.32 -2.98 16 14 C -0.53 -13.89 8.69 -34.44 -0.30 -14.19 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 17 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 18 Si 0.88 20.13 24.37 -169.99 -4.14 15.99 16 19 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.26 -5.59 6.53 56.52 0.37 -5.22 16 22 C -0.11 -1.68 4.85 -26.71 -0.13 -1.81 16 23 C -0.11 -1.46 4.96 -26.71 -0.13 -1.60 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 34 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 37 H 0.08 1.53 7.32 -51.93 -0.38 1.15 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.16 7.36 -51.93 -0.38 0.78 16 40 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 1.16 6.39 -51.93 -0.33 0.83 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -29.06 333.76 -7.07 -36.13 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.98 Total: 3.04 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.29 Total: -37.71 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.14 Total: 15.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.06 -7.07 -36.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336887246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.421 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds