Wall clock time and date at job start Mon Mar 30 2020 07:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 C 1.52992 * 109.47610 * 120.00779 * 2 1 3 5 5 C 1.52998 * 109.47610 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46633 * 299.99884 * 5 4 2 7 7 C 1.53003 * 109.47345 * 59.99944 * 6 5 4 8 8 H 1.09000 * 109.46966 * 59.99735 * 7 6 5 9 9 C 1.52997 * 109.46992 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47084 * 294.99678 * 9 7 6 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47232 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.47088 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.52994 * 109.46956 * 299.99660 * 7 6 5 24 24 H 1.09004 * 109.46845 * 299.99465 * 1 2 3 25 25 H 1.09000 * 109.47829 * 59.99541 * 1 2 3 26 26 H 1.09002 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46831 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47815 * 300.00266 * 3 2 1 29 29 H 1.08996 * 109.47129 * 60.00868 * 3 2 1 30 30 H 1.09003 * 109.47491 * 59.99181 * 4 2 1 31 31 H 1.09004 * 109.46818 * 299.99773 * 4 2 1 32 32 H 1.08991 * 109.47333 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46914 * 59.99392 * 5 4 2 34 34 H 1.09002 * 109.47069 * 299.99413 * 6 5 4 35 35 H 1.09010 * 109.46941 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47497 * 174.99995 * 9 7 6 37 37 H 1.09001 * 109.47375 * 54.99636 * 9 7 6 38 38 H 0.97000 * 120.00296 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 40 40 H 1.09001 * 109.47271 * 299.99467 * 13 12 10 41 41 H 1.09002 * 109.46935 * 59.99717 * 14 13 12 42 42 H 1.08998 * 109.47061 * 300.00511 * 14 13 12 43 43 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 44 44 H 1.09000 * 109.47484 * 180.02562 * 23 7 6 45 45 H 1.09003 * 109.47525 * 300.00587 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2490 5 6 3.5701 -0.7219 1.2487 6 6 4.0794 -1.4434 -0.0006 7 6 3.5694 -0.7220 -1.2498 8 1 3.9331 0.3055 -1.2499 9 6 4.0793 -1.4432 -2.4991 10 6 5.5812 -1.3368 -2.5627 11 8 6.1844 -0.7431 -1.6940 12 7 6.2541 -1.9015 -3.5849 13 6 7.7142 -1.7986 -3.6463 14 6 8.2242 -2.5197 -4.8957 15 6 9.7260 -2.4133 -4.9593 16 1 10.2631 -1.8846 -4.1858 17 6 10.4143 -2.9909 -6.0051 18 7 9.7602 -3.6342 -6.9473 19 14 12.2760 -2.8596 -6.0836 20 1 12.8680 -3.4867 -4.8745 21 1 12.6694 -1.4288 -6.1419 22 1 12.7710 -3.5594 -7.2962 23 6 2.0394 -0.7215 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 1.2491 31 1 1.6768 -0.2076 2.1391 32 1 3.9334 -1.2354 2.1388 33 1 3.9337 0.3056 1.2485 34 1 3.7157 -2.4710 -0.0004 35 1 5.1695 -1.4434 -0.0012 36 1 3.6447 -0.9837 -3.3868 37 1 3.7909 -2.4935 -2.4555 38 1 5.7717 -2.3767 -4.2794 39 1 8.1486 -2.2588 -2.7589 40 1 8.0029 -0.7484 -3.6893 41 1 7.7897 -2.0598 -5.7834 42 1 7.9354 -3.5698 -4.8525 43 1 8.7935 -3.7027 -6.9064 44 1 1.6760 -0.2080 -2.1395 45 1 1.6757 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342640037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:42 Heat of formation + Delta-G solvation = -94.590197 kcal Electronic energy + Delta-G solvation = -20653.634140 eV Core-core repulsion = 17668.661816 eV Total energy + Delta-G solvation = -2984.972324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19668 -38.81186 -35.13091 -33.86986 -33.08209 -32.03900 -29.64067 -27.56101 -27.27481 -26.38886 -24.17385 -22.17324 -21.52788 -20.83033 -19.76156 -18.59061 -17.01275 -16.31591 -15.59646 -15.46430 -15.09708 -14.80334 -14.53895 -14.03462 -13.90394 -13.73705 -13.26143 -13.09101 -12.90316 -12.47737 -12.23737 -12.04347 -11.96312 -11.83637 -11.63413 -11.46000 -11.30613 -11.05163 -10.96716 -10.86981 -10.44735 -10.31748 -10.19275 -10.15608 -10.03184 -9.95666 -9.35845 -8.67378 -8.53453 -8.36734 -6.44940 -4.14839 3.00620 3.42260 3.44080 3.62557 3.66904 4.46179 4.49773 4.51835 4.58127 4.86398 4.96506 5.09966 5.18222 5.26021 5.31499 5.33281 5.39299 5.43993 5.49716 5.54386 5.59789 5.61807 5.67242 5.73362 5.81131 5.88812 5.90224 5.95180 6.12629 6.17294 6.18134 6.22959 6.25104 6.29105 6.49934 6.51757 6.60944 6.85956 7.24753 7.34383 7.96757 8.08992 8.37190 8.64269 8.79232 9.57134 10.96164 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049883 B = 0.002921 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.181480 B = 9583.042047 C = 9811.223621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.081 0.919 9 C -0.139 4.139 10 C 0.504 3.496 11 O -0.547 6.547 12 N -0.728 5.728 13 C 0.129 3.871 14 C 0.000 4.000 15 C -0.603 4.603 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.910 5.910 19 Si 1.071 2.929 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.282 1.282 23 C -0.103 4.103 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 5.551 12.847 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.099 0.901 9 C -0.179 4.179 10 C 0.290 3.710 11 O -0.425 6.425 12 N -0.378 5.378 13 C 0.007 3.993 14 C -0.038 4.038 15 C -0.641 4.641 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.207 1.207 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.595 5.549 12.563 22.321 hybrid contribution -1.629 0.136 0.485 1.705 sum -19.224 5.685 13.048 23.920 Atomic orbital electron populations 1.21869 0.94891 1.01534 1.01525 1.20507 0.94825 0.95659 0.95417 1.21991 1.01974 0.95148 1.01248 1.21603 0.96024 1.00049 0.96798 1.21546 0.95005 1.01152 0.97942 1.21710 1.02600 0.98061 0.93366 1.20925 0.94177 1.00515 0.93300 0.90104 1.21770 0.92846 1.02919 1.00410 1.20650 0.89865 0.78778 0.81667 1.90632 1.70534 1.42796 1.38553 1.46393 1.09528 1.55859 1.25982 1.21524 0.76597 1.00744 1.00467 1.19446 0.97548 0.95016 0.91771 1.21894 0.91119 1.39200 1.11916 0.92901 1.25892 1.07180 0.93215 0.92416 1.70805 1.10310 1.39620 1.33883 0.83510 0.73971 0.76429 0.76216 1.21307 1.21302 1.20707 1.21663 0.95045 1.00314 0.97069 0.92859 0.92771 0.92820 0.91623 0.92918 0.93045 0.92237 0.92431 0.92415 0.91708 0.92908 0.89785 0.89280 0.89304 0.77119 0.92535 0.92528 0.96909 0.96907 0.92175 0.92067 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.47 37.16 0.31 -0.71 16 2 C -0.06 -0.54 0.77 -154.51 -0.12 -0.66 16 3 C -0.15 -1.29 7.78 37.16 0.29 -1.00 16 4 C -0.11 -0.94 4.73 -26.74 -0.13 -1.07 16 5 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 6 C -0.12 -1.44 4.95 -26.73 -0.13 -1.57 16 7 C -0.07 -0.79 1.56 -90.62 -0.14 -0.93 16 8 H 0.08 1.04 6.24 -51.93 -0.32 0.72 16 9 C -0.14 -1.62 5.18 -27.88 -0.14 -1.76 16 10 C 0.50 8.28 7.55 -10.98 -0.08 8.20 16 11 O -0.55 -10.83 13.96 5.56 0.08 -10.76 16 12 N -0.73 -12.61 5.56 -60.29 -0.33 -12.95 16 13 C 0.13 2.80 5.61 -4.04 -0.02 2.77 16 14 C 0.00 -0.01 4.40 -27.88 -0.12 -0.13 16 15 C -0.60 -17.11 9.11 -34.44 -0.31 -17.42 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 18 N -0.91 -27.47 13.65 55.43 0.76 -26.72 16 19 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.10 -0.93 4.01 -26.73 -0.11 -1.04 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.66 4.81 -51.92 -0.25 0.41 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.27 5.95 -51.92 -0.31 0.96 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 5.87 8.47 -40.82 -0.35 5.53 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 42 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 43 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -31.42 344.64 -8.58 -40.00 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.23 Total: 1.46 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.96 Total: -16.33 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.42 Total: -39.66 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.42 -8.58 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.588 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds