Wall clock time and date at job start Mon Mar 30 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 C 1.52992 * 109.47482 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.46966 * 64.99950 * 9 7 6 11 11 O 1.21279 * 119.99998 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99809 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99848 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47303 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47191 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00266 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47410 * 89.99863 * 19 17 15 21 21 H 1.48507 * 109.47123 * 209.99998 * 19 17 15 22 22 H 1.48502 * 109.47140 * 329.99450 * 19 17 15 23 23 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 24 24 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 25 25 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 30 30 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 31 31 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 33 33 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 35 35 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47729 * 184.99759 * 9 7 6 37 37 H 1.09001 * 109.47563 * 305.00337 * 9 7 6 38 38 H 0.97000 * 120.00479 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47198 * 300.00090 * 13 12 10 40 40 H 1.09001 * 109.46592 * 60.00240 * 13 12 10 41 41 H 1.09001 * 109.47096 * 300.00188 * 14 13 12 42 42 H 1.09000 * 109.47278 * 59.99815 * 14 13 12 43 43 H 0.96997 * 120.00293 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 23 7 6 45 45 H 1.09002 * 109.46716 * 60.00091 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2491 6 6 2.0401 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2493 9 6 2.0394 -2.8851 -2.4986 10 6 1.4381 -4.2656 -2.5618 11 8 0.6766 -4.6357 -1.6934 12 7 1.7465 -5.0888 -3.5834 13 6 1.1623 -6.4310 -3.6446 14 6 1.6716 -7.1525 -4.8939 15 6 1.0702 -8.5328 -4.9571 16 1 0.3923 -8.8623 -4.1838 17 6 1.3848 -9.3746 -6.0028 18 7 0.8604 -10.5794 -6.0578 19 14 2.5569 -8.8043 -7.3408 20 1 3.9489 -9.1583 -6.9635 21 1 2.2070 -9.4691 -8.6219 22 1 2.4466 -7.3321 -7.5010 23 6 2.0399 -0.7212 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6768 -0.2075 2.1391 31 1 3.1301 -0.7216 1.2488 32 1 0.4402 -2.1638 1.2491 33 1 1.8939 -2.6778 2.1388 34 1 3.1301 -2.8849 -0.0003 35 1 1.6764 -3.9125 -0.0005 36 1 1.7510 -2.3223 -3.3864 37 1 3.1257 -2.9638 -2.4553 38 1 2.3552 -4.7928 -4.2782 39 1 1.4508 -6.9936 -2.7567 40 1 0.0760 -6.3527 -3.6881 41 1 1.3828 -6.5897 -5.7816 42 1 2.7579 -7.2306 -4.8509 43 1 1.0820 -11.1717 -6.7932 44 1 1.6761 -0.2072 -2.1391 45 1 3.1299 -0.7212 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342640036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:39 Heat of formation + Delta-G solvation = -86.612664 kcal Electronic energy + Delta-G solvation = -20670.966613 eV Core-core repulsion = 17686.340221 eV Total energy + Delta-G solvation = -2984.626392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20062 -38.81846 -35.08016 -33.86245 -32.80805 -32.04121 -30.24071 -27.63055 -27.44863 -26.40556 -24.61175 -22.12902 -21.14696 -20.71059 -19.69282 -18.58089 -16.92888 -16.58328 -15.48292 -15.47686 -15.03717 -14.79803 -14.47680 -14.21445 -13.98941 -13.91073 -13.25495 -13.03853 -12.90492 -12.58940 -12.46661 -12.04701 -11.97975 -11.85326 -11.53217 -11.45552 -11.31030 -11.17205 -11.04997 -10.87665 -10.39999 -10.31932 -10.26279 -10.13678 -10.01075 -9.94428 -9.40000 -9.18574 -8.63823 -8.48329 -6.11418 -4.11482 3.00133 3.24734 3.32350 3.33638 3.65102 4.37295 4.46342 4.50414 4.57564 4.86090 4.95913 5.09377 5.17969 5.21503 5.26044 5.31390 5.38917 5.43689 5.49648 5.54058 5.59215 5.61572 5.66526 5.73133 5.81167 5.88670 5.90142 5.95252 6.12438 6.13320 6.17690 6.22014 6.23643 6.29150 6.50055 6.51847 6.56983 6.81727 7.15142 7.23634 7.66927 7.95697 8.43733 8.63919 8.93137 9.48758 11.01703 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044721 B = 0.003091 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.953661 B = 9056.133883 C = 9339.709001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.139 4.139 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.729 5.729 13 C 0.130 3.870 14 C -0.022 4.022 15 C -0.523 4.523 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.103 4.103 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.395 0.605 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.017 0.983 43 H 0.265 0.735 44 H 0.060 0.940 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 23.952 10.434 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.180 4.180 10 C 0.291 3.709 11 O -0.422 6.422 12 N -0.380 5.380 13 C 0.008 3.992 14 C -0.060 4.060 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.057 23.490 10.946 26.231 hybrid contribution 0.965 0.233 -1.223 1.576 sum 5.023 23.724 9.723 26.126 Atomic orbital electron populations 1.21992 0.94685 1.02452 1.01247 1.20509 0.95765 0.94713 0.95426 1.21870 1.00798 0.95633 1.01522 1.21604 1.00282 0.95806 0.96795 1.21549 1.01144 0.95005 0.97966 1.21707 0.99670 1.00999 0.93349 1.20929 1.01397 0.93314 0.93317 0.90067 1.21771 1.01883 0.93894 1.00409 1.20634 0.81713 0.86920 0.81672 1.90644 1.36324 1.76791 1.38474 1.46381 1.48746 1.16779 1.26056 1.21474 0.97746 0.79809 1.00216 1.19788 0.96532 0.96800 0.92845 1.20931 1.28654 0.96354 1.10199 0.90650 1.25008 0.95835 0.94678 0.97798 1.69900 1.44115 1.07413 1.32280 0.86745 0.81457 0.79315 0.81512 1.20227 1.21272 1.19088 1.21663 1.00409 0.94952 0.97064 0.93055 0.92921 0.91588 0.92834 0.92784 0.92859 0.92435 0.92249 0.91682 0.92404 0.92921 0.89734 0.89290 0.89316 0.77191 0.92098 0.92083 0.96064 0.96497 0.92548 0.92083 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.78 37.16 0.29 -0.97 16 2 C -0.06 -0.53 0.77 -154.51 -0.12 -0.65 16 3 C -0.14 -1.00 8.47 37.16 0.31 -0.69 16 4 C -0.11 -0.92 4.73 -26.73 -0.13 -1.05 16 5 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 6 C -0.12 -1.39 4.95 -26.73 -0.13 -1.53 16 7 C -0.07 -0.77 1.56 -90.63 -0.14 -0.91 16 8 H 0.08 1.01 6.24 -51.93 -0.32 0.69 16 9 C -0.14 -1.53 5.18 -27.88 -0.14 -1.68 16 10 C 0.50 7.91 7.55 -10.98 -0.08 7.82 16 11 O -0.54 -10.48 13.97 5.56 0.08 -10.40 16 12 N -0.73 -11.85 5.56 -60.29 -0.33 -12.18 16 13 C 0.13 2.66 5.61 -4.04 -0.02 2.64 16 14 C -0.02 -0.50 4.16 -27.89 -0.12 -0.62 16 15 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 19 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 23 C -0.10 -0.90 4.01 -26.73 -0.11 -1.00 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.64 4.81 -51.93 -0.25 0.39 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.32 8.47 -40.82 -0.35 4.97 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 42 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -31.27 342.34 -8.22 -39.49 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.26 Total: 1.37 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.97 Total: -13.16 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.44 Total: -38.86 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.27 -8.22 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.125 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds