Wall clock time and date at job start Mon Mar 30 2020 07:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.52074 * 2 1 4 4 C 1.53008 * 117.49577 * 128.62071 * 3 2 1 5 5 C 1.52997 * 59.99885 * 252.50997 * 4 3 2 6 6 C 1.53114 * 109.51955 * 120.12931 * 2 1 3 7 7 C 1.53040 * 109.27763 * 62.37728 * 6 2 1 8 8 N 1.46850 * 109.57577 * 59.08384 * 7 6 2 9 9 C 1.46897 * 111.00023 * 174.19175 * 8 7 6 10 10 C 1.52999 * 109.47016 * 48.39880 * 9 8 7 11 11 O 1.42903 * 109.47170 * 66.31071 * 10 9 8 12 12 C 1.42894 * 113.99863 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99665 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00045 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99941 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46999 * 89.99454 * 17 15 13 19 19 H 1.48502 * 109.46779 * 209.99318 * 17 15 13 20 20 H 1.48493 * 109.47103 * 329.99500 * 17 15 13 21 21 C 1.46846 * 111.19477 * 298.29033 * 8 7 6 22 22 C 1.53038 * 109.52606 * 61.74471 * 21 8 7 23 23 H 1.09001 * 109.47054 * 59.99704 * 1 2 3 24 24 H 1.09005 * 109.47429 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47479 * 299.99974 * 1 2 3 26 26 H 1.08999 * 115.55544 * 274.33015 * 3 2 1 27 27 H 1.08996 * 117.49656 * 0.02562 * 4 3 2 28 28 H 1.08996 * 117.49731 * 145.01897 * 4 3 2 29 29 H 1.08999 * 117.49948 * 252.50539 * 5 4 3 30 30 H 1.09005 * 117.51584 * 107.48189 * 5 4 3 31 31 H 1.09003 * 109.50289 * 182.25880 * 6 2 1 32 32 H 1.09003 * 109.50523 * 302.37213 * 6 2 1 33 33 H 1.08996 * 109.41217 * 299.06504 * 7 6 2 34 34 H 1.09004 * 109.45441 * 179.12188 * 7 6 2 35 35 H 1.09004 * 109.46898 * 168.39819 * 9 8 7 36 36 H 1.08998 * 109.47393 * 288.39533 * 9 8 7 37 37 H 1.09002 * 109.47084 * 186.30751 * 10 9 8 38 38 H 1.09000 * 109.47015 * 306.30334 * 10 9 8 39 39 H 1.09004 * 109.47399 * 299.99686 * 12 11 10 40 40 H 1.09003 * 109.47437 * 59.99178 * 12 11 10 41 41 H 0.96995 * 119.99537 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.46214 * 301.72562 * 21 8 7 43 43 H 1.09001 * 109.46221 * 181.75371 * 21 8 7 44 44 H 1.08995 * 109.50475 * 180.88080 * 22 21 8 45 45 H 1.08997 * 109.53637 * 60.77584 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 3.0758 1.8248 1.0604 5 6 1.6378 2.3346 1.1754 6 6 2.0416 -0.7244 1.2482 7 6 1.5792 -2.1828 1.2111 8 7 2.0950 -2.8319 -0.0009 9 6 1.7862 -4.2680 -0.0010 10 6 0.3090 -4.4721 0.3415 11 8 -0.5013 -3.9381 -0.7075 12 6 -1.9059 -4.0775 -0.4851 13 6 -2.6599 -3.4832 -1.6467 14 1 -2.1203 -3.0433 -2.4724 15 6 -4.0385 -3.5018 -1.6558 16 7 -4.6965 -2.9826 -2.6693 17 14 -4.9718 -4.2632 -0.2279 18 1 -5.2400 -3.2240 0.7985 19 1 -6.2588 -4.8189 -0.7179 20 1 -4.1585 -5.3519 0.3707 21 6 1.5779 -2.1823 -1.2121 22 6 2.0417 -0.7243 -1.2483 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.1284 1.9100 -0.9806 27 1 3.3923 1.0491 1.7576 28 1 3.8438 2.5445 0.7775 29 1 1.4599 3.3898 0.9682 30 1 1.0078 1.8945 1.9484 31 1 3.1309 -0.6893 1.2685 32 1 1.6447 -0.2383 2.1394 33 1 0.4898 -2.2173 1.2060 34 1 1.9550 -2.7053 2.0909 35 1 1.9912 -4.6837 -0.9876 36 1 2.4044 -4.7727 0.7414 37 1 0.1054 -5.5372 0.4516 38 1 0.0785 -3.9597 1.2755 39 1 -2.1560 -5.1344 -0.3918 40 1 -2.1822 -3.5567 0.4317 41 1 -5.6664 -2.9954 -2.6755 42 1 0.4886 -2.2168 -1.2059 43 1 1.9527 -2.7044 -2.0925 44 1 1.6448 -0.2382 -2.1394 45 1 3.1309 -0.6887 -1.2688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339200998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:57 Heat of formation + Delta-G solvation = -43.915844 kcal Electronic energy + Delta-G solvation = -22011.926554 eV Core-core repulsion = 19029.151635 eV Total energy + Delta-G solvation = -2982.774919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21556 -39.11681 -37.48527 -35.00585 -34.33915 -31.75684 -30.91704 -29.57512 -27.77587 -25.39529 -24.48838 -23.98333 -22.98241 -22.70972 -21.22263 -19.17334 -18.73433 -17.50694 -17.48352 -16.76869 -16.53533 -15.97799 -15.90730 -15.41074 -15.32336 -14.84375 -14.62496 -14.46593 -14.13998 -13.69321 -13.38023 -13.12595 -12.99607 -12.81174 -12.72987 -12.62108 -12.46704 -12.20954 -12.10506 -11.88998 -11.79158 -11.68196 -11.54570 -11.38231 -11.04384 -10.94422 -10.83385 -10.59119 -10.34681 -9.06358 -8.39890 -6.47090 1.28414 1.30722 1.41352 2.24944 2.91587 2.92873 2.99784 3.21964 3.66544 3.81393 3.98536 4.13069 4.17352 4.20617 4.23206 4.36682 4.40785 4.45336 4.52530 4.54967 4.58691 4.65003 4.73423 4.79285 4.82372 4.88432 4.91732 4.94571 4.98365 5.04002 5.12574 5.16797 5.20799 5.25960 5.32027 5.36285 5.37826 5.41828 5.52318 5.63975 5.90202 6.19418 6.25289 6.56392 6.70229 7.17108 8.76979 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.005592 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.019113 B = 5005.727863 C = 5700.411937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.023 4.023 3 C -0.151 4.151 4 C -0.170 4.170 5 C -0.181 4.181 6 C -0.096 4.096 7 C 0.046 3.954 8 N -0.523 5.523 9 C 0.061 3.939 10 C 0.010 3.990 11 O -0.392 6.392 12 C 0.181 3.819 13 C -0.536 4.536 14 H 0.031 0.969 15 C 0.017 3.983 16 N -0.940 5.940 17 Si 0.949 3.051 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.249 1.249 21 C 0.047 3.953 22 C -0.096 4.096 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.006 0.994 40 H 0.002 0.998 41 H 0.272 0.728 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 4.891 11.637 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.170 4.170 4 C -0.206 4.206 5 C -0.218 4.218 6 C -0.134 4.134 7 C -0.082 4.082 8 N -0.247 5.247 9 C -0.067 4.067 10 C -0.068 4.068 11 O -0.311 6.311 12 C 0.105 3.895 13 C -0.574 4.574 14 H 0.049 0.951 15 C -0.182 4.182 16 N -0.579 5.579 17 Si 0.771 3.229 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.172 1.172 21 C -0.081 4.081 22 C -0.133 4.133 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.336 5.069 11.388 20.549 hybrid contribution -2.088 -0.467 -0.013 2.140 sum 14.249 4.602 11.375 18.804 Atomic orbital electron populations 1.21882 0.95950 1.00759 1.00998 1.19987 0.93666 0.92964 0.95705 1.22248 1.05002 0.94725 0.94983 1.23173 0.92129 1.03553 1.01771 1.22965 0.98662 0.99484 1.00709 1.21708 1.01607 0.93234 0.96834 1.22239 0.97118 0.95885 0.92956 1.62282 1.57944 1.02156 1.02270 1.22375 0.91029 0.89717 1.03599 1.23497 0.93866 0.98125 0.91318 1.87951 1.17356 1.81097 1.44713 1.20251 0.79389 0.94720 0.95124 1.21066 0.91770 1.39247 1.05342 0.95075 1.25755 0.98001 0.95189 0.99206 1.70027 1.08604 1.46389 1.32924 0.85700 0.78397 0.79840 0.78980 1.18601 1.19724 1.17241 1.22220 0.98815 0.94886 0.92207 1.21552 1.01092 0.93673 0.97013 0.94259 0.94330 0.92345 0.88385 0.87584 0.88125 0.88494 0.89128 0.89822 0.90884 0.96078 0.89460 0.90840 0.86501 0.93061 0.93195 0.97597 0.98067 0.91863 0.94025 0.92489 0.92704 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 7.74 71.98 0.56 -3.91 16 2 C -0.02 -0.60 0.63 -52.10 -0.03 -0.63 16 3 C -0.15 -3.30 5.15 -10.79 -0.06 -3.35 16 4 C -0.17 -2.91 9.57 30.60 0.29 -2.62 16 5 C -0.18 -3.46 9.40 30.59 0.29 -3.17 16 6 C -0.10 -2.19 3.48 30.65 0.11 -2.09 16 7 C 0.05 1.20 4.24 86.33 0.37 1.57 16 8 N -0.52 -14.90 4.86 -896.36 -4.36 -19.25 16 9 C 0.06 1.67 6.01 86.30 0.52 2.19 16 10 C 0.01 0.34 5.52 71.98 0.40 0.73 16 11 O -0.39 -17.75 7.55 -148.98 -1.13 -18.87 16 12 C 0.18 9.10 4.76 71.24 0.34 9.44 16 13 C -0.54 -32.56 9.99 25.60 0.26 -32.31 16 14 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 15 C 0.02 0.99 5.47 84.65 0.46 1.45 16 16 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 17 Si 0.95 43.76 27.47 68.60 1.88 45.65 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 21 C 0.05 1.56 4.71 86.33 0.41 1.97 16 22 C -0.10 -2.71 4.87 30.65 0.15 -2.56 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.50 4.93 -2.38 -0.01 1.48 16 25 H 0.06 1.70 7.29 -2.39 -0.02 1.68 16 26 H 0.10 2.17 8.12 -2.39 -0.02 2.15 16 27 H 0.11 1.70 5.83 -2.39 -0.01 1.69 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.77 7.11 -2.38 -0.02 1.76 16 31 H 0.08 1.72 6.82 -2.39 -0.02 1.70 16 32 H 0.07 1.50 7.27 -2.39 -0.02 1.49 16 33 H 0.02 0.68 4.82 -2.39 -0.01 0.67 16 34 H 0.09 1.91 8.12 -2.38 -0.02 1.89 16 35 H 0.07 2.11 7.87 -2.39 -0.02 2.10 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.60 6.05 -2.39 -0.01 1.58 16 39 H 0.01 0.31 7.20 -2.38 -0.02 0.29 16 40 H 0.00 0.08 7.57 -2.39 -0.02 0.06 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.04 1.76 4.17 -2.39 -0.01 1.75 16 43 H 0.06 1.94 7.96 -2.39 -0.02 1.93 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -67.25 330.64 1.65 -65.60 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.89 Total: 19.12 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.05 Total: -33.29 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -4.06 Total: -78.20 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.13 Total: -18.87 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -67.25 1.65 -65.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339200998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.682 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds