Wall clock time and date at job start Mon Mar 30 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 C 1.52992 * 109.47482 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.46966 * 64.99950 * 9 7 6 11 11 O 1.21279 * 119.99998 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99809 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99848 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47303 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47191 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00266 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47410 * 89.99863 * 19 17 15 21 21 H 1.48507 * 109.47123 * 209.99998 * 19 17 15 22 22 H 1.48502 * 109.47140 * 329.99450 * 19 17 15 23 23 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 24 24 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 25 25 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 30 30 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 31 31 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 33 33 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 35 35 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47729 * 184.99759 * 9 7 6 37 37 H 1.09001 * 109.47563 * 305.00337 * 9 7 6 38 38 H 0.97000 * 120.00479 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47198 * 300.00090 * 13 12 10 40 40 H 1.09001 * 109.46592 * 60.00240 * 13 12 10 41 41 H 1.09001 * 109.47096 * 300.00188 * 14 13 12 42 42 H 1.09000 * 109.47278 * 59.99815 * 14 13 12 43 43 H 0.96997 * 120.00293 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 23 7 6 45 45 H 1.09002 * 109.46716 * 60.00091 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2491 6 6 2.0401 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2493 9 6 2.0394 -2.8851 -2.4986 10 6 1.4381 -4.2656 -2.5618 11 8 0.6766 -4.6357 -1.6934 12 7 1.7465 -5.0888 -3.5834 13 6 1.1623 -6.4310 -3.6446 14 6 1.6716 -7.1525 -4.8939 15 6 1.0702 -8.5328 -4.9571 16 1 0.3923 -8.8623 -4.1838 17 6 1.3848 -9.3746 -6.0028 18 7 0.8604 -10.5794 -6.0578 19 14 2.5569 -8.8043 -7.3408 20 1 3.9489 -9.1583 -6.9635 21 1 2.2070 -9.4691 -8.6219 22 1 2.4466 -7.3321 -7.5010 23 6 2.0399 -0.7212 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6768 -0.2075 2.1391 31 1 3.1301 -0.7216 1.2488 32 1 0.4402 -2.1638 1.2491 33 1 1.8939 -2.6778 2.1388 34 1 3.1301 -2.8849 -0.0003 35 1 1.6764 -3.9125 -0.0005 36 1 1.7510 -2.3223 -3.3864 37 1 3.1257 -2.9638 -2.4553 38 1 2.3552 -4.7928 -4.2782 39 1 1.4508 -6.9936 -2.7567 40 1 0.0760 -6.3527 -3.6881 41 1 1.3828 -6.5897 -5.7816 42 1 2.7579 -7.2306 -4.8509 43 1 1.0820 -11.1717 -6.7932 44 1 1.6761 -0.2072 -2.1391 45 1 3.1299 -0.7212 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:39 Heat of formation + Delta-G solvation = -105.883784 kcal Electronic energy + Delta-G solvation = -20671.802272 eV Core-core repulsion = 17686.340221 eV Total energy + Delta-G solvation = -2985.462051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19055 -39.89171 -36.66636 -34.80093 -34.73764 -32.92777 -31.97967 -28.65890 -28.14612 -27.12314 -26.34089 -23.03690 -22.64454 -22.01121 -20.83625 -19.33281 -18.99137 -17.80625 -16.73190 -16.61604 -16.27484 -16.02891 -15.65997 -15.44531 -15.19468 -14.73544 -14.69760 -14.37921 -14.05871 -13.70480 -13.35065 -13.27307 -13.03210 -12.70530 -12.66634 -12.61238 -12.30759 -12.15714 -12.09723 -12.05792 -11.77134 -11.76092 -11.62455 -11.53059 -11.16732 -10.98499 -10.79902 -10.76431 -10.46762 -9.96996 -8.31200 -6.38806 1.38448 1.41396 1.52744 1.75744 2.36197 2.36831 3.03826 3.72492 3.76994 3.79128 4.02131 4.14029 4.28773 4.36118 4.40570 4.41970 4.53260 4.54408 4.63922 4.70657 4.74412 4.80085 4.82980 4.87699 4.92151 5.00137 5.06339 5.13779 5.15957 5.17249 5.22531 5.26612 5.36235 5.39112 5.40763 5.47752 5.53930 5.57876 5.62763 5.67610 5.73836 6.21290 6.66155 6.73541 7.25857 7.39794 8.85803 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044721 B = 0.003091 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.953661 B = 9056.133883 C = 9339.709001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.137 4.137 4 C -0.103 4.103 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.069 4.069 8 H 0.059 0.941 9 C -0.129 4.129 10 C 0.500 3.500 11 O -0.586 6.586 12 N -0.721 5.721 13 C 0.145 3.855 14 C -0.012 4.012 15 C -0.541 4.541 16 H 0.026 0.974 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.236 1.236 23 C -0.097 4.097 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.413 0.587 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.268 0.732 44 H 0.072 0.928 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 27.364 9.105 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.088 4.088 8 H 0.077 0.923 9 C -0.168 4.168 10 C 0.288 3.712 11 O -0.467 6.467 12 N -0.373 5.373 13 C 0.021 3.979 14 C -0.049 4.049 15 C -0.580 4.580 16 H 0.045 0.955 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.159 1.159 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.611 26.945 9.623 29.366 hybrid contribution 0.066 -0.904 -0.689 1.139 sum 6.677 26.041 8.934 28.329 Atomic orbital electron populations 1.21980 0.95299 1.01347 1.01703 1.20528 0.95271 0.95611 0.95052 1.21827 1.01202 0.94428 1.01977 1.21574 1.00651 0.94343 0.97443 1.21526 1.00402 0.96363 0.97326 1.21645 1.00126 0.99136 0.94704 1.20897 1.00157 0.94900 0.92814 0.92286 1.21823 1.02990 0.90409 1.01583 1.21575 0.80857 0.88359 0.80380 1.90645 1.38224 1.77873 1.39939 1.46157 1.48993 1.15045 1.27119 1.20958 0.96608 0.81959 0.98404 1.19639 0.97069 0.93991 0.94246 1.21281 1.28236 0.99285 1.09182 0.95550 1.26119 0.97958 0.94495 1.00858 1.70077 1.46239 1.09210 1.33629 0.85507 0.78617 0.80423 0.77126 1.18929 1.21233 1.15870 1.21627 1.01103 0.92999 0.97724 0.92608 0.92484 0.93466 0.92130 0.92282 0.92545 0.91785 0.91471 0.92946 0.92497 0.91872 0.93548 0.86466 0.86643 0.75020 0.94262 0.94264 0.94494 0.94638 0.92299 0.90924 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 7.78 71.98 0.56 -1.77 16 2 C -0.06 -0.91 0.77 -52.18 -0.04 -0.95 16 3 C -0.14 -1.51 8.47 71.98 0.61 -0.90 16 4 C -0.10 -1.56 4.73 30.59 0.14 -1.42 16 5 C -0.12 -2.38 5.65 30.60 0.17 -2.21 16 6 C -0.12 -2.71 4.95 30.59 0.15 -2.56 16 7 C -0.07 -1.38 1.56 -10.80 -0.02 -1.40 16 8 H 0.06 1.47 6.24 -2.39 -0.01 1.45 16 9 C -0.13 -2.45 5.18 29.85 0.15 -2.30 16 10 C 0.50 15.22 7.55 87.66 0.66 15.88 16 11 O -0.59 -23.28 13.97 -3.03 -0.04 -23.32 16 12 N -0.72 -22.32 5.56 -463.05 -2.57 -24.90 16 13 C 0.14 6.01 5.61 86.38 0.48 6.50 16 14 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 15 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16 16 H 0.03 1.71 7.99 -2.92 -0.02 1.69 16 17 C 0.00 0.16 5.47 84.66 0.46 0.62 16 18 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 19 Si 0.96 42.37 27.47 68.60 1.88 44.26 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 23 C -0.10 -1.38 4.01 30.60 0.12 -1.26 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.93 4.81 -2.39 -0.01 0.92 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.16 6.43 -2.39 -0.02 1.15 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.42 5.95 -2.39 -0.01 1.41 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 9.74 8.47 -92.71 -0.79 8.96 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 42 H 0.04 1.47 7.57 -2.39 -0.02 1.46 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.52 342.34 3.51 -68.01 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.10 Total: 18.69 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.84 Total: -23.22 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.27 Total: -84.41 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.04 Total: -23.32 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal Total: -71.52 3.51 -68.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.872 kcal (2) G-P(sol) polarization free energy of solvation -71.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds