Wall clock time and date at job start Mon Mar 30 2020 08:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47457 * 2 1 4 4 C 1.53001 * 109.46985 * 295.00372 * 3 2 1 5 5 C 1.52998 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47165 * 59.99797 * 5 4 3 7 7 C 1.50693 * 109.47175 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00484 * 119.99994 * 7 6 5 9 9 N 1.34776 * 119.99939 * 299.99781 * 7 6 5 10 10 C 1.46504 * 120.00200 * 0.02562 * 9 7 6 11 11 C 1.46505 * 120.00069 * 179.97438 * 9 7 6 12 12 H 1.08999 * 109.47087 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47077 * 240.00341 * 11 9 7 14 14 C 1.50701 * 109.47223 * 119.99977 * 11 9 7 15 15 H 1.07997 * 119.99921 * 5.45974 * 14 11 9 16 16 C 1.37878 * 120.00032 * 185.45590 * 14 11 9 17 17 N 1.31514 * 119.99863 * 9.62096 * 16 14 11 18 18 Si 1.86795 * 119.99911 * 189.62019 * 16 14 11 19 19 H 1.48496 * 109.47197 * 84.99258 * 18 16 14 20 20 H 1.48498 * 109.47291 * 204.99667 * 18 16 14 21 21 H 1.48500 * 109.47388 * 324.99330 * 18 16 14 22 22 C 1.53001 * 109.46941 * 300.00241 * 6 5 4 23 23 C 1.52995 * 109.47221 * 175.00058 * 3 2 1 24 24 H 1.09001 * 109.47138 * 60.00192 * 1 2 3 25 25 H 1.08999 * 109.47056 * 299.99764 * 1 2 3 26 26 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47363 * 120.00296 * 2 1 3 28 28 H 1.08999 * 109.47056 * 240.00236 * 2 1 3 29 29 H 1.08995 * 109.46611 * 54.99786 * 3 2 1 30 30 H 1.09005 * 109.46943 * 299.99254 * 4 3 2 31 31 H 1.08995 * 109.47099 * 59.99534 * 4 3 2 32 32 H 1.08994 * 109.47195 * 299.99858 * 5 4 3 33 33 H 1.08992 * 109.47410 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.46979 * 59.99898 * 6 5 4 35 35 H 1.08999 * 109.46965 * 89.99513 * 10 9 7 36 36 H 1.08995 * 109.46683 * 210.00100 * 10 9 7 37 37 H 1.08996 * 109.46700 * 330.00101 * 10 9 7 38 38 H 1.09000 * 109.47074 * 183.28659 * 13 11 9 39 39 H 1.08997 * 109.47128 * 303.28180 * 13 11 9 40 40 H 1.08999 * 109.47453 * 63.28966 * 13 11 9 41 41 H 0.97001 * 119.99801 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.47004 * 299.99642 * 22 6 5 43 43 H 1.09008 * 109.47051 * 180.02562 * 22 6 5 44 44 H 1.09002 * 109.47316 * 299.99999 * 23 3 2 45 45 H 1.09005 * 109.47515 * 60.00251 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3073 5 6 2.1447 3.5692 -1.3071 6 6 3.6696 3.5716 -1.1811 7 6 4.1714 4.9925 -1.1802 8 8 4.7917 5.4161 -0.2280 9 7 3.9308 5.7927 -2.2377 10 6 3.1811 5.2814 -3.3878 11 6 4.4182 7.1744 -2.2366 12 1 4.9486 7.3718 -1.3051 13 6 3.2327 8.1334 -2.3622 14 6 5.3544 7.3777 -3.3999 15 1 5.4971 6.5880 -4.1226 16 6 6.0286 8.5720 -3.5416 17 7 6.0056 9.4593 -2.5711 18 14 6.9747 8.9298 -5.1120 19 1 6.0511 9.4942 -6.1286 20 1 8.0549 9.9082 -4.8271 21 1 7.5704 7.6715 -5.6287 22 6 4.0743 2.8875 0.1262 23 6 3.5648 1.4443 0.1257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6054 1.9815 0.8418 30 1 2.0699 1.5876 -2.1492 31 1 0.5490 2.1253 -1.3968 32 1 1.7098 4.1080 -0.4653 33 1 1.8568 4.0565 -2.2385 34 1 4.1045 3.0327 -2.0229 35 1 2.1170 5.4648 -3.2384 36 1 3.5138 5.7890 -4.2931 37 1 3.3546 4.2100 -3.4873 38 1 3.5991 9.1583 -2.4202 39 1 2.6687 7.8976 -3.2646 40 1 2.5859 8.0275 -1.4913 41 1 6.4797 10.2996 -2.6709 42 1 3.6394 3.4263 0.9681 43 1 5.1607 2.8895 0.2162 44 1 3.8532 0.9570 1.0571 45 1 3.9995 0.9053 -0.7161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336887247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:49 Heat of formation + Delta-G solvation = -70.100806 kcal Electronic energy + Delta-G solvation = -21546.628190 eV Core-core repulsion = 18562.717805 eV Total energy + Delta-G solvation = -2983.910384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89115 -37.91864 -35.31082 -33.96307 -32.70956 -30.80341 -29.76834 -28.66131 -26.16328 -25.17112 -24.33888 -22.50700 -21.72711 -20.36899 -19.74982 -18.22219 -16.54973 -16.07018 -15.64148 -15.22266 -14.79714 -14.43614 -14.13158 -13.85763 -13.59654 -13.37737 -13.10128 -12.67318 -12.47149 -12.24283 -11.97050 -11.81632 -11.67318 -11.59052 -11.41326 -11.16788 -11.00489 -10.97157 -10.88512 -10.74147 -10.69242 -10.44705 -10.24805 -10.17086 -10.09858 -9.81191 -9.19779 -8.70358 -8.37329 -7.52840 -6.06489 -4.11161 3.27921 3.34605 3.36343 3.49491 4.03087 4.42230 4.62118 4.66512 4.77421 5.04635 5.09800 5.18786 5.25522 5.34359 5.44135 5.47968 5.52241 5.58922 5.62007 5.63904 5.78450 5.81757 5.87095 5.94651 5.98190 6.05269 6.13229 6.16141 6.21726 6.31298 6.32371 6.40391 6.52341 6.60391 6.71005 6.79143 7.02764 7.40145 7.59718 7.73965 7.96957 8.21304 8.60450 8.88989 9.15774 9.53982 11.00894 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037604 B = 0.004142 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.420269 B = 6759.141780 C = 6875.362638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.104 4.104 7 C 0.506 3.494 8 O -0.553 6.553 9 N -0.593 5.593 10 C 0.083 3.917 11 C 0.255 3.745 12 H 0.069 0.931 13 C -0.139 4.139 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.097 4.097 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 -16.259 1.506 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.126 4.126 7 C 0.293 3.707 8 O -0.432 6.432 9 N -0.324 5.324 10 C -0.061 4.061 11 C 0.155 3.845 12 H 0.087 0.913 13 C -0.198 4.198 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.135 4.135 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.053 -15.814 2.045 18.850 hybrid contribution 0.517 0.321 -1.023 1.190 sum -9.535 -15.493 1.022 18.220 Atomic orbital electron populations 1.21825 0.96125 1.01209 1.01971 1.21571 0.95705 0.96664 1.01733 1.21231 0.95783 0.95441 0.98382 1.21614 1.00418 0.95446 0.97334 1.21787 0.93733 0.97078 1.03384 1.21295 0.96844 0.94412 1.00021 1.20455 0.80102 0.87276 0.82857 1.90637 1.41662 1.75954 1.34946 1.48184 1.53532 1.14608 1.16070 1.21719 0.94975 0.98373 0.91029 1.18917 0.91545 0.74404 0.99674 0.91321 1.22000 0.97745 1.02805 0.97247 1.21284 1.25750 1.00064 1.09658 0.92269 1.24905 0.95964 0.96373 0.96405 1.69978 1.42752 1.08626 1.30814 0.86577 0.79480 0.78171 0.83578 1.20504 1.21218 1.19995 1.21312 1.01349 0.94280 0.96563 1.21617 0.94919 0.96932 1.01558 0.92420 0.92866 0.93168 0.92251 0.92133 0.91231 0.91998 0.91786 0.91767 0.90229 0.89371 0.93747 0.90452 0.92584 0.90679 0.95017 0.96614 0.92702 0.91445 0.91399 0.92068 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.15 0.36 -0.81 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.13 16 3 C -0.09 -0.89 2.19 -90.62 -0.20 -1.09 16 4 C -0.11 -1.11 4.96 -26.73 -0.13 -1.24 16 5 C -0.12 -1.55 4.84 -26.73 -0.13 -1.68 16 6 C -0.10 -1.59 1.72 -91.77 -0.16 -1.75 16 7 C 0.51 10.69 7.08 -10.99 -0.08 10.61 16 8 O -0.55 -14.07 15.31 5.55 0.08 -13.99 16 9 N -0.59 -12.77 2.75 -175.26 -0.48 -13.25 16 10 C 0.08 1.39 7.72 59.85 0.46 1.85 16 11 C 0.25 6.61 2.50 -69.08 -0.17 6.43 16 12 H 0.07 2.10 6.84 -51.93 -0.36 1.74 16 13 C -0.14 -3.32 9.12 37.16 0.34 -2.99 16 14 C -0.53 -14.46 8.01 -34.44 -0.28 -14.74 16 15 H 0.06 1.58 7.16 -52.49 -0.38 1.21 16 16 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 17 N -0.88 -25.66 12.16 55.43 0.67 -24.98 16 18 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.10 -1.40 4.49 -26.71 -0.12 -1.52 16 23 C -0.11 -1.23 5.21 -26.71 -0.14 -1.37 16 24 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.99 4.53 -51.93 -0.24 0.75 16 34 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 35 H 0.04 0.65 6.95 -51.93 -0.36 0.29 16 36 H 0.08 1.38 6.92 -51.93 -0.36 1.02 16 37 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 38 H 0.07 1.95 6.84 -51.93 -0.36 1.59 16 39 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.07 1.06 8.10 -51.92 -0.42 0.64 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -30.99 338.44 -8.14 -39.13 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.02 Total: -0.46 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.48 Total: -7.68 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.19 Total: -38.24 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.99 -8.14 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336887247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.973 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds