Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47393 * 300.00105 * 3 2 1 6 6 H 1.48504 * 109.46795 * 60.00413 * 3 2 1 7 7 C 1.37878 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47040 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47303 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00313 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46828 * 35.00794 * 12 11 10 14 14 C 1.52997 * 109.47515 * 275.00230 * 12 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 12 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 14 18 18 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 19 19 C 1.52996 * 109.46891 * 179.97438 * 17 16 15 20 20 H 1.08998 * 110.46160 * 297.39419 * 19 17 16 21 21 C 1.54509 * 110.51438 * 60.00508 * 19 17 16 22 22 C 1.54472 * 104.06535 * 118.63927 * 21 19 17 23 23 O 1.44425 * 104.80336 * 23.98368 * 22 21 19 24 24 C 1.44421 * 105.27112 * 319.48288 * 23 22 21 25 25 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 26 26 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46830 * 60.00300 * 9 7 2 28 28 H 1.09003 * 109.47343 * 300.00434 * 9 7 2 29 29 H 1.09003 * 109.47574 * 60.00150 * 10 9 7 30 30 H 1.09003 * 109.46991 * 300.00141 * 10 9 7 31 31 H 1.00902 * 111.00123 * 303.95703 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 33 33 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 34 34 H 1.09004 * 109.46724 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 36 36 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 37 37 H 1.09004 * 109.47108 * 179.97438 * 16 15 14 38 38 H 1.08999 * 110.51507 * 237.29169 * 21 19 17 39 39 H 1.09008 * 110.50473 * 359.97438 * 21 19 17 40 40 H 1.09004 * 110.37136 * 142.81040 * 22 21 19 41 41 H 1.08996 * 110.37722 * 265.14479 * 22 21 19 42 42 H 1.08996 * 110.37438 * 281.68054 * 24 23 22 43 43 H 1.09010 * 110.37068 * 159.34489 * 24 23 22 44 44 H 1.09001 * 109.47375 * 59.99908 * 25 17 16 45 45 H 1.09000 * 109.47140 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0759 -0.0018 13 1 3.3178 -5.8288 0.5879 14 6 2.8537 -6.3924 -1.4389 15 6 3.8160 -7.5819 -1.4395 16 6 3.1203 -8.8011 -0.8307 17 6 2.7017 -8.4845 0.6064 18 1 3.5847 -8.2379 1.1961 19 6 2.0055 -9.7034 1.2150 20 1 1.0941 -9.9360 0.6643 21 6 2.9569 -10.9209 1.2262 22 6 3.1056 -11.2673 2.7242 23 8 1.9159 -10.7345 3.3460 24 6 1.6920 -9.4585 2.7077 25 6 1.7394 -7.2951 0.6071 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8895 30 1 2.8718 -3.6043 -0.8905 31 1 0.8739 -4.9846 0.7800 32 1 3.3489 -5.5237 -1.8728 33 1 1.9708 -6.6395 -2.0285 34 1 4.1146 -7.8071 -2.4634 35 1 4.6989 -7.3353 -0.8498 36 1 2.2375 -9.0477 -1.4203 37 1 3.8058 -9.6486 -0.8316 38 1 2.5148 -11.7561 0.6830 39 1 3.9231 -10.6544 0.7977 40 1 3.1537 -12.3477 2.8608 41 1 3.9951 -10.7919 3.1372 42 1 2.3647 -8.7056 3.1182 43 1 0.6541 -9.1492 2.8316 44 1 0.8565 -7.5418 0.0174 45 1 1.4408 -7.0699 1.6309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341361143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -84.111949 kcal Electronic energy + Delta-G solvation = -20731.133457 eV Core-core repulsion = 17746.615504 eV Total energy + Delta-G solvation = -2984.517953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21212 -38.37093 -35.39535 -33.30717 -32.56757 -30.80951 -29.96644 -28.19771 -27.49092 -24.07030 -23.61087 -22.39450 -21.72281 -20.52914 -19.90240 -19.70897 -16.63723 -16.44588 -16.12418 -15.61775 -15.13580 -14.80884 -14.54767 -14.26968 -14.19127 -13.72835 -13.46783 -12.90641 -12.83554 -12.58433 -12.46002 -12.02622 -11.78164 -11.50094 -11.43752 -11.21091 -11.11410 -10.97470 -10.93345 -10.79100 -10.58974 -10.51938 -10.27155 -10.06112 -9.91483 -9.87072 -9.31795 -9.10307 -8.34891 -7.78320 -5.99146 -4.01558 3.31364 3.38656 3.42720 3.73916 4.22531 4.33521 4.45217 4.58791 4.63376 4.75391 4.87971 5.01707 5.04918 5.05964 5.24076 5.35500 5.36865 5.43141 5.43647 5.47926 5.52226 5.53874 5.57495 5.62643 5.71032 5.72744 5.86212 5.94422 6.09628 6.13398 6.23697 6.26915 6.35581 6.40720 6.43905 6.55952 6.59786 7.01589 7.53563 7.75237 7.85306 7.99827 8.10619 8.45086 9.06061 9.62223 11.12330 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.003189 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.454439 B = 8779.192377 C = 9251.193143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.689 5.689 12 C 0.088 3.912 13 H 0.036 0.964 14 C -0.107 4.107 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.075 4.075 18 H 0.070 0.930 19 C -0.115 4.115 20 H 0.084 0.916 21 C -0.152 4.152 22 C 0.043 3.957 23 O -0.379 6.379 24 C 0.048 3.952 25 C -0.116 4.116 26 H 0.260 0.740 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.057 0.943 31 H 0.335 0.665 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -22.739 1.489 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.320 5.320 12 C -0.022 4.022 13 H 0.054 0.946 14 C -0.145 4.145 15 C -0.157 4.157 16 C -0.150 4.150 17 C -0.094 4.094 18 H 0.088 0.912 19 C -0.134 4.134 20 H 0.102 0.898 21 C -0.190 4.190 22 C -0.034 4.034 23 O -0.298 6.298 24 C -0.029 4.029 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.231 -22.712 0.978 23.571 hybrid contribution 0.898 1.169 0.734 1.647 sum 7.129 -21.542 1.711 22.756 Atomic orbital electron populations 1.69986 1.06026 1.26450 1.50792 1.25008 0.94843 0.99219 0.95341 0.86540 0.80080 0.83815 0.77582 1.19779 1.20966 1.21036 1.21222 0.92998 0.91053 1.50670 0.92764 1.19070 0.94037 0.90486 0.97654 1.22181 0.96894 0.88581 0.98449 1.60595 1.19729 1.01966 1.49684 1.21460 0.94360 0.90580 0.95801 0.94639 1.21520 0.99007 0.97166 0.96817 1.21542 0.98485 0.95232 1.00447 1.21623 1.00408 0.97685 0.95300 1.21168 0.98145 0.93553 0.96502 0.91168 1.22592 0.99232 0.94937 0.96640 0.89770 1.23054 1.00636 0.98218 0.97095 1.23413 0.88601 0.99533 0.91818 1.89119 1.44832 1.33997 1.61840 1.23552 1.02093 0.86228 0.91013 1.21790 0.98692 0.94170 1.00718 0.93059 0.95683 0.96881 0.96848 0.92443 0.84671 0.91960 0.91465 0.92067 0.92364 0.91828 0.92154 0.90791 0.90101 0.89389 0.92422 0.92041 0.88996 0.90985 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.43 5.42 -3.83 -0.02 1.41 16 11 N -0.69 -12.21 6.31 -106.73 -0.67 -12.88 16 12 C 0.09 1.25 2.49 -67.71 -0.17 1.08 16 13 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16 14 C -0.11 -1.42 5.43 -26.73 -0.15 -1.57 16 15 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 16 C -0.11 -1.01 4.95 -26.73 -0.13 -1.14 16 17 C -0.07 -0.69 1.52 -90.62 -0.14 -0.83 16 18 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 19 C -0.12 -0.99 2.68 -89.05 -0.24 -1.22 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.15 -1.13 6.20 -25.17 -0.16 -1.29 16 22 C 0.04 0.35 7.63 37.93 0.29 0.64 16 23 O -0.38 -4.21 11.65 -35.23 -0.41 -4.62 16 24 C 0.05 0.46 6.26 37.93 0.24 0.70 16 25 C -0.12 -1.31 4.31 -26.73 -0.12 -1.42 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 30 H 0.06 1.23 7.43 -51.93 -0.39 0.85 16 31 H 0.34 5.76 8.35 -39.29 -0.33 5.43 16 32 H 0.06 0.92 7.45 -51.93 -0.39 0.54 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.46 6.52 -51.93 -0.34 0.13 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.54 6.44 -51.92 -0.33 0.21 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 43 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.67 7.43 -51.93 -0.39 0.28 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -30.61 343.86 -9.91 -40.52 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.42 Total: -0.37 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.30 Total: -18.22 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.06 Total: -39.29 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.41 Total: -4.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.61 -9.91 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.590 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds