Wall clock time and date at job start Mon Mar 30 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00289 * 2 1 4 4 H 1.48497 * 109.47070 * 239.99328 * 3 2 1 5 5 H 1.48499 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47674 * 119.99303 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46767 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46701 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99707 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47547 * 35.00236 * 12 11 10 14 14 C 1.53002 * 109.47385 * 274.99548 * 12 11 10 15 15 C 1.52993 * 109.47358 * 300.00622 * 14 12 11 16 16 C 1.52998 * 109.47243 * 299.99502 * 15 14 12 17 17 C 1.53006 * 109.47029 * 59.99877 * 16 15 14 18 18 H 1.08993 * 109.46946 * 60.00292 * 17 16 15 19 19 C 1.52997 * 109.47258 * 180.02562 * 17 16 15 20 20 H 1.09003 * 111.01967 * 57.23181 * 19 17 16 21 21 C 1.55566 * 111.22545 * 292.92927 * 19 17 16 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 17 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 C 1.53002 * 109.47258 * 155.00003 * 12 11 10 26 26 H 0.97005 * 120.00016 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47145 * 60.00137 * 9 7 2 28 28 H 1.08998 * 109.47246 * 299.99898 * 9 7 2 29 29 H 1.08996 * 109.47498 * 60.00431 * 10 9 7 30 30 H 1.08998 * 109.47332 * 300.00063 * 10 9 7 31 31 H 1.00901 * 111.00109 * 303.95348 * 11 10 9 32 32 H 1.09005 * 109.46652 * 60.00365 * 14 12 11 33 33 H 1.08998 * 109.47335 * 179.97438 * 14 12 11 34 34 H 1.08993 * 109.47288 * 59.99551 * 15 14 12 35 35 H 1.09004 * 109.46878 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.47033 * 300.00607 * 16 15 14 37 37 H 1.08998 * 109.47423 * 180.02562 * 16 15 14 38 38 H 1.09007 * 110.84061 * 89.78331 * 21 19 17 39 39 H 1.09000 * 110.83713 * 326.18176 * 21 19 17 40 40 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 41 41 H 1.09003 * 109.82742 * 140.86392 * 22 21 19 42 42 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 43 43 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 44 44 H 1.09004 * 109.46967 * 300.00388 * 25 12 11 45 45 H 1.08993 * 109.47447 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 2.4350 -6.0759 -0.0007 13 1 3.3179 -5.8289 0.5888 14 6 2.8535 -6.3925 -1.4379 15 6 1.6143 -6.7393 -2.2654 16 6 0.9192 -7.9586 -1.6564 17 6 0.5006 -7.6421 -0.2192 18 1 -0.1853 -6.7951 -0.2187 19 6 -0.1939 -8.8616 0.3901 20 1 0.4542 -9.7375 0.3577 21 6 -1.5537 -9.1440 -0.3109 22 6 -2.3648 -9.8292 0.8098 23 8 -1.7688 -9.4645 2.0602 24 6 -0.6672 -8.5702 1.8364 25 6 1.7400 -7.2953 0.6083 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 0.8738 -4.9845 0.7811 32 1 3.3487 -5.5238 -1.8718 33 1 3.5398 -7.2393 -1.4383 34 1 0.9284 -5.8922 -2.2649 35 1 1.9125 -6.9644 -3.2894 36 1 1.6052 -8.8058 -1.6568 37 1 0.0365 -8.2059 -2.2462 38 1 -1.4206 -9.8153 -1.1594 39 1 -2.0302 -8.2142 -0.6217 40 1 -2.3280 -10.9113 0.6843 41 1 -3.3993 -9.4872 0.7796 42 1 -0.9962 -7.5349 1.9254 43 1 0.1354 -8.7738 2.5453 44 1 1.4417 -7.0698 1.6322 45 1 2.4260 -8.1423 0.6083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341361148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:36 Heat of formation + Delta-G solvation = -100.360942 kcal Electronic energy + Delta-G solvation = -21106.083790 eV Core-core repulsion = 18120.861228 eV Total energy + Delta-G solvation = -2985.222562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94040 -39.42475 -36.55390 -34.93756 -33.68367 -31.96944 -31.10604 -29.21131 -28.99720 -25.93055 -24.29969 -23.32729 -22.58185 -22.20486 -21.16760 -20.03659 -18.44123 -17.59388 -17.13240 -16.69235 -16.41613 -15.97027 -15.76008 -15.48615 -15.03046 -14.76423 -14.40985 -14.26807 -13.97160 -13.76518 -13.50384 -13.09565 -13.04633 -12.90336 -12.79705 -12.52136 -12.38165 -12.24440 -12.04971 -11.95100 -11.82578 -11.56820 -11.40719 -11.34465 -11.17785 -10.79585 -10.74567 -10.55570 -10.45542 -9.16436 -8.20621 -6.32180 1.39313 1.42483 1.50479 2.40002 2.98010 3.12648 3.39205 3.51654 3.73426 3.85776 4.01520 4.09126 4.20524 4.34058 4.36311 4.44859 4.50706 4.54597 4.58554 4.65209 4.73546 4.75876 4.83797 4.86145 4.88543 4.90522 4.97035 5.05362 5.06658 5.09033 5.17446 5.24306 5.37937 5.44711 5.45695 5.50184 5.56021 5.69401 5.74166 5.82250 6.07661 6.17584 6.35447 6.62132 6.85336 7.37075 8.91169 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003806 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.288815 B = 7354.750342 C = 7946.881565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.035 3.965 10 C 0.087 3.913 11 N -0.682 5.682 12 C 0.082 3.918 13 H 0.033 0.967 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.100 4.100 17 C -0.063 4.063 18 H 0.062 0.938 19 C -0.107 4.107 20 H 0.097 0.903 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.413 6.413 24 C 0.050 3.950 25 C -0.108 4.108 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.335 0.665 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -21.753 -1.276 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.313 5.313 12 C -0.027 4.027 13 H 0.051 0.949 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.137 4.137 17 C -0.082 4.082 18 H 0.080 0.920 19 C -0.125 4.125 20 H 0.115 0.885 21 C -0.185 4.185 22 C -0.032 4.032 23 O -0.333 6.333 24 C -0.026 4.026 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.007 0.993 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.054 -21.731 -1.762 21.828 hybrid contribution 0.456 1.498 0.775 1.747 sum 1.510 -20.233 -0.986 20.314 Atomic orbital electron populations 1.70101 1.07799 1.27832 1.51347 1.25960 0.95754 1.03308 0.94597 0.85498 0.78282 0.78068 0.79176 1.19186 1.20733 1.19164 1.21598 0.93453 0.92420 1.51044 0.92363 1.18882 0.94240 0.92297 0.94838 1.21757 0.95426 0.88856 0.98144 1.60543 1.19921 1.01269 1.49589 1.21595 0.93746 0.90671 0.96715 0.94941 1.21490 0.97764 1.00331 0.94563 1.21342 0.97067 0.98307 0.98031 1.21465 1.00194 0.97383 0.94664 1.20909 0.96166 0.96037 0.95079 0.91954 1.22897 0.96767 0.99155 0.93695 0.88471 1.23220 0.94834 1.01679 0.98760 1.23272 0.97106 1.00141 0.82688 1.88356 1.48176 1.66241 1.30536 1.23540 0.88522 0.93215 0.97347 1.21748 0.97436 0.97043 0.98369 0.92756 0.98865 0.99256 0.96928 0.92835 0.84727 0.94231 0.90391 0.93265 0.92231 0.90946 0.91678 0.88254 0.91093 0.90105 0.91495 0.93058 0.89140 0.92068 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.89 5.23 29.85 0.16 2.04 16 10 C 0.09 3.71 5.42 86.30 0.47 4.17 16 11 N -0.68 -23.39 4.82 -491.56 -2.37 -25.76 16 12 C 0.08 2.19 2.82 44.92 0.13 2.31 16 13 H 0.03 0.91 7.80 -2.39 -0.02 0.89 16 14 C -0.10 -2.57 5.53 30.59 0.17 -2.40 16 15 C -0.11 -2.63 5.77 30.59 0.18 -2.45 16 16 C -0.10 -1.85 5.06 30.60 0.15 -1.69 16 17 C -0.06 -1.25 1.54 -10.79 -0.02 -1.26 16 18 H 0.06 1.57 7.45 -2.39 -0.02 1.55 16 19 C -0.11 -1.79 2.61 -9.25 -0.02 -1.82 16 20 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.15 -2.34 5.73 31.95 0.18 -2.16 16 22 C 0.04 0.78 7.80 72.45 0.56 1.34 16 23 O -0.41 -9.76 11.36 -148.98 -1.69 -11.45 16 24 C 0.05 1.02 6.21 72.65 0.45 1.47 16 25 C -0.11 -2.19 4.38 30.60 0.13 -2.06 16 26 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 30 H 0.05 2.30 7.43 -2.39 -0.02 2.28 16 31 H 0.33 11.40 8.19 -89.69 -0.73 10.67 16 32 H 0.04 1.14 7.45 -2.38 -0.02 1.12 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.50 7.60 -2.39 -0.02 1.48 16 35 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.06 1.13 7.55 -2.39 -0.02 1.11 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.16 8.03 -2.39 -0.02 1.14 16 43 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 44 H 0.06 1.24 7.28 -2.38 -0.02 1.23 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.41 343.39 1.68 -63.73 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.20 Total: 17.33 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.24 Total: -33.41 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.09 Total: -82.92 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.69 Total: -11.45 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.41 1.68 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341361148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.634 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds