Wall clock time and date at job start Mon Mar 30 2020 08:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47457 * 2 1 4 4 C 1.53001 * 109.46985 * 295.00372 * 3 2 1 5 5 C 1.52998 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47165 * 59.99797 * 5 4 3 7 7 C 1.50693 * 109.47175 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00484 * 119.99994 * 7 6 5 9 9 N 1.34776 * 119.99939 * 299.99781 * 7 6 5 10 10 C 1.46504 * 120.00200 * 0.02562 * 9 7 6 11 11 C 1.46505 * 120.00069 * 179.97438 * 9 7 6 12 12 H 1.08999 * 109.47087 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47077 * 240.00341 * 11 9 7 14 14 C 1.50701 * 109.47223 * 119.99977 * 11 9 7 15 15 H 1.07997 * 119.99921 * 5.45974 * 14 11 9 16 16 C 1.37878 * 120.00032 * 185.45590 * 14 11 9 17 17 N 1.31514 * 119.99863 * 9.62096 * 16 14 11 18 18 Si 1.86795 * 119.99911 * 189.62019 * 16 14 11 19 19 H 1.48496 * 109.47197 * 84.99258 * 18 16 14 20 20 H 1.48498 * 109.47291 * 204.99667 * 18 16 14 21 21 H 1.48500 * 109.47388 * 324.99330 * 18 16 14 22 22 C 1.53001 * 109.46941 * 300.00241 * 6 5 4 23 23 C 1.52995 * 109.47221 * 175.00058 * 3 2 1 24 24 H 1.09001 * 109.47138 * 60.00192 * 1 2 3 25 25 H 1.08999 * 109.47056 * 299.99764 * 1 2 3 26 26 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47363 * 120.00296 * 2 1 3 28 28 H 1.08999 * 109.47056 * 240.00236 * 2 1 3 29 29 H 1.08995 * 109.46611 * 54.99786 * 3 2 1 30 30 H 1.09005 * 109.46943 * 299.99254 * 4 3 2 31 31 H 1.08995 * 109.47099 * 59.99534 * 4 3 2 32 32 H 1.08994 * 109.47195 * 299.99858 * 5 4 3 33 33 H 1.08992 * 109.47410 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.46979 * 59.99898 * 6 5 4 35 35 H 1.08999 * 109.46965 * 89.99513 * 10 9 7 36 36 H 1.08995 * 109.46683 * 210.00100 * 10 9 7 37 37 H 1.08996 * 109.46700 * 330.00101 * 10 9 7 38 38 H 1.09000 * 109.47074 * 183.28659 * 13 11 9 39 39 H 1.08997 * 109.47128 * 303.28180 * 13 11 9 40 40 H 1.08999 * 109.47453 * 63.28966 * 13 11 9 41 41 H 0.97001 * 119.99801 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.47004 * 299.99642 * 22 6 5 43 43 H 1.09008 * 109.47051 * 180.02562 * 22 6 5 44 44 H 1.09002 * 109.47316 * 299.99999 * 23 3 2 45 45 H 1.09005 * 109.47515 * 60.00251 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 -1.3073 5 6 2.1447 3.5692 -1.3071 6 6 3.6696 3.5716 -1.1811 7 6 4.1714 4.9925 -1.1802 8 8 4.7917 5.4161 -0.2280 9 7 3.9308 5.7927 -2.2377 10 6 3.1811 5.2814 -3.3878 11 6 4.4182 7.1744 -2.2366 12 1 4.9486 7.3718 -1.3051 13 6 3.2327 8.1334 -2.3622 14 6 5.3544 7.3777 -3.3999 15 1 5.4971 6.5880 -4.1226 16 6 6.0286 8.5720 -3.5416 17 7 6.0056 9.4593 -2.5711 18 14 6.9747 8.9298 -5.1120 19 1 6.0511 9.4942 -6.1286 20 1 8.0549 9.9082 -4.8271 21 1 7.5704 7.6715 -5.6287 22 6 4.0743 2.8875 0.1262 23 6 3.5648 1.4443 0.1257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6054 1.9815 0.8418 30 1 2.0699 1.5876 -2.1492 31 1 0.5490 2.1253 -1.3968 32 1 1.7098 4.1080 -0.4653 33 1 1.8568 4.0565 -2.2385 34 1 4.1045 3.0327 -2.0229 35 1 2.1170 5.4648 -3.2384 36 1 3.5138 5.7890 -4.2931 37 1 3.3546 4.2100 -3.4873 38 1 3.5991 9.1583 -2.4202 39 1 2.6687 7.8976 -3.2646 40 1 2.5859 8.0275 -1.4913 41 1 6.4797 10.2996 -2.6709 42 1 3.6394 3.4263 0.9681 43 1 5.1607 2.8895 0.2162 44 1 3.8532 0.9570 1.0571 45 1 3.9995 0.9053 -0.7161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336887247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:49 Heat of formation + Delta-G solvation = -87.563276 kcal Electronic energy + Delta-G solvation = -21547.385419 eV Core-core repulsion = 18562.717805 eV Total energy + Delta-G solvation = -2984.667614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31165 -39.12287 -37.14243 -35.16821 -34.43302 -32.04342 -31.20178 -29.82015 -27.65383 -27.27677 -25.38930 -23.48635 -23.14114 -21.58897 -20.70318 -19.83681 -18.49693 -17.76436 -17.20292 -16.51978 -16.26760 -15.62889 -15.48464 -14.88851 -14.79516 -14.58144 -14.30150 -14.16282 -13.76283 -13.67340 -13.51316 -13.17316 -12.91340 -12.86432 -12.73589 -12.65162 -12.55622 -12.36418 -12.25193 -12.09769 -12.04616 -11.92272 -11.58106 -11.31007 -11.23790 -11.10257 -10.75363 -10.54007 -10.32345 -9.30306 -8.17378 -6.31110 1.41020 1.42182 1.51809 1.85122 2.33673 2.52315 3.11458 3.61301 3.76385 3.80759 4.09048 4.18596 4.25274 4.34764 4.49034 4.55201 4.59378 4.61803 4.66149 4.71485 4.74335 4.79972 4.83786 4.87799 4.96111 5.00911 5.03060 5.13312 5.19886 5.23138 5.28723 5.29947 5.34633 5.41177 5.44020 5.46939 5.55777 5.61317 5.67112 5.68953 6.01438 6.13278 6.77960 6.87398 7.33077 7.52129 8.89620 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037604 B = 0.004142 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.420269 B = 6759.141780 C = 6875.362638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.091 4.091 7 C 0.492 3.508 8 O -0.611 6.611 9 N -0.599 5.599 10 C 0.078 3.922 11 C 0.257 3.743 12 H 0.008 0.992 13 C -0.124 4.124 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.268 1.268 22 C -0.096 4.096 23 C -0.104 4.104 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -18.730 -0.727 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.107 4.107 4 C -0.141 4.141 5 C -0.154 4.154 6 C -0.112 4.112 7 C 0.282 3.718 8 O -0.493 6.493 9 N -0.329 5.329 10 C -0.064 4.064 11 C 0.155 3.845 12 H 0.026 0.974 13 C -0.183 4.183 14 C -0.579 4.579 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.560 5.560 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.193 1.193 22 C -0.134 4.134 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.581 -18.319 -0.219 21.674 hybrid contribution 0.996 1.099 -0.254 1.505 sum -10.585 -17.220 -0.473 20.219 Atomic orbital electron populations 1.21827 0.95570 1.01808 1.01950 1.21520 0.96129 0.95216 1.02312 1.21218 0.94713 0.96680 0.98135 1.21601 1.01459 0.93224 0.97822 1.21781 0.91223 0.99281 1.03154 1.21310 0.98806 0.90020 1.01114 1.21609 0.79054 0.89401 0.81748 1.90604 1.44193 1.77487 1.37059 1.48216 1.53714 1.13178 1.17805 1.22014 0.95683 1.00161 0.88542 1.18525 0.91991 0.77551 0.96434 0.97374 1.21784 0.97143 1.00720 0.98645 1.21578 1.26112 1.00321 1.09892 0.91806 1.25804 0.97054 0.96175 0.99567 1.70132 1.43837 1.09090 1.32897 0.85468 0.78066 0.78000 0.79488 1.18970 1.21422 1.19277 1.21291 0.99987 0.96619 0.95486 1.21570 0.95834 0.94066 1.02664 0.92064 0.93296 0.92311 0.92028 0.91250 0.92278 0.90386 0.90117 0.93360 0.89319 0.87273 0.91133 0.91372 0.89150 0.93281 0.92560 0.95965 0.92712 0.93593 0.93573 0.91271 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.17 16 2 C -0.11 -1.51 5.40 30.59 0.17 -1.35 16 3 C -0.09 -1.51 2.19 -10.79 -0.02 -1.54 16 4 C -0.10 -1.70 4.96 30.59 0.15 -1.54 16 5 C -0.12 -2.69 4.84 30.59 0.15 -2.54 16 6 C -0.09 -2.69 1.72 -11.54 -0.02 -2.71 16 7 C 0.49 21.27 7.08 87.65 0.62 21.89 16 8 O -0.61 -33.06 15.31 -3.05 -0.05 -33.10 16 9 N -0.60 -25.89 2.75 -826.80 -2.28 -28.16 16 10 C 0.08 2.41 7.72 127.77 0.99 3.40 16 11 C 0.26 13.77 2.50 44.24 0.11 13.88 16 12 H 0.01 0.54 6.84 -2.39 -0.02 0.52 16 13 C -0.12 -6.03 9.12 71.98 0.66 -5.37 16 14 C -0.54 -29.94 8.01 25.60 0.21 -29.74 16 15 H 0.06 3.39 7.16 -2.91 -0.02 3.37 16 16 C 0.01 0.76 5.17 84.65 0.44 1.20 16 17 N -0.92 -55.20 12.16 21.45 0.26 -54.94 16 18 Si 0.97 43.49 29.55 68.60 2.03 45.52 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 C -0.10 -2.76 4.49 30.61 0.14 -2.62 16 23 C -0.10 -2.05 5.21 30.61 0.16 -1.89 16 24 H 0.06 0.70 6.57 -2.39 -0.02 0.68 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.88 4.53 -2.39 -0.01 1.87 16 34 H 0.11 2.79 7.40 -2.39 -0.02 2.77 16 35 H 0.07 1.84 6.95 -2.39 -0.02 1.82 16 36 H 0.07 2.26 6.92 -2.39 -0.02 2.25 16 37 H 0.09 2.17 6.01 -2.39 -0.01 2.15 16 38 H 0.05 2.61 6.84 -2.39 -0.02 2.60 16 39 H 0.06 2.39 7.56 -2.39 -0.02 2.37 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -71.57 338.44 5.33 -66.23 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.94 Total: 14.55 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.43 Total: -10.10 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.02 Total: -83.10 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -71.57 5.33 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336887247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.332 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds