Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48493 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47406 * 300.00303 * 3 2 1 6 6 H 1.48500 * 109.46843 * 60.00316 * 3 2 1 7 7 C 1.37879 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46751 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46764 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47005 * 35.00510 * 12 11 10 14 14 C 1.52998 * 109.47160 * 275.00077 * 12 11 10 15 15 C 1.53000 * 109.47012 * 299.99801 * 14 12 11 16 16 C 1.52994 * 109.47410 * 299.99924 * 15 14 12 17 17 C 1.53007 * 109.47007 * 59.99923 * 16 15 14 18 18 H 1.09002 * 109.46474 * 60.00286 * 17 16 15 19 19 C 1.53002 * 109.46926 * 179.97438 * 17 16 15 20 20 H 1.08996 * 110.45529 * 59.30755 * 19 17 16 21 21 C 1.54509 * 110.50658 * 181.90626 * 19 17 16 22 22 C 1.54479 * 104.06512 * 118.64997 * 21 19 17 23 23 O 1.44434 * 104.80194 * 23.97352 * 22 21 19 24 24 C 1.44642 * 105.36557 * 319.56984 * 23 22 21 25 25 C 1.52992 * 109.47232 * 300.00065 * 17 16 15 26 26 H 0.96999 * 119.99593 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47021 * 60.00660 * 9 7 2 28 28 H 1.08997 * 109.47467 * 300.00068 * 9 7 2 29 29 H 1.08995 * 109.47210 * 60.00108 * 10 9 7 30 30 H 1.08997 * 109.46954 * 300.00093 * 10 9 7 31 31 H 1.00902 * 111.00533 * 56.04323 * 11 10 9 32 32 H 1.09001 * 109.47093 * 60.00016 * 14 12 11 33 33 H 1.09002 * 109.47121 * 179.97438 * 14 12 11 34 34 H 1.09002 * 109.47176 * 60.00036 * 15 14 12 35 35 H 1.09007 * 109.47050 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47548 * 179.97438 * 16 15 14 37 37 H 1.09002 * 109.47517 * 299.99953 * 16 15 14 38 38 H 1.09007 * 110.51101 * 237.28940 * 21 19 17 39 39 H 1.08997 * 110.51351 * 359.97438 * 21 19 17 40 40 H 1.08993 * 110.37326 * 142.80560 * 22 21 19 41 41 H 1.08998 * 110.37028 * 265.14907 * 22 21 19 42 42 H 1.09003 * 110.34412 * 281.58767 * 24 23 22 43 43 H 1.08999 * 110.50610 * 159.18431 * 24 23 22 44 44 H 1.09002 * 109.47274 * 300.00009 * 25 17 16 45 45 H 1.08997 * 109.47063 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 1 3.3182 -5.8288 0.5878 14 6 2.8540 -6.3924 -1.4389 15 6 1.6147 -6.7393 -2.2664 16 6 0.9197 -7.9586 -1.6575 17 6 0.5011 -7.6421 -0.2202 18 1 -0.1849 -6.7951 -0.2199 19 6 -0.1945 -8.8614 0.3886 20 1 0.4736 -9.7225 0.3847 21 6 -0.6703 -8.5517 1.8256 22 6 -2.2044 -8.7199 1.7576 23 8 -2.4292 -9.6067 0.6399 24 6 -1.4956 -9.1822 -0.3800 25 6 1.7403 -7.2953 0.6073 26 1 -0.4849 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6043 -0.8905 31 1 0.8746 -4.9841 -0.7827 32 1 3.3491 -5.5237 -1.8728 33 1 3.5403 -7.2392 -1.4394 34 1 0.9287 -5.8922 -2.2660 35 1 1.9130 -6.9652 -3.2903 36 1 0.0365 -8.2055 -2.2467 37 1 1.6056 -8.8058 -1.6579 38 1 -0.2393 -9.2613 2.5319 39 1 -0.4095 -7.5302 2.1024 40 1 -2.5782 -9.1676 2.6784 41 1 -2.6841 -7.7573 1.5806 42 1 -1.8668 -8.2911 -0.8863 43 1 -1.3241 -9.9839 -1.0982 44 1 2.4263 -8.1424 0.6068 45 1 1.4420 -7.0694 1.6310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341361141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = -98.718514 kcal Electronic energy + Delta-G solvation = -21189.687890 eV Core-core repulsion = 18204.536549 eV Total energy + Delta-G solvation = -2985.151341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06319 -39.50821 -36.49568 -34.94776 -33.66362 -31.93039 -30.78597 -29.69865 -28.64821 -25.95690 -24.19916 -23.72300 -22.77168 -22.31436 -20.96410 -19.93448 -18.45262 -17.38579 -17.22510 -16.58982 -16.36420 -16.27166 -15.68988 -15.57743 -15.13337 -14.83716 -14.31416 -14.19775 -14.08558 -13.69701 -13.43393 -13.17336 -12.97060 -12.90868 -12.81817 -12.54478 -12.37677 -12.25945 -12.09625 -12.01636 -11.79564 -11.60613 -11.40856 -11.25962 -11.09799 -10.90611 -10.82282 -10.63994 -10.57370 -9.15409 -8.21317 -6.32791 1.39387 1.39746 1.53098 2.39694 3.08984 3.12183 3.44078 3.61700 3.70880 3.86797 3.99390 4.03232 4.18415 4.25363 4.36339 4.46281 4.47213 4.54459 4.57839 4.61502 4.69461 4.70947 4.80397 4.84316 4.88290 4.90629 4.95370 5.03684 5.07758 5.11051 5.13442 5.19693 5.32042 5.32693 5.41328 5.45400 5.54361 5.64820 5.68854 5.80396 5.89349 6.17016 6.35619 6.62098 6.85032 7.36730 8.91026 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.003912 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.455322 B = 7155.352670 C = 7794.911344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.085 3.915 11 N -0.688 5.688 12 C 0.081 3.919 13 H 0.066 0.934 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.107 4.107 17 C -0.072 4.072 18 H 0.057 0.943 19 C -0.106 4.106 20 H 0.093 0.907 21 C -0.151 4.151 22 C 0.039 3.961 23 O -0.402 6.402 24 C 0.045 3.955 25 C -0.092 4.092 26 H 0.264 0.736 27 H -0.012 1.012 28 H -0.007 1.007 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.336 0.664 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -20.730 -1.019 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.320 5.320 12 C -0.029 4.029 13 H 0.085 0.915 14 C -0.183 4.183 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.091 4.091 18 H 0.076 0.924 19 C -0.124 4.124 20 H 0.112 0.888 21 C -0.189 4.189 22 C -0.037 4.037 23 O -0.322 6.322 24 C -0.031 4.031 25 C -0.130 4.130 26 H 0.072 0.928 27 H 0.006 0.994 28 H 0.011 0.989 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.156 0.844 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.750 -20.804 -0.343 20.880 hybrid contribution 0.518 1.585 -0.869 1.881 sum 2.268 -19.218 -1.212 19.390 Atomic orbital electron populations 1.70119 1.07826 1.27714 1.51528 1.25969 0.95747 1.03340 0.94605 0.85381 0.79039 0.78676 0.77836 1.18590 1.20301 1.20299 1.21645 0.93479 0.92323 1.50779 0.92280 1.18907 0.94293 0.92443 0.94792 1.21758 0.95508 0.88830 0.98289 1.60713 1.19883 1.01438 1.50011 1.21657 0.94593 0.91136 0.95476 0.91538 1.22127 0.98476 1.01459 0.96234 1.21513 0.96706 0.98214 0.99403 1.21576 1.00495 0.97565 0.94840 1.21083 0.96695 0.96333 0.94960 0.92415 1.22505 0.96976 0.98705 0.94241 0.88832 1.23035 0.95295 1.03081 0.97469 1.23527 0.95948 0.93901 0.90369 1.89092 1.60356 1.55956 1.26769 1.23672 0.87798 1.00338 0.91281 1.21534 0.96626 0.95924 0.98868 0.92755 0.99388 0.98858 0.92739 0.96704 0.84363 0.93833 0.89818 0.93781 0.90921 0.91310 0.90412 0.89798 0.90537 0.88093 0.92898 0.92656 0.87833 0.90249 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.79 5.23 29.85 0.16 1.95 16 10 C 0.09 3.63 5.42 86.31 0.47 4.10 16 11 N -0.69 -23.98 5.77 -491.55 -2.83 -26.81 16 12 C 0.08 2.16 2.86 44.92 0.13 2.29 16 13 H 0.07 1.85 7.80 -2.39 -0.02 1.83 16 14 C -0.14 -3.33 5.52 30.59 0.17 -3.16 16 15 C -0.12 -2.58 5.67 30.59 0.17 -2.40 16 16 C -0.11 -1.87 5.02 30.59 0.15 -1.72 16 17 C -0.07 -1.44 1.25 -10.79 -0.01 -1.45 16 18 H 0.06 1.47 7.19 -2.39 -0.02 1.45 16 19 C -0.11 -1.86 2.68 -9.78 -0.03 -1.89 16 20 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.15 -2.82 6.20 31.61 0.20 -2.63 16 22 C 0.04 0.79 7.64 72.48 0.55 1.34 16 23 O -0.40 -9.49 11.65 -148.98 -1.74 -11.22 16 24 C 0.05 0.87 6.21 72.48 0.45 1.32 16 25 C -0.09 -1.96 4.69 30.59 0.14 -1.81 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.05 2.33 8.06 -2.39 -0.02 2.31 16 30 H 0.01 0.62 7.43 -2.39 -0.02 0.61 16 31 H 0.34 11.75 5.56 -89.69 -0.50 11.25 16 32 H 0.04 1.16 7.45 -2.39 -0.02 1.15 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.13 6.26 -2.39 -0.01 1.12 16 35 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.07 1.10 7.33 -2.39 -0.02 1.09 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.62 6.57 -2.39 -0.02 1.60 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.12 7.79 -2.39 -0.02 1.10 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.42 6.64 -2.39 -0.02 1.41 16 Total: -1.00 -65.14 338.20 1.43 -63.71 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.44 Total: 19.60 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.25 Total: -34.77 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.55 Total: -83.95 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.74 Total: -11.22 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.14 1.43 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.004 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds