Wall clock time and date at job start Mon Mar 30 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00289 * 2 1 4 4 H 1.48497 * 109.47070 * 239.99328 * 3 2 1 5 5 H 1.48499 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47674 * 119.99303 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46767 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46701 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99707 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47547 * 35.00236 * 12 11 10 14 14 C 1.53002 * 109.47385 * 274.99548 * 12 11 10 15 15 C 1.52993 * 109.47358 * 300.00622 * 14 12 11 16 16 C 1.52998 * 109.47243 * 299.99502 * 15 14 12 17 17 C 1.53006 * 109.47029 * 59.99877 * 16 15 14 18 18 H 1.08993 * 109.46946 * 60.00292 * 17 16 15 19 19 C 1.52997 * 109.47258 * 180.02562 * 17 16 15 20 20 H 1.09003 * 111.01967 * 57.23181 * 19 17 16 21 21 C 1.55566 * 111.22545 * 292.92927 * 19 17 16 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 17 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 C 1.53002 * 109.47258 * 155.00003 * 12 11 10 26 26 H 0.97005 * 120.00016 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47145 * 60.00137 * 9 7 2 28 28 H 1.08998 * 109.47246 * 299.99898 * 9 7 2 29 29 H 1.08996 * 109.47498 * 60.00431 * 10 9 7 30 30 H 1.08998 * 109.47332 * 300.00063 * 10 9 7 31 31 H 1.00901 * 111.00109 * 303.95348 * 11 10 9 32 32 H 1.09005 * 109.46652 * 60.00365 * 14 12 11 33 33 H 1.08998 * 109.47335 * 179.97438 * 14 12 11 34 34 H 1.08993 * 109.47288 * 59.99551 * 15 14 12 35 35 H 1.09004 * 109.46878 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.47033 * 300.00607 * 16 15 14 37 37 H 1.08998 * 109.47423 * 180.02562 * 16 15 14 38 38 H 1.09007 * 110.84061 * 89.78331 * 21 19 17 39 39 H 1.09000 * 110.83713 * 326.18176 * 21 19 17 40 40 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 41 41 H 1.09003 * 109.82742 * 140.86392 * 22 21 19 42 42 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 43 43 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 44 44 H 1.09004 * 109.46967 * 300.00388 * 25 12 11 45 45 H 1.08993 * 109.47447 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 2.4350 -6.0759 -0.0007 13 1 3.3179 -5.8289 0.5888 14 6 2.8535 -6.3925 -1.4379 15 6 1.6143 -6.7393 -2.2654 16 6 0.9192 -7.9586 -1.6564 17 6 0.5006 -7.6421 -0.2192 18 1 -0.1853 -6.7951 -0.2187 19 6 -0.1939 -8.8616 0.3901 20 1 0.4542 -9.7375 0.3577 21 6 -1.5537 -9.1440 -0.3109 22 6 -2.3648 -9.8292 0.8098 23 8 -1.7688 -9.4645 2.0602 24 6 -0.6672 -8.5702 1.8364 25 6 1.7400 -7.2953 0.6083 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 0.8738 -4.9845 0.7811 32 1 3.3487 -5.5238 -1.8718 33 1 3.5398 -7.2393 -1.4383 34 1 0.9284 -5.8922 -2.2649 35 1 1.9125 -6.9644 -3.2894 36 1 1.6052 -8.8058 -1.6568 37 1 0.0365 -8.2059 -2.2462 38 1 -1.4206 -9.8153 -1.1594 39 1 -2.0302 -8.2142 -0.6217 40 1 -2.3280 -10.9113 0.6843 41 1 -3.3993 -9.4872 0.7796 42 1 -0.9962 -7.5349 1.9254 43 1 0.1354 -8.7738 2.5453 44 1 1.4417 -7.0698 1.6322 45 1 2.4260 -8.1423 0.6083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341361148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:36 Heat of formation + Delta-G solvation = -82.761384 kcal Electronic energy + Delta-G solvation = -21105.320616 eV Core-core repulsion = 18120.861228 eV Total energy + Delta-G solvation = -2984.459388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.05829 -38.41442 -35.08006 -33.23501 -32.39040 -30.73833 -29.98019 -28.14154 -27.64283 -24.00318 -23.37916 -22.40091 -21.56406 -20.48207 -20.31022 -18.94807 -16.76586 -16.26942 -16.22665 -15.37859 -15.02588 -14.82902 -14.42232 -14.16950 -13.88997 -13.62579 -13.42783 -12.89366 -12.73143 -12.46565 -12.33148 -11.96502 -11.67645 -11.58778 -11.45975 -11.16524 -11.08703 -10.96453 -10.91077 -10.70336 -10.55051 -10.38383 -10.14085 -9.83560 -9.71710 -9.62688 -9.31871 -9.13676 -8.34094 -7.74701 -5.98901 -4.01377 3.33664 3.38104 3.40408 3.76119 4.28697 4.43948 4.52669 4.71320 4.74337 4.92689 4.96429 5.04014 5.13613 5.21854 5.37021 5.40110 5.47563 5.51734 5.57054 5.60982 5.66820 5.70542 5.71025 5.75932 5.82219 5.85407 6.01510 6.04230 6.09926 6.31271 6.38906 6.40834 6.43124 6.46782 6.54114 6.76368 6.86983 7.02145 7.53522 7.75239 7.85189 7.99997 8.10693 8.45281 9.05821 9.62318 11.12431 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003806 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.288815 B = 7354.750342 C = 7946.881565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.682 5.682 12 C 0.085 3.915 13 H 0.037 0.963 14 C -0.104 4.104 15 C -0.111 4.111 16 C -0.106 4.106 17 C -0.069 4.069 18 H 0.087 0.913 19 C -0.117 4.117 20 H 0.081 0.919 21 C -0.151 4.151 22 C 0.050 3.950 23 O -0.389 6.389 24 C 0.054 3.946 25 C -0.115 4.115 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.057 0.943 31 H 0.334 0.666 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -20.301 -1.034 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.313 5.313 12 C -0.025 4.025 13 H 0.054 0.946 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.143 4.143 17 C -0.088 4.088 18 H 0.106 0.894 19 C -0.136 4.136 20 H 0.100 0.900 21 C -0.189 4.189 22 C -0.026 4.026 23 O -0.309 6.309 24 C -0.022 4.022 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.270 -20.258 -1.516 20.317 hybrid contribution 0.912 1.074 0.705 1.576 sum 0.641 -19.184 -0.811 19.212 Atomic orbital electron populations 1.69961 1.06014 1.26662 1.50616 1.24992 0.94830 0.99161 0.95314 0.86663 0.79582 0.83189 0.78578 1.20246 1.21270 1.20314 1.21150 0.92918 0.91111 1.50929 0.92904 1.19044 0.93998 0.90454 0.97571 1.22180 0.96899 0.88673 0.98418 1.60625 1.19525 1.01760 1.49400 1.21467 0.94321 0.90934 0.95820 0.94551 1.21477 0.97207 1.00223 0.95335 1.21387 0.97844 0.98467 0.97178 1.21504 0.99663 0.97958 0.95207 1.21018 0.96800 0.96295 0.94653 0.89426 1.22993 0.96419 0.99461 0.94705 0.90014 1.23229 0.95480 1.01743 0.98402 1.23103 0.97027 0.99103 0.83379 1.88382 1.47576 1.66003 1.28893 1.23490 0.88548 0.94043 0.96163 1.21782 0.97106 0.97792 0.98567 0.92964 0.95749 0.96942 0.96906 0.92470 0.84812 0.92087 0.92963 0.89974 0.93262 0.92946 0.92454 0.90224 0.90077 0.91699 0.91630 0.91675 0.89994 0.92179 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16 11 N -0.68 -11.43 4.82 -106.72 -0.51 -11.95 16 12 C 0.08 1.17 2.82 -67.71 -0.19 0.98 16 13 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16 14 C -0.10 -1.36 5.53 -26.73 -0.15 -1.51 16 15 C -0.11 -1.39 5.77 -26.74 -0.15 -1.55 16 16 C -0.11 -1.11 5.06 -26.73 -0.14 -1.25 16 17 C -0.07 -0.74 1.54 -90.62 -0.14 -0.87 16 18 H 0.09 1.10 7.45 -51.93 -0.39 0.72 16 19 C -0.12 -1.11 2.61 -88.23 -0.23 -1.35 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.15 -1.34 5.73 -24.64 -0.14 -1.48 16 22 C 0.05 0.48 7.80 37.88 0.30 0.78 16 23 O -0.39 -4.79 11.36 -35.23 -0.40 -5.19 16 24 C 0.05 0.58 6.21 38.18 0.24 0.81 16 25 C -0.11 -1.27 4.38 -26.73 -0.12 -1.39 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 30 H 0.06 1.20 7.43 -51.93 -0.39 0.82 16 31 H 0.33 5.51 8.19 -39.29 -0.32 5.19 16 32 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.23 7.60 -51.93 -0.39 0.84 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 43 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.06 0.66 7.28 -51.93 -0.38 0.28 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -29.87 343.39 -9.82 -39.69 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.49 Total: 0.29 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.30 Total: -18.51 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.22 Total: -38.18 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.40 Total: -5.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.87 -9.82 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.074 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds