Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00698 * 3 2 1 6 6 H 1.48501 * 109.46963 * 60.00430 * 3 2 1 7 7 C 1.37878 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00748 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47063 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47166 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00087 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47271 * 35.00061 * 12 11 10 14 14 C 1.52997 * 109.46908 * 274.99791 * 12 11 10 15 15 C 1.53006 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 59.99836 * 15 14 12 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 20 20 H 1.09007 * 110.80097 * 303.62347 * 19 17 16 21 21 C 1.54815 * 110.90768 * 179.97438 * 19 17 16 22 22 C 1.54101 * 104.18457 * 220.91649 * 21 19 17 23 23 O 1.43737 * 107.29415 * 357.97030 * 22 21 19 24 24 C 1.44377 * 106.98046 * 26.51073 * 23 22 21 25 25 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 26 26 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47589 * 60.00025 * 9 7 2 28 28 H 1.09006 * 109.46658 * 299.99870 * 9 7 2 29 29 H 1.09001 * 109.47015 * 59.99990 * 10 9 7 30 30 H 1.08996 * 109.47273 * 299.99872 * 10 9 7 31 31 H 1.00898 * 110.99683 * 56.03844 * 11 10 9 32 32 H 1.09001 * 109.47375 * 300.00206 * 14 12 11 33 33 H 1.09000 * 109.47140 * 60.00224 * 14 12 11 34 34 H 1.08998 * 109.46505 * 299.99708 * 15 14 12 35 35 H 1.08996 * 109.46884 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 1.09003 * 110.48528 * 339.59316 * 21 19 17 39 39 H 1.08995 * 110.48692 * 102.23860 * 21 19 17 40 40 H 1.09003 * 109.87762 * 117.39542 * 22 21 19 41 41 H 1.09000 * 109.87839 * 238.39084 * 22 21 19 42 42 H 1.08994 * 110.62009 * 201.43396 * 24 23 22 43 43 H 1.09006 * 110.61235 * 78.43836 * 24 23 22 44 44 H 1.08992 * 109.47554 * 59.99639 * 25 17 16 45 45 H 1.09004 * 109.47108 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9343 0.0001 12 6 2.4354 -6.0759 -0.0005 13 1 3.3187 -5.8285 0.5883 14 6 2.8529 -6.3932 -1.4378 15 6 3.8153 -7.5827 -1.4385 16 6 3.1202 -8.8015 -0.8285 17 6 2.7026 -8.4841 0.6088 18 1 3.5860 -8.2371 1.1977 19 6 2.0081 -9.7032 1.2190 20 1 1.1571 -10.0089 0.6103 21 6 1.5713 -9.4181 2.6767 22 6 1.9006 -10.7207 3.4312 23 8 2.4207 -11.6525 2.4683 24 6 3.0064 -10.8745 1.4024 25 6 1.7402 -7.2948 0.6095 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 0.8741 -4.9845 -0.7810 32 1 1.9696 -6.6406 -2.0266 33 1 3.3477 -5.5247 -1.8725 34 1 4.6986 -7.3355 -0.8497 35 1 4.1131 -7.8084 -2.4625 36 1 3.8060 -9.6487 -0.8286 37 1 2.2369 -9.0485 -1.4174 38 1 2.1395 -8.5842 3.0890 39 1 0.5020 -9.2113 2.7210 40 1 2.6488 -10.5251 4.1993 41 1 0.9966 -11.1227 3.8886 42 1 3.0765 -11.4657 0.4894 43 1 3.9876 -10.5003 1.6949 44 1 0.8569 -7.5417 0.0206 45 1 1.4424 -7.0690 1.6334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341361084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = -85.992432 kcal Electronic energy + Delta-G solvation = -20698.489360 eV Core-core repulsion = 17713.889863 eV Total energy + Delta-G solvation = -2984.599497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13754 -38.44387 -35.40507 -33.32822 -32.60902 -30.48056 -30.11764 -28.49816 -27.27508 -24.11674 -23.11940 -22.82077 -21.27463 -20.73326 -20.24624 -19.72952 -16.68386 -16.44472 -16.16916 -15.47668 -15.10327 -14.68700 -14.46637 -14.33348 -13.96939 -13.71150 -13.49870 -13.00326 -12.91614 -12.56934 -12.51264 -12.02692 -11.86646 -11.46179 -11.34232 -11.28194 -11.10991 -10.97309 -10.92966 -10.77441 -10.59445 -10.48444 -10.26546 -10.16139 -9.92567 -9.88773 -9.32018 -9.11107 -8.35774 -7.74348 -5.99974 -4.02431 3.30680 3.38042 3.42042 3.71608 4.23200 4.39285 4.45674 4.60476 4.73637 4.79447 4.86568 4.97556 5.02353 5.09533 5.24710 5.31044 5.36069 5.42719 5.48723 5.51101 5.56522 5.57921 5.60486 5.61667 5.70857 5.81294 5.87104 5.97524 6.05071 6.14079 6.17025 6.20017 6.35451 6.39131 6.47085 6.54507 6.63808 6.99275 7.52416 7.74402 7.84402 7.98633 8.09509 8.44118 9.05193 9.61404 11.11490 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.003165 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.584613 B = 8845.996215 C = 9345.477763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.687 5.687 12 C 0.087 3.913 13 H 0.071 0.929 14 C -0.150 4.150 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.076 4.076 18 H 0.071 0.929 19 C -0.114 4.114 20 H 0.085 0.915 21 C -0.152 4.152 22 C 0.046 3.954 23 O -0.383 6.383 24 C 0.051 3.949 25 C -0.099 4.099 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.024 0.976 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.335 0.665 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -21.547 1.129 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.316 5.316 12 C -0.023 4.023 13 H 0.089 0.911 14 C -0.189 4.189 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.095 4.095 18 H 0.089 0.911 19 C -0.132 4.132 20 H 0.103 0.897 21 C -0.190 4.190 22 C -0.031 4.031 23 O -0.302 6.302 24 C -0.026 4.026 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.265 -21.638 1.848 22.346 hybrid contribution 0.755 1.321 -0.975 1.807 sum 6.020 -20.317 0.874 21.208 Atomic orbital electron populations 1.69983 1.06029 1.26458 1.50787 1.25008 0.94842 0.99223 0.95336 0.86541 0.80081 0.83815 0.77586 1.19775 1.21038 1.20965 1.21221 0.92997 0.91047 1.50678 0.92756 1.19074 0.94049 0.90511 0.97644 1.22164 0.96942 0.88587 0.98455 1.60686 1.19371 1.01997 1.49592 1.21549 0.95263 0.91329 0.94176 0.91101 1.22305 0.99596 0.98142 0.98856 1.21458 0.98375 0.94989 1.00423 1.21609 1.00295 0.97598 0.95632 1.21148 0.98439 0.93893 0.96017 0.91053 1.22769 0.98713 0.95423 0.96324 0.89708 1.23019 1.02881 0.98074 0.95024 1.23168 0.98675 0.89331 0.91943 1.88847 1.76849 1.30806 1.33727 1.23646 0.96001 0.92238 0.90695 1.21558 0.97635 0.92795 1.01761 0.93055 0.96878 0.95715 0.92548 0.96708 0.84706 0.92025 0.91981 0.92116 0.92304 0.92263 0.91912 0.90160 0.90280 0.92558 0.90056 0.89173 0.92158 0.92137 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 11 N -0.69 -12.03 6.25 -106.73 -0.67 -12.70 16 12 C 0.09 1.21 2.47 -67.72 -0.17 1.04 16 13 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 14 C -0.15 -1.85 5.17 -26.73 -0.14 -1.99 16 15 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 16 C -0.11 -1.00 5.06 -26.73 -0.14 -1.14 16 17 C -0.08 -0.71 1.61 -90.62 -0.15 -0.85 16 18 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 19 C -0.11 -0.99 2.66 -88.61 -0.24 -1.23 16 20 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 21 C -0.15 -1.33 5.61 -25.20 -0.14 -1.47 16 22 C 0.05 0.40 7.70 37.73 0.29 0.69 16 23 O -0.38 -4.19 11.52 -35.23 -0.41 -4.59 16 24 C 0.05 0.45 6.39 38.21 0.24 0.69 16 25 C -0.10 -1.15 4.58 -26.73 -0.12 -1.28 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 30 H 0.01 0.31 7.44 -51.93 -0.39 -0.08 16 31 H 0.34 5.75 8.47 -39.29 -0.33 5.42 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.45 7.49 -51.93 -0.39 0.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.71 7.50 -51.93 -0.39 0.32 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.87 7.06 -51.93 -0.37 0.51 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -30.26 345.35 -9.96 -40.23 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.52 Total: 0.03 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.29 Total: -18.57 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.07 Total: -39.02 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.41 Total: -4.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.26 -9.96 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.767 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds