Wall clock time and date at job start Mon Mar 30 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47393 * 300.00105 * 3 2 1 6 6 H 1.48504 * 109.46795 * 60.00413 * 3 2 1 7 7 C 1.37878 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47040 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47303 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00313 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46828 * 35.00794 * 12 11 10 14 14 C 1.52997 * 109.47515 * 275.00230 * 12 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 12 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 14 18 18 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 19 19 C 1.52996 * 109.46891 * 179.97438 * 17 16 15 20 20 H 1.08998 * 110.46160 * 297.39419 * 19 17 16 21 21 C 1.54509 * 110.51438 * 60.00508 * 19 17 16 22 22 C 1.54472 * 104.06535 * 118.63927 * 21 19 17 23 23 O 1.44425 * 104.80336 * 23.98368 * 22 21 19 24 24 C 1.44421 * 105.27112 * 319.48288 * 23 22 21 25 25 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 26 26 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46830 * 60.00300 * 9 7 2 28 28 H 1.09003 * 109.47343 * 300.00434 * 9 7 2 29 29 H 1.09003 * 109.47574 * 60.00150 * 10 9 7 30 30 H 1.09003 * 109.46991 * 300.00141 * 10 9 7 31 31 H 1.00902 * 111.00123 * 303.95703 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 33 33 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 34 34 H 1.09004 * 109.46724 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 36 36 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 37 37 H 1.09004 * 109.47108 * 179.97438 * 16 15 14 38 38 H 1.08999 * 110.51507 * 237.29169 * 21 19 17 39 39 H 1.09008 * 110.50473 * 359.97438 * 21 19 17 40 40 H 1.09004 * 110.37136 * 142.81040 * 22 21 19 41 41 H 1.08996 * 110.37722 * 265.14479 * 22 21 19 42 42 H 1.08996 * 110.37438 * 281.68054 * 24 23 22 43 43 H 1.09010 * 110.37068 * 159.34489 * 24 23 22 44 44 H 1.09001 * 109.47375 * 59.99908 * 25 17 16 45 45 H 1.09000 * 109.47140 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0759 -0.0018 13 1 3.3178 -5.8288 0.5879 14 6 2.8537 -6.3924 -1.4389 15 6 3.8160 -7.5819 -1.4395 16 6 3.1203 -8.8011 -0.8307 17 6 2.7017 -8.4845 0.6064 18 1 3.5847 -8.2379 1.1961 19 6 2.0055 -9.7034 1.2150 20 1 1.0941 -9.9360 0.6643 21 6 2.9569 -10.9209 1.2262 22 6 3.1056 -11.2673 2.7242 23 8 1.9159 -10.7345 3.3460 24 6 1.6920 -9.4585 2.7077 25 6 1.7394 -7.2951 0.6071 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8895 30 1 2.8718 -3.6043 -0.8905 31 1 0.8739 -4.9846 0.7800 32 1 3.3489 -5.5237 -1.8728 33 1 1.9708 -6.6395 -2.0285 34 1 4.1146 -7.8071 -2.4634 35 1 4.6989 -7.3353 -0.8498 36 1 2.2375 -9.0477 -1.4203 37 1 3.8058 -9.6486 -0.8316 38 1 2.5148 -11.7561 0.6830 39 1 3.9231 -10.6544 0.7977 40 1 3.1537 -12.3477 2.8608 41 1 3.9951 -10.7919 3.1372 42 1 2.3647 -8.7056 3.1182 43 1 0.6541 -9.1492 2.8316 44 1 0.8565 -7.5418 0.0174 45 1 1.4408 -7.0699 1.6309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341361143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:33 Heat of formation + Delta-G solvation = -103.048346 kcal Electronic energy + Delta-G solvation = -20731.954600 eV Core-core repulsion = 17746.615504 eV Total energy + Delta-G solvation = -2985.339097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98916 -39.33647 -36.81769 -35.03735 -33.77119 -32.05987 -31.05412 -29.07955 -28.90667 -25.96028 -24.41944 -23.32318 -22.63211 -22.26168 -20.78809 -20.65756 -18.51918 -17.32787 -17.11672 -16.62506 -16.36409 -16.32279 -15.71491 -15.61688 -15.13150 -14.89100 -14.59881 -14.21089 -14.13994 -13.58353 -13.50369 -13.33548 -13.06774 -12.92211 -12.57647 -12.46923 -12.39218 -12.20840 -12.12288 -11.92946 -11.75791 -11.56540 -11.47722 -11.36327 -11.26500 -10.92512 -10.84539 -10.69498 -10.58422 -9.26994 -8.21873 -6.33555 1.39189 1.39739 1.53127 2.39278 3.06325 3.11437 3.25811 3.58473 3.68037 3.83739 4.00841 4.13249 4.16771 4.23062 4.31458 4.39437 4.47282 4.50904 4.58090 4.59209 4.65238 4.67920 4.71649 4.72102 4.85758 4.87813 4.94852 5.03872 5.07521 5.10561 5.19011 5.19880 5.30332 5.38294 5.38381 5.40756 5.45475 5.59974 5.67174 5.78796 5.88667 6.15200 6.31460 6.57908 6.83925 7.35846 8.90508 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.003189 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.454439 B = 8779.192377 C = 9251.193143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.695 5.695 12 C 0.087 3.913 13 H 0.031 0.969 14 C -0.106 4.106 15 C -0.113 4.113 16 C -0.108 4.108 17 C -0.066 4.066 18 H 0.071 0.929 19 C -0.109 4.109 20 H 0.084 0.916 21 C -0.147 4.147 22 C 0.036 3.964 23 O -0.405 6.405 24 C 0.044 3.956 25 C -0.109 4.109 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.009 1.009 29 H 0.015 0.985 30 H 0.054 0.946 31 H 0.338 0.662 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -23.832 1.349 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.326 5.326 12 C -0.022 4.022 13 H 0.049 0.951 14 C -0.144 4.144 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.085 4.085 18 H 0.090 0.910 19 C -0.128 4.128 20 H 0.102 0.898 21 C -0.184 4.184 22 C -0.040 4.040 23 O -0.324 6.324 24 C -0.033 4.033 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.868 -23.829 0.836 25.109 hybrid contribution 0.349 1.481 0.785 1.712 sum 8.218 -22.348 1.621 23.866 Atomic orbital electron populations 1.70116 1.07828 1.27770 1.51434 1.25991 0.95795 1.03420 0.94590 0.85361 0.79011 0.78563 0.77873 1.18585 1.20256 1.20232 1.21638 0.93475 0.92310 1.50901 0.92291 1.18917 0.94284 0.92339 0.94968 1.21769 0.95476 0.88647 0.98286 1.60535 1.20360 1.01725 1.49988 1.21579 0.93695 0.90215 0.96730 0.95067 1.21511 0.99327 0.97853 0.95741 1.21504 0.97746 0.94351 1.01503 1.21609 1.00798 0.97612 0.94554 1.21087 0.97531 0.92801 0.97087 0.91044 1.22510 0.99533 0.95074 0.95688 0.89761 1.23044 1.00909 0.97776 0.96687 1.23613 0.87831 1.00357 0.92220 1.89094 1.46116 1.34519 1.62683 1.23602 1.02042 0.85911 0.91731 1.21726 0.98865 0.93736 1.00363 0.92703 0.98821 0.99083 0.96727 0.92744 0.84437 0.94069 0.92194 0.90889 0.92073 0.91771 0.89927 0.89870 0.88850 0.88099 0.91921 0.92242 0.89180 0.91267 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C 0.09 3.79 5.42 86.30 0.47 4.26 16 11 N -0.70 -25.06 6.31 -491.58 -3.10 -28.16 16 12 C 0.09 2.43 2.49 44.92 0.11 2.54 16 13 H 0.03 0.91 7.80 -2.39 -0.02 0.89 16 14 C -0.11 -2.76 5.43 30.59 0.17 -2.59 16 15 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 16 C -0.11 -1.63 4.95 30.59 0.15 -1.48 16 17 C -0.07 -1.08 1.52 -10.80 -0.02 -1.10 16 18 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 19 C -0.11 -1.64 2.68 -9.78 -0.03 -1.67 16 20 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.15 -1.75 6.20 31.61 0.20 -1.55 16 22 C 0.04 0.51 7.63 72.48 0.55 1.07 16 23 O -0.40 -8.51 11.65 -148.98 -1.74 -10.25 16 24 C 0.04 0.79 6.26 72.49 0.45 1.24 16 25 C -0.11 -2.35 4.31 30.60 0.13 -2.22 16 26 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 29 H 0.01 0.63 8.06 -2.39 -0.02 0.61 16 30 H 0.05 2.38 7.43 -2.39 -0.02 2.37 16 31 H 0.34 11.83 8.35 -89.69 -0.75 11.09 16 32 H 0.04 1.22 7.45 -2.39 -0.02 1.21 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.93 6.52 -2.38 -0.02 0.92 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.90 6.44 -2.38 -0.02 0.88 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 43 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.31 7.43 -2.39 -0.02 1.29 16 Total: -1.00 -66.37 343.86 0.88 -65.49 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.19 Total: 16.00 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.22 Total: -32.56 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.82 Total: -85.49 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.74 Total: -10.25 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.37 0.88 -65.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.557 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds