Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00698 * 3 2 1 6 6 H 1.48501 * 109.46963 * 60.00430 * 3 2 1 7 7 C 1.37878 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00748 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47063 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47166 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00087 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47271 * 35.00061 * 12 11 10 14 14 C 1.52997 * 109.46908 * 274.99791 * 12 11 10 15 15 C 1.53006 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 59.99836 * 15 14 12 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 20 20 H 1.09007 * 110.80097 * 303.62347 * 19 17 16 21 21 C 1.54815 * 110.90768 * 179.97438 * 19 17 16 22 22 C 1.54101 * 104.18457 * 220.91649 * 21 19 17 23 23 O 1.43737 * 107.29415 * 357.97030 * 22 21 19 24 24 C 1.44377 * 106.98046 * 26.51073 * 23 22 21 25 25 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 26 26 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47589 * 60.00025 * 9 7 2 28 28 H 1.09006 * 109.46658 * 299.99870 * 9 7 2 29 29 H 1.09001 * 109.47015 * 59.99990 * 10 9 7 30 30 H 1.08996 * 109.47273 * 299.99872 * 10 9 7 31 31 H 1.00898 * 110.99683 * 56.03844 * 11 10 9 32 32 H 1.09001 * 109.47375 * 300.00206 * 14 12 11 33 33 H 1.09000 * 109.47140 * 60.00224 * 14 12 11 34 34 H 1.08998 * 109.46505 * 299.99708 * 15 14 12 35 35 H 1.08996 * 109.46884 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 1.09003 * 110.48528 * 339.59316 * 21 19 17 39 39 H 1.08995 * 110.48692 * 102.23860 * 21 19 17 40 40 H 1.09003 * 109.87762 * 117.39542 * 22 21 19 41 41 H 1.09000 * 109.87839 * 238.39084 * 22 21 19 42 42 H 1.08994 * 110.62009 * 201.43396 * 24 23 22 43 43 H 1.09006 * 110.61235 * 78.43836 * 24 23 22 44 44 H 1.08992 * 109.47554 * 59.99639 * 25 17 16 45 45 H 1.09004 * 109.47108 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9343 0.0001 12 6 2.4354 -6.0759 -0.0005 13 1 3.3187 -5.8285 0.5883 14 6 2.8529 -6.3932 -1.4378 15 6 3.8153 -7.5827 -1.4385 16 6 3.1202 -8.8015 -0.8285 17 6 2.7026 -8.4841 0.6088 18 1 3.5860 -8.2371 1.1977 19 6 2.0081 -9.7032 1.2190 20 1 1.1571 -10.0089 0.6103 21 6 1.5713 -9.4181 2.6767 22 6 1.9006 -10.7207 3.4312 23 8 2.4207 -11.6525 2.4683 24 6 3.0064 -10.8745 1.4024 25 6 1.7402 -7.2948 0.6095 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 0.8741 -4.9845 -0.7810 32 1 1.9696 -6.6406 -2.0266 33 1 3.3477 -5.5247 -1.8725 34 1 4.6986 -7.3355 -0.8497 35 1 4.1131 -7.8084 -2.4625 36 1 3.8060 -9.6487 -0.8286 37 1 2.2369 -9.0485 -1.4174 38 1 2.1395 -8.5842 3.0890 39 1 0.5020 -9.2113 2.7210 40 1 2.6488 -10.5251 4.1993 41 1 0.9966 -11.1227 3.8886 42 1 3.0765 -11.4657 0.4894 43 1 3.9876 -10.5003 1.6949 44 1 0.8569 -7.5417 0.0206 45 1 1.4424 -7.0690 1.6334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341361084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = -104.426190 kcal Electronic energy + Delta-G solvation = -20699.288708 eV Core-core repulsion = 17713.889863 eV Total energy + Delta-G solvation = -2985.398845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93066 -39.40165 -36.80547 -35.03953 -33.79915 -31.98740 -30.89241 -29.66107 -28.49724 -25.94137 -24.03067 -23.63568 -22.53398 -22.17023 -21.11696 -20.70279 -18.52408 -17.38050 -17.17671 -16.57597 -16.27450 -16.12263 -15.75326 -15.56868 -14.99429 -14.86375 -14.34692 -14.27958 -14.12722 -13.87821 -13.54707 -13.37026 -13.12188 -12.88346 -12.69401 -12.43278 -12.28283 -12.15413 -12.13282 -11.96648 -11.79057 -11.56949 -11.52242 -11.36071 -11.30781 -10.99695 -10.85486 -10.59040 -10.57801 -9.18039 -8.21557 -6.33149 1.39441 1.39891 1.53273 2.39501 3.03831 3.11806 3.25350 3.64048 3.71054 3.90331 3.94991 4.06741 4.14624 4.20151 4.34936 4.37295 4.43378 4.53762 4.58426 4.61521 4.64871 4.68677 4.77799 4.78181 4.86268 4.90323 4.92436 5.06358 5.07703 5.12345 5.13341 5.21006 5.27875 5.33364 5.34729 5.44990 5.50605 5.58691 5.68035 5.79319 5.95286 6.15767 6.32317 6.57826 6.84477 7.36277 8.90798 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.003165 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.584613 B = 8845.996215 C = 9345.477763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.694 5.694 12 C 0.087 3.913 13 H 0.064 0.936 14 C -0.145 4.145 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.066 4.066 18 H 0.072 0.928 19 C -0.108 4.108 20 H 0.084 0.916 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.405 6.405 24 C 0.050 3.950 25 C -0.092 4.092 26 H 0.264 0.736 27 H -0.010 1.010 28 H -0.007 1.007 29 H 0.053 0.947 30 H 0.017 0.983 31 H 0.337 0.663 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -22.371 0.850 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.323 5.323 12 C -0.023 4.023 13 H 0.082 0.918 14 C -0.185 4.185 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.085 4.085 18 H 0.091 0.909 19 C -0.127 4.127 20 H 0.103 0.897 21 C -0.190 4.190 22 C -0.034 4.034 23 O -0.325 6.325 24 C -0.026 4.026 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.009 0.991 28 H 0.012 0.988 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.700 -22.486 1.569 23.516 hybrid contribution 0.266 1.550 -0.874 1.799 sum 6.966 -20.937 0.695 22.076 Atomic orbital electron populations 1.70115 1.07827 1.27753 1.51475 1.25987 0.95785 1.03409 0.94619 0.85368 0.79030 0.78600 0.77848 1.18566 1.20268 1.20294 1.21643 0.93489 0.92301 1.50830 0.92251 1.18925 0.94315 0.92391 0.94936 1.21751 0.95497 0.88597 0.98361 1.60621 1.20052 1.01750 1.49900 1.21641 0.94495 0.90643 0.95486 0.91798 1.22227 1.00196 0.98714 0.97318 1.21438 0.97743 0.94241 1.01400 1.21598 1.00748 0.97607 0.94786 1.21048 0.97751 0.92976 0.96773 0.90948 1.22694 0.98723 0.95122 0.96138 0.89724 1.23017 1.02860 0.98001 0.95160 1.23260 0.99211 0.89065 0.91827 1.88824 1.77187 1.31953 1.34519 1.23749 0.95979 0.92106 0.90785 1.21473 0.98017 0.92693 1.00808 0.92721 0.99140 0.98844 0.92806 0.96476 0.84564 0.91831 0.93707 0.91981 0.91118 0.90274 0.91654 0.90405 0.90304 0.91960 0.89320 0.87919 0.91554 0.92212 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.09 3.71 5.42 86.30 0.47 4.18 16 11 N -0.69 -24.59 6.25 -491.57 -3.07 -27.66 16 12 C 0.09 2.36 2.47 44.92 0.11 2.47 16 13 H 0.06 1.83 7.80 -2.39 -0.02 1.81 16 14 C -0.15 -3.44 5.17 30.60 0.16 -3.29 16 15 C -0.11 -1.95 5.92 30.60 0.18 -1.77 16 16 C -0.11 -1.63 5.06 30.59 0.15 -1.48 16 17 C -0.07 -1.11 1.61 -10.79 -0.02 -1.12 16 18 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 19 C -0.11 -1.69 2.66 -9.49 -0.03 -1.71 16 20 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 21 C -0.15 -2.47 5.61 31.59 0.18 -2.29 16 22 C 0.04 0.70 7.70 72.35 0.56 1.26 16 23 O -0.41 -8.19 11.52 -148.98 -1.72 -9.91 16 24 C 0.05 0.76 6.39 72.66 0.46 1.23 16 25 C -0.09 -2.04 4.58 30.59 0.14 -1.90 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.05 2.31 8.06 -2.39 -0.02 2.29 16 30 H 0.02 0.72 7.44 -2.39 -0.02 0.70 16 31 H 0.34 11.76 8.47 -89.70 -0.76 11.00 16 32 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.04 1.21 7.45 -2.39 -0.02 1.19 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.92 7.49 -2.39 -0.02 0.90 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.29 7.50 -2.39 -0.02 1.28 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.07 0.94 8.01 -2.38 -0.02 0.92 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.46 7.06 -2.38 -0.02 1.45 16 Total: -1.00 -65.16 345.35 0.91 -64.24 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.17 Total: 17.20 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.22 Total: -33.36 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.79 Total: -84.77 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.72 Total: -9.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.16 0.91 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.184 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds