Wall clock time and date at job start Mon Mar 30 2020 07:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.52074 * 2 1 4 4 C 1.53008 * 117.49577 * 128.62071 * 3 2 1 5 5 C 1.52997 * 59.99885 * 252.50997 * 4 3 2 6 6 C 1.53114 * 109.51955 * 120.12931 * 2 1 3 7 7 C 1.53040 * 109.27763 * 62.37728 * 6 2 1 8 8 N 1.46850 * 109.57577 * 59.08384 * 7 6 2 9 9 C 1.46897 * 111.00023 * 174.19175 * 8 7 6 10 10 C 1.52999 * 109.47016 * 48.39880 * 9 8 7 11 11 O 1.42903 * 109.47170 * 66.31071 * 10 9 8 12 12 C 1.42894 * 113.99863 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99665 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00045 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99941 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46999 * 89.99454 * 17 15 13 19 19 H 1.48502 * 109.46779 * 209.99318 * 17 15 13 20 20 H 1.48493 * 109.47103 * 329.99500 * 17 15 13 21 21 C 1.46846 * 111.19477 * 298.29033 * 8 7 6 22 22 C 1.53038 * 109.52606 * 61.74471 * 21 8 7 23 23 H 1.09001 * 109.47054 * 59.99704 * 1 2 3 24 24 H 1.09005 * 109.47429 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47479 * 299.99974 * 1 2 3 26 26 H 1.08999 * 115.55544 * 274.33015 * 3 2 1 27 27 H 1.08996 * 117.49656 * 0.02562 * 4 3 2 28 28 H 1.08996 * 117.49731 * 145.01897 * 4 3 2 29 29 H 1.08999 * 117.49948 * 252.50539 * 5 4 3 30 30 H 1.09005 * 117.51584 * 107.48189 * 5 4 3 31 31 H 1.09003 * 109.50289 * 182.25880 * 6 2 1 32 32 H 1.09003 * 109.50523 * 302.37213 * 6 2 1 33 33 H 1.08996 * 109.41217 * 299.06504 * 7 6 2 34 34 H 1.09004 * 109.45441 * 179.12188 * 7 6 2 35 35 H 1.09004 * 109.46898 * 168.39819 * 9 8 7 36 36 H 1.08998 * 109.47393 * 288.39533 * 9 8 7 37 37 H 1.09002 * 109.47084 * 186.30751 * 10 9 8 38 38 H 1.09000 * 109.47015 * 306.30334 * 10 9 8 39 39 H 1.09004 * 109.47399 * 299.99686 * 12 11 10 40 40 H 1.09003 * 109.47437 * 59.99178 * 12 11 10 41 41 H 0.96995 * 119.99537 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.46214 * 301.72562 * 21 8 7 43 43 H 1.09001 * 109.46221 * 181.75371 * 21 8 7 44 44 H 1.08995 * 109.50475 * 180.88080 * 22 21 8 45 45 H 1.08997 * 109.53637 * 60.77584 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 3.0758 1.8248 1.0604 5 6 1.6378 2.3346 1.1754 6 6 2.0416 -0.7244 1.2482 7 6 1.5792 -2.1828 1.2111 8 7 2.0950 -2.8319 -0.0009 9 6 1.7862 -4.2680 -0.0010 10 6 0.3090 -4.4721 0.3415 11 8 -0.5013 -3.9381 -0.7075 12 6 -1.9059 -4.0775 -0.4851 13 6 -2.6599 -3.4832 -1.6467 14 1 -2.1203 -3.0433 -2.4724 15 6 -4.0385 -3.5018 -1.6558 16 7 -4.6965 -2.9826 -2.6693 17 14 -4.9718 -4.2632 -0.2279 18 1 -5.2400 -3.2240 0.7985 19 1 -6.2588 -4.8189 -0.7179 20 1 -4.1585 -5.3519 0.3707 21 6 1.5779 -2.1823 -1.2121 22 6 2.0417 -0.7243 -1.2483 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.1284 1.9100 -0.9806 27 1 3.3923 1.0491 1.7576 28 1 3.8438 2.5445 0.7775 29 1 1.4599 3.3898 0.9682 30 1 1.0078 1.8945 1.9484 31 1 3.1309 -0.6893 1.2685 32 1 1.6447 -0.2383 2.1394 33 1 0.4898 -2.2173 1.2060 34 1 1.9550 -2.7053 2.0909 35 1 1.9912 -4.6837 -0.9876 36 1 2.4044 -4.7727 0.7414 37 1 0.1054 -5.5372 0.4516 38 1 0.0785 -3.9597 1.2755 39 1 -2.1560 -5.1344 -0.3918 40 1 -2.1822 -3.5567 0.4317 41 1 -5.6664 -2.9954 -2.6755 42 1 0.4886 -2.2168 -1.2059 43 1 1.9527 -2.7044 -2.0925 44 1 1.6448 -0.2382 -2.1394 45 1 3.1309 -0.6887 -1.2688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339200998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:58 Heat of formation + Delta-G solvation = -25.496740 kcal Electronic energy + Delta-G solvation = -22011.127841 eV Core-core repulsion = 19029.151635 eV Total energy + Delta-G solvation = -2981.976207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09100 -37.78448 -36.10674 -33.45179 -32.54533 -30.61151 -29.36599 -27.79869 -26.45526 -24.19270 -23.35671 -22.16591 -21.96740 -21.45926 -20.09311 -17.73750 -16.85984 -16.36350 -15.79740 -15.44199 -15.04930 -14.86517 -14.35178 -14.15225 -13.88886 -13.53530 -13.27757 -12.90979 -12.62129 -12.24292 -11.93291 -11.77628 -11.67263 -11.62317 -11.35431 -11.08484 -10.93676 -10.87247 -10.78775 -10.66878 -10.58762 -10.49905 -9.99996 -9.88908 -9.82349 -9.60234 -9.23115 -8.89015 -8.52058 -7.77560 -6.15560 -4.14759 3.20694 3.28302 3.29319 3.85835 4.22322 4.31592 4.63500 4.66555 4.87771 4.96591 5.07433 5.15933 5.16965 5.27238 5.47123 5.53472 5.59998 5.62718 5.67473 5.70196 5.78763 5.82991 5.88414 5.91850 5.96379 6.04118 6.09510 6.12552 6.15807 6.21042 6.27829 6.35635 6.44443 6.47701 6.55246 6.56500 6.69770 6.92381 6.96215 7.42127 7.46504 7.55777 7.94924 8.60479 8.95120 9.43883 10.97281 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.005592 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.019113 B = 5005.727863 C = 5700.411937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C -0.135 4.135 4 C -0.187 4.187 5 C -0.181 4.181 6 C -0.103 4.103 7 C 0.047 3.953 8 N -0.531 5.531 9 C 0.058 3.942 10 C 0.018 3.982 11 O -0.374 6.374 12 C 0.168 3.832 13 C -0.517 4.517 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.043 3.957 22 C -0.100 4.100 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.001 0.999 40 H -0.005 1.005 41 H 0.266 0.734 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.502 5.197 8.721 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 C -0.153 4.153 4 C -0.223 4.223 5 C -0.218 4.218 6 C -0.141 4.141 7 C -0.081 4.081 8 N -0.255 5.255 9 C -0.070 4.070 10 C -0.061 4.061 11 O -0.293 6.293 12 C 0.093 3.907 13 C -0.555 4.555 14 H 0.100 0.900 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.700 3.300 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.085 4.085 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.894 5.377 8.469 17.958 hybrid contribution -1.704 -0.595 0.984 2.056 sum 13.190 4.782 9.452 16.917 Atomic orbital electron populations 1.21960 0.93701 1.03164 1.01390 1.20083 0.95681 0.91499 0.95643 1.22356 1.02909 0.95797 0.94285 1.23103 0.92328 1.03598 1.03318 1.22906 0.97997 0.99250 1.01683 1.21732 1.00889 0.94412 0.97047 1.22162 0.98613 0.94537 0.92762 1.62207 1.58688 1.01979 1.02580 1.22243 0.92451 0.89580 1.02741 1.23168 0.93123 0.97622 0.92233 1.87939 1.18502 1.80376 1.42502 1.20596 0.77931 0.95157 0.97051 1.20845 0.90909 1.38671 1.05050 0.89968 1.24748 0.97133 0.94977 0.95921 1.69872 1.07893 1.45037 1.30398 0.86893 0.79879 0.80176 0.83056 1.19968 1.20742 1.19214 1.22360 1.01345 0.93233 0.91520 1.21598 1.00445 0.95115 0.96631 0.92579 0.90986 0.93343 0.88166 0.88258 0.89526 0.89350 0.88916 0.91232 0.92148 0.93442 0.91736 0.90213 0.90156 0.94271 0.93994 0.98126 0.98745 0.92361 0.90032 0.91580 0.91790 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 7.74 37.16 0.29 -1.96 16 2 C -0.03 -0.38 0.63 -154.39 -0.10 -0.48 16 3 C -0.14 -1.57 5.15 -90.62 -0.47 -2.04 16 4 C -0.19 -1.89 9.57 -26.73 -0.26 -2.14 16 5 C -0.18 -1.92 9.40 -26.73 -0.25 -2.18 16 6 C -0.10 -1.29 3.48 -26.65 -0.09 -1.38 16 7 C 0.05 0.66 4.24 -3.83 -0.02 0.64 16 8 N -0.53 -7.86 4.86 -234.67 -1.14 -9.00 16 9 C 0.06 0.85 6.01 -3.83 -0.02 0.82 16 10 C 0.02 0.30 5.52 37.16 0.21 0.51 16 11 O -0.37 -8.25 7.55 -35.23 -0.27 -8.52 16 12 C 0.17 4.17 4.76 36.01 0.17 4.34 16 13 C -0.52 -14.99 9.99 -34.44 -0.34 -15.33 16 14 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 17 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.04 0.69 4.71 -3.83 -0.02 0.67 16 22 C -0.10 -1.41 4.87 -26.65 -0.13 -1.54 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.32 4.93 -51.93 -0.26 1.06 16 25 H 0.05 0.69 7.29 -51.93 -0.38 0.31 16 26 H 0.10 1.15 8.12 -51.93 -0.42 0.73 16 27 H 0.10 0.99 5.83 -51.93 -0.30 0.69 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.00 7.11 -51.93 -0.37 0.64 16 31 H 0.07 0.84 6.82 -51.93 -0.35 0.49 16 32 H 0.06 0.71 7.27 -51.93 -0.38 0.33 16 33 H 0.05 0.77 4.82 -51.93 -0.25 0.52 16 34 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.08 1.18 7.87 -51.93 -0.41 0.77 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.70 6.05 -51.93 -0.31 0.39 16 39 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 40 H -0.01 -0.12 7.57 -51.93 -0.39 -0.52 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.61 4.17 -51.93 -0.22 1.39 16 43 H 0.07 1.08 7.96 -51.93 -0.41 0.66 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -29.71 330.64 -9.25 -38.96 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.80 Total: 1.42 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.13 Total: -17.99 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.37 Total: -35.47 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.27 Total: -8.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.71 -9.25 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339200998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.460 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds