Wall clock time and date at job start Mon Mar 30 2020 08:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 C 1.53000 * 109.46978 * 174.99889 * 3 2 1 5 5 C 1.53001 * 109.47300 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46757 * 300.00210 * 5 4 3 7 7 C 1.50701 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99827 * 341.48342 * 7 6 5 9 9 N 1.34771 * 119.99821 * 161.48461 * 7 6 5 10 10 C 1.46508 * 119.99894 * 184.13258 * 9 7 6 11 11 C 1.46499 * 120.00550 * 4.13647 * 9 7 6 12 12 H 1.09010 * 109.46516 * 6.27688 * 11 9 7 13 13 C 1.52992 * 109.47587 * 126.27668 * 11 9 7 14 14 C 1.50705 * 109.47093 * 246.28580 * 11 9 7 15 15 H 1.07995 * 119.99772 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99802 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99738 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00026 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.47370 * 90.00644 * 18 16 14 20 20 H 1.48504 * 109.47090 * 210.00053 * 18 16 14 21 21 H 1.48494 * 109.47337 * 329.99952 * 18 16 14 22 22 C 1.53000 * 109.47387 * 59.99843 * 6 5 4 23 23 C 1.52997 * 109.47194 * 294.99909 * 3 2 1 24 24 H 1.08998 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47382 * 300.00070 * 1 2 3 26 26 H 1.09001 * 109.47213 * 60.00264 * 1 2 3 27 27 H 1.08997 * 109.47382 * 239.99930 * 2 1 3 28 28 H 1.09001 * 109.47213 * 119.99736 * 2 1 3 29 29 H 1.08998 * 109.46890 * 54.99796 * 3 2 1 30 30 H 1.08998 * 109.47386 * 60.00211 * 4 3 2 31 31 H 1.09000 * 109.47045 * 300.00005 * 4 3 2 32 32 H 1.08993 * 109.47633 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46896 * 59.99707 * 5 4 3 34 34 H 1.09001 * 109.46757 * 299.99885 * 6 5 4 35 35 H 1.09003 * 109.46756 * 274.74279 * 10 9 7 36 36 H 1.09002 * 109.46932 * 34.74457 * 10 9 7 37 37 H 1.09001 * 109.46857 * 154.74083 * 10 9 7 38 38 H 1.08996 * 109.47247 * 300.00254 * 13 11 9 39 39 H 1.09000 * 109.47153 * 60.00551 * 13 11 9 40 40 H 1.08999 * 109.47345 * 179.97438 * 13 11 9 41 41 H 0.97001 * 120.00259 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47386 * 59.99817 * 22 6 5 43 43 H 1.09000 * 109.47045 * 180.02562 * 22 6 5 44 44 H 1.09001 * 109.46860 * 300.00209 * 23 3 2 45 45 H 1.09001 * 109.47386 * 59.99745 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0748 2.8869 0.1264 6 6 3.6699 3.5715 -1.1807 7 6 4.1727 4.9921 -1.1804 8 8 4.4871 5.5238 -0.1367 9 7 4.2730 5.6717 -2.3399 10 6 4.8464 7.0198 -2.3516 11 6 3.8087 5.0624 -3.5887 12 1 3.3166 4.1147 -3.3695 13 6 2.8190 6.0035 -4.2782 14 6 4.9864 4.8185 -4.4969 15 1 5.9811 5.0906 -4.1761 16 6 4.7938 4.2481 -5.7372 17 7 5.8214 4.0357 -6.5300 18 14 3.0734 3.7769 -6.2916 19 1 2.4491 4.9245 -6.9978 20 1 3.1509 2.6130 -7.2108 21 1 2.2524 3.4184 -5.1073 22 6 2.1451 3.5696 -1.3064 23 6 1.6352 2.1265 -1.3073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6053 1.9815 0.8418 30 1 3.9995 0.9054 -0.7160 31 1 3.8531 0.9571 1.0571 32 1 5.1610 2.8883 0.2164 33 1 3.6401 3.4255 0.9684 34 1 4.1046 3.0328 -2.0227 35 1 4.0689 7.7473 -2.1181 36 1 5.6395 7.0838 -1.6066 37 1 5.2573 7.2313 -3.3388 38 1 1.9673 6.1798 -3.6213 39 1 3.3111 6.9511 -4.4974 40 1 2.4739 5.5503 -5.2076 41 1 5.6860 3.6347 -7.4028 42 1 1.7104 4.1082 -0.4644 43 1 1.8568 4.0569 -2.2379 44 1 2.0699 1.5875 -2.1491 45 1 0.5489 2.1252 -1.3970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336887246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:46 Heat of formation + Delta-G solvation = -81.720369 kcal Electronic energy + Delta-G solvation = -22065.814953 eV Core-core repulsion = 19081.400707 eV Total energy + Delta-G solvation = -2984.414246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40873 -39.15905 -37.50254 -34.81722 -34.56967 -31.93222 -31.75860 -30.41416 -27.95788 -27.11841 -24.92024 -23.68738 -23.25194 -21.82955 -20.74659 -19.69461 -18.89884 -18.07073 -17.15078 -16.67975 -16.11624 -15.75759 -15.54202 -15.09786 -14.98611 -14.64842 -14.43723 -14.29571 -13.99071 -13.86395 -13.55959 -13.45359 -13.06495 -13.03554 -12.97242 -12.71358 -12.52520 -12.40100 -12.12833 -12.04143 -11.90592 -11.59315 -11.52002 -11.38817 -11.31060 -11.20000 -10.84361 -10.78244 -10.46267 -9.44601 -8.31878 -6.39156 1.33503 1.38252 1.48574 1.70213 2.28793 2.30355 3.02716 3.54402 3.74039 3.78180 4.00356 4.17716 4.23752 4.32833 4.45227 4.46959 4.52612 4.53818 4.56992 4.59449 4.62283 4.67513 4.72894 4.78020 4.84353 4.89589 4.94002 4.95971 5.06954 5.14957 5.20031 5.24240 5.26547 5.27986 5.30028 5.37700 5.41100 5.51497 5.57915 5.66814 5.77253 6.13532 6.63930 6.70244 7.21435 7.33669 8.84704 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.007083 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.597943 B = 3952.126956 C = 4918.392829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 C -0.109 4.109 5 C -0.092 4.092 6 C -0.104 4.104 7 C 0.509 3.491 8 O -0.594 6.594 9 N -0.594 5.594 10 C 0.094 3.906 11 C 0.228 3.772 12 H 0.067 0.933 13 C -0.161 4.161 14 C -0.533 4.533 15 H 0.032 0.968 16 C 0.022 3.978 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.263 1.263 20 H -0.298 1.298 21 H -0.232 1.232 22 C -0.106 4.106 23 C -0.111 4.111 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.268 0.732 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 -5.872 10.363 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.146 4.146 5 C -0.130 4.130 6 C -0.125 4.125 7 C 0.299 3.701 8 O -0.476 6.476 9 N -0.324 5.324 10 C -0.049 4.049 11 C 0.125 3.875 12 H 0.085 0.915 13 C -0.219 4.219 14 C -0.571 4.571 15 H 0.050 0.950 16 C -0.177 4.177 17 N -0.582 5.582 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.226 1.226 21 H -0.155 1.155 22 C -0.144 4.144 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.351 -5.634 10.712 17.293 hybrid contribution 0.331 0.176 -0.966 1.036 sum -12.020 -5.458 9.746 16.409 Atomic orbital electron populations 1.21819 0.95345 1.01857 1.02017 1.21540 0.96356 0.95328 1.02186 1.21185 0.94765 0.96622 0.97653 1.21591 0.95888 0.94638 1.02517 1.21287 1.00052 0.96409 0.95263 1.21348 0.98705 0.91398 1.01044 1.21150 0.77259 0.89145 0.82585 1.90561 1.53160 1.71562 1.32363 1.48021 1.59747 1.16730 1.07882 1.21463 0.98178 0.83192 1.02062 1.19374 0.93075 0.93652 0.81368 0.91530 1.22392 0.98962 1.00761 0.99769 1.21393 0.93605 1.41325 1.00803 0.95003 1.25749 1.01058 0.94723 0.96141 1.70035 1.32951 1.44830 1.10365 0.85991 0.80200 0.77585 0.79645 1.18940 1.22613 1.15545 1.21559 0.91469 0.99125 1.02262 1.21653 1.01500 0.93597 0.98092 0.92303 0.92515 0.92598 0.92243 0.91324 0.90814 0.92144 0.90303 0.93363 0.91661 0.89712 0.91809 0.92860 0.91189 0.91668 0.92283 0.93275 0.92297 0.91275 0.91782 0.92233 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 71.98 0.70 -1.58 16 2 C -0.12 -1.96 5.40 30.60 0.17 -1.80 16 3 C -0.08 -1.70 2.19 -10.79 -0.02 -1.72 16 4 C -0.11 -2.51 5.20 30.59 0.16 -2.35 16 5 C -0.09 -2.75 4.65 30.60 0.14 -2.61 16 6 C -0.10 -3.52 1.65 -11.54 -0.02 -3.54 16 7 C 0.51 20.75 6.85 87.66 0.60 21.36 16 8 O -0.59 -26.65 15.72 -3.02 -0.05 -26.69 16 9 N -0.59 -24.68 2.75 -826.77 -2.28 -26.96 16 10 C 0.09 3.60 9.24 127.77 1.18 4.78 16 11 C 0.23 9.77 1.48 44.24 0.07 9.83 16 12 H 0.07 2.75 3.45 -2.38 -0.01 2.74 16 13 C -0.16 -6.06 8.57 71.98 0.62 -5.45 16 14 C -0.53 -28.40 8.69 25.60 0.22 -28.18 16 15 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 16 C 0.02 1.19 5.45 84.65 0.46 1.65 16 17 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 18 Si 0.94 40.35 24.37 68.60 1.67 42.02 16 19 H -0.26 -10.76 6.87 99.48 0.68 -10.08 16 20 H -0.30 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.23 -8.73 6.53 99.48 0.65 -8.08 16 22 C -0.11 -2.99 4.85 30.61 0.15 -2.85 16 23 C -0.11 -2.53 4.96 30.61 0.15 -2.38 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.85 6.57 -2.39 -0.02 0.83 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 34 H 0.08 3.15 7.06 -2.39 -0.02 3.14 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 2.07 7.63 -2.39 -0.02 2.05 16 37 H 0.07 2.77 7.32 -2.39 -0.02 2.75 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.20 7.36 -2.39 -0.02 2.19 16 40 H 0.05 1.87 3.27 -2.39 -0.01 1.86 16 41 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.89 6.39 -2.39 -0.02 1.88 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.62 6.56 -2.39 -0.02 1.60 16 Total: -1.00 -63.74 333.76 5.08 -58.66 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.86 Total: 23.59 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.57 Total: -14.83 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.98 Total: -82.75 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.67 Total: 42.02 kcal Total: -63.74 5.08 -58.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336887246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.062 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds