Wall clock time and date at job start Mon Mar 30 2020 06:57:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86793 * 120.00289 * 2 1
4 4 H 1.48497 * 109.47070 * 239.99328 * 3 2 1
5 5 H 1.48499 * 109.47283 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47674 * 119.99303 * 3 2 1
7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99764 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00000 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.46767 * 179.97438 * 9 7 2
11 11 N 1.46903 * 109.46701 * 180.02562 * 10 9 7
12 12 C 1.46901 * 110.99707 * 179.97438 * 11 10 9
13 13 H 1.08998 * 109.47547 * 35.00236 * 12 11 10
14 14 C 1.53002 * 109.47385 * 274.99548 * 12 11 10
15 15 C 1.52993 * 109.47358 * 300.00622 * 14 12 11
16 16 C 1.52998 * 109.47243 * 299.99502 * 15 14 12
17 17 C 1.53006 * 109.47029 * 59.99877 * 16 15 14
18 18 H 1.08993 * 109.46946 * 60.00292 * 17 16 15
19 19 C 1.52997 * 109.47258 * 180.02562 * 17 16 15
20 20 H 1.09003 * 111.01967 * 57.23181 * 19 17 16
21 21 C 1.55566 * 111.22545 * 292.92927 * 19 17 16
22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 17
23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19
24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21
25 25 C 1.53002 * 109.47258 * 155.00003 * 12 11 10
26 26 H 0.97005 * 120.00016 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.47145 * 60.00137 * 9 7 2
28 28 H 1.08998 * 109.47246 * 299.99898 * 9 7 2
29 29 H 1.08996 * 109.47498 * 60.00431 * 10 9 7
30 30 H 1.08998 * 109.47332 * 300.00063 * 10 9 7
31 31 H 1.00901 * 111.00109 * 303.95348 * 11 10 9
32 32 H 1.09005 * 109.46652 * 60.00365 * 14 12 11
33 33 H 1.08998 * 109.47335 * 179.97438 * 14 12 11
34 34 H 1.08993 * 109.47288 * 59.99551 * 15 14 12
35 35 H 1.09004 * 109.46878 * 179.97438 * 15 14 12
36 36 H 1.09006 * 109.47033 * 300.00607 * 16 15 14
37 37 H 1.08998 * 109.47423 * 180.02562 * 16 15 14
38 38 H 1.09007 * 110.84061 * 89.78331 * 21 19 17
39 39 H 1.09000 * 110.83713 * 326.18176 * 21 19 17
40 40 H 1.08995 * 109.83335 * 261.84022 * 22 21 19
41 41 H 1.09003 * 109.82742 * 140.86392 * 22 21 19
42 42 H 1.09002 * 110.30923 * 94.49115 * 24 23 22
43 43 H 1.09000 * 110.31166 * 216.56243 * 24 23 22
44 44 H 1.09004 * 109.46967 * 300.00388 * 25 12 11
45 45 H 1.08993 * 109.47447 * 180.02562 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2124
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6965 1.2126
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 7 1.5105 -4.9343 -0.0001
12 6 2.4350 -6.0759 -0.0007
13 1 3.3179 -5.8289 0.5888
14 6 2.8535 -6.3925 -1.4379
15 6 1.6143 -6.7393 -2.2654
16 6 0.9192 -7.9586 -1.6564
17 6 0.5006 -7.6421 -0.2192
18 1 -0.1853 -6.7951 -0.2187
19 6 -0.1939 -8.8616 0.3901
20 1 0.4542 -9.7375 0.3577
21 6 -1.5537 -9.1440 -0.3109
22 6 -2.3648 -9.8292 0.8098
23 8 -1.7688 -9.4645 2.0602
24 6 -0.6672 -8.5702 1.8364
25 6 1.7400 -7.2953 0.6083
26 1 -0.4850 0.8401 -0.0004
27 1 0.6246 -2.5571 -0.8896
28 1 0.6239 -2.5567 0.8903
29 1 2.8717 -3.6044 0.8905
30 1 2.8718 -3.6044 -0.8894
31 1 0.8738 -4.9845 0.7811
32 1 3.3487 -5.5238 -1.8718
33 1 3.5398 -7.2393 -1.4383
34 1 0.9284 -5.8922 -2.2649
35 1 1.9125 -6.9644 -3.2894
36 1 1.6052 -8.8058 -1.6568
37 1 0.0365 -8.2059 -2.2462
38 1 -1.4206 -9.8153 -1.1594
39 1 -2.0302 -8.2142 -0.6217
40 1 -2.3280 -10.9113 0.6843
41 1 -3.3993 -9.4872 0.7796
42 1 -0.9962 -7.5349 1.9254
43 1 0.1354 -8.7738 2.5453
44 1 1.4417 -7.0698 1.6322
45 1 2.4260 -8.1423 0.6083
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000341361148.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:57:36
Heat of formation + Delta-G solvation = -82.761384 kcal
Electronic energy + Delta-G solvation = -21105.320616 eV
Core-core repulsion = 18120.861228 eV
Total energy + Delta-G solvation = -2984.459388 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.05829 -38.41442 -35.08006 -33.23501 -32.39040 -30.73833 -29.98019 -28.14154
-27.64283 -24.00318 -23.37916 -22.40091 -21.56406 -20.48207 -20.31022 -18.94807
-16.76586 -16.26942 -16.22665 -15.37859 -15.02588 -14.82902 -14.42232 -14.16950
-13.88997 -13.62579 -13.42783 -12.89366 -12.73143 -12.46565 -12.33148 -11.96502
-11.67645 -11.58778 -11.45975 -11.16524 -11.08703 -10.96453 -10.91077 -10.70336
-10.55051 -10.38383 -10.14085 -9.83560 -9.71710 -9.62688 -9.31871 -9.13676
-8.34094 -7.74701 -5.98901 -4.01377 3.33664 3.38104 3.40408 3.76119
4.28697 4.43948 4.52669 4.71320 4.74337 4.92689 4.96429 5.04014
5.13613 5.21854 5.37021 5.40110 5.47563 5.51734 5.57054 5.60982
5.66820 5.70542 5.71025 5.75932 5.82219 5.85407 6.01510 6.04230
6.09926 6.31271 6.38906 6.40834 6.43124 6.46782 6.54114 6.76368
6.86983 7.02145 7.53522 7.75239 7.85189 7.99997 8.10693 8.45281
9.05821 9.62318 11.12431
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.024064 B = 0.003806 C = 0.003523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1163.288815 B = 7354.750342 C = 7946.881565
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.058 3.942
3 Si 0.892 3.108
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.522 4.522
8 H 0.053 0.947
9 C 0.027 3.973
10 C 0.067 3.933
11 N -0.682 5.682
12 C 0.085 3.915
13 H 0.037 0.963
14 C -0.104 4.104
15 C -0.111 4.111
16 C -0.106 4.106
17 C -0.069 4.069
18 H 0.087 0.913
19 C -0.117 4.117
20 H 0.081 0.919
21 C -0.151 4.151
22 C 0.050 3.950
23 O -0.389 6.389
24 C 0.054 3.946
25 C -0.115 4.115
26 H 0.261 0.739
27 H 0.024 0.976
28 H 0.012 0.988
29 H 0.013 0.987
30 H 0.057 0.943
31 H 0.334 0.666
32 H 0.060 0.940
33 H 0.052 0.948
34 H 0.082 0.918
35 H 0.049 0.951
36 H 0.052 0.948
37 H 0.057 0.943
38 H 0.079 0.921
39 H 0.081 0.919
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.065 0.935
43 H 0.082 0.918
44 H 0.060 0.940
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.036 -20.301 -1.034 20.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.720 3.280
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.561 4.561
8 H 0.071 0.929
9 C -0.011 4.011
10 C -0.062 4.062
11 N -0.313 5.313
12 C -0.025 4.025
13 H 0.054 0.946
14 C -0.142 4.142
15 C -0.149 4.149
16 C -0.143 4.143
17 C -0.088 4.088
18 H 0.106 0.894
19 C -0.136 4.136
20 H 0.100 0.900
21 C -0.189 4.189
22 C -0.026 4.026
23 O -0.309 6.309
24 C -0.022 4.022
25 C -0.152 4.152
26 H 0.070 0.930
27 H 0.043 0.957
28 H 0.031 0.969
29 H 0.031 0.969
30 H 0.075 0.925
31 H 0.152 0.848
32 H 0.079 0.921
33 H 0.070 0.930
34 H 0.100 0.900
35 H 0.067 0.933
36 H 0.071 0.929
37 H 0.075 0.925
38 H 0.098 0.902
39 H 0.099 0.901
40 H 0.083 0.917
41 H 0.084 0.916
42 H 0.083 0.917
43 H 0.100 0.900
44 H 0.078 0.922
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -0.270 -20.258 -1.516 20.317
hybrid contribution 0.912 1.074 0.705 1.576
sum 0.641 -19.184 -0.811 19.212
Atomic orbital electron populations
1.69961 1.06014 1.26662 1.50616 1.24992 0.94830 0.99161 0.95314
0.86663 0.79582 0.83189 0.78578 1.20246 1.21270 1.20314 1.21150
0.92918 0.91111 1.50929 0.92904 1.19044 0.93998 0.90454 0.97571
1.22180 0.96899 0.88673 0.98418 1.60625 1.19525 1.01760 1.49400
1.21467 0.94321 0.90934 0.95820 0.94551 1.21477 0.97207 1.00223
0.95335 1.21387 0.97844 0.98467 0.97178 1.21504 0.99663 0.97958
0.95207 1.21018 0.96800 0.96295 0.94653 0.89426 1.22993 0.96419
0.99461 0.94705 0.90014 1.23229 0.95480 1.01743 0.98402 1.23103
0.97027 0.99103 0.83379 1.88382 1.47576 1.66003 1.28893 1.23490
0.88548 0.94043 0.96163 1.21782 0.97106 0.97792 0.98567 0.92964
0.95749 0.96942 0.96906 0.92470 0.84812 0.92087 0.92963 0.89974
0.93262 0.92946 0.92454 0.90224 0.90077 0.91699 0.91630 0.91675
0.89994 0.92179 0.91904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16
2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16
3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16
4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16
8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16
9 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16
10 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16
11 N -0.68 -11.43 4.82 -106.72 -0.51 -11.95 16
12 C 0.08 1.17 2.82 -67.71 -0.19 0.98 16
13 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16
14 C -0.10 -1.36 5.53 -26.73 -0.15 -1.51 16
15 C -0.11 -1.39 5.77 -26.74 -0.15 -1.55 16
16 C -0.11 -1.11 5.06 -26.73 -0.14 -1.25 16
17 C -0.07 -0.74 1.54 -90.62 -0.14 -0.87 16
18 H 0.09 1.10 7.45 -51.93 -0.39 0.72 16
19 C -0.12 -1.11 2.61 -88.23 -0.23 -1.35 16
20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
21 C -0.15 -1.34 5.73 -24.64 -0.14 -1.48 16
22 C 0.05 0.48 7.80 37.88 0.30 0.78 16
23 O -0.39 -4.79 11.36 -35.23 -0.40 -5.19 16
24 C 0.05 0.58 6.21 38.18 0.24 0.81 16
25 C -0.11 -1.27 4.38 -26.73 -0.12 -1.39 16
26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16
28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
29 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16
30 H 0.06 1.20 7.43 -51.93 -0.39 0.82 16
31 H 0.33 5.51 8.19 -39.29 -0.32 5.19 16
32 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16
33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.08 1.23 7.60 -51.93 -0.39 0.84 16
35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16
38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
39 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16
40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16
43 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16
44 H 0.06 0.66 7.28 -51.93 -0.38 0.28 16
45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 343.39 15.07 5.17 5.17
Total: -1.00 -29.87 343.39 -9.82 -39.69
By element:
Atomic # 1 Polarization: 8.78 SS G_CDS: -8.49 Total: 0.29 kcal
Atomic # 6 Polarization: -17.21 SS G_CDS: -1.30 Total: -18.51 kcal
Atomic # 7 Polarization: -38.40 SS G_CDS: 0.22 Total: -38.18 kcal
Atomic # 8 Polarization: -4.79 SS G_CDS: -0.40 Total: -5.19 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -29.87 -9.82 -39.69 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000341361148.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.074 kcal
(2) G-P(sol) polarization free energy of solvation -29.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.944 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds