Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 C 1.52992 * 109.47610 * 120.00779 * 2 1 3 5 5 C 1.52998 * 109.47610 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46633 * 299.99884 * 5 4 2 7 7 C 1.53003 * 109.47345 * 59.99944 * 6 5 4 8 8 H 1.09000 * 109.46966 * 59.99735 * 7 6 5 9 9 C 1.52997 * 109.46992 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47084 * 294.99678 * 9 7 6 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47232 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.47088 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.52994 * 109.46956 * 299.99660 * 7 6 5 24 24 H 1.09004 * 109.46845 * 299.99465 * 1 2 3 25 25 H 1.09000 * 109.47829 * 59.99541 * 1 2 3 26 26 H 1.09002 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46831 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47815 * 300.00266 * 3 2 1 29 29 H 1.08996 * 109.47129 * 60.00868 * 3 2 1 30 30 H 1.09003 * 109.47491 * 59.99181 * 4 2 1 31 31 H 1.09004 * 109.46818 * 299.99773 * 4 2 1 32 32 H 1.08991 * 109.47333 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46914 * 59.99392 * 5 4 2 34 34 H 1.09002 * 109.47069 * 299.99413 * 6 5 4 35 35 H 1.09010 * 109.46941 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47497 * 174.99995 * 9 7 6 37 37 H 1.09001 * 109.47375 * 54.99636 * 9 7 6 38 38 H 0.97000 * 120.00296 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 40 40 H 1.09001 * 109.47271 * 299.99467 * 13 12 10 41 41 H 1.09002 * 109.46935 * 59.99717 * 14 13 12 42 42 H 1.08998 * 109.47061 * 300.00511 * 14 13 12 43 43 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 44 44 H 1.09000 * 109.47484 * 180.02562 * 23 7 6 45 45 H 1.09003 * 109.47525 * 300.00587 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2490 5 6 3.5701 -0.7219 1.2487 6 6 4.0794 -1.4434 -0.0006 7 6 3.5694 -0.7220 -1.2498 8 1 3.9331 0.3055 -1.2499 9 6 4.0793 -1.4432 -2.4991 10 6 5.5812 -1.3368 -2.5627 11 8 6.1844 -0.7431 -1.6940 12 7 6.2541 -1.9015 -3.5849 13 6 7.7142 -1.7986 -3.6463 14 6 8.2242 -2.5197 -4.8957 15 6 9.7260 -2.4133 -4.9593 16 1 10.2631 -1.8846 -4.1858 17 6 10.4143 -2.9909 -6.0051 18 7 9.7602 -3.6342 -6.9473 19 14 12.2760 -2.8596 -6.0836 20 1 12.8680 -3.4867 -4.8745 21 1 12.6694 -1.4288 -6.1419 22 1 12.7710 -3.5594 -7.2962 23 6 2.0394 -0.7215 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 1.2491 31 1 1.6768 -0.2076 2.1391 32 1 3.9334 -1.2354 2.1388 33 1 3.9337 0.3056 1.2485 34 1 3.7157 -2.4710 -0.0004 35 1 5.1695 -1.4434 -0.0012 36 1 3.6447 -0.9837 -3.3868 37 1 3.7909 -2.4935 -2.4555 38 1 5.7717 -2.3767 -4.2794 39 1 8.1486 -2.2588 -2.7589 40 1 8.0029 -0.7484 -3.6893 41 1 7.7897 -2.0598 -5.7834 42 1 7.9354 -3.5698 -4.8525 43 1 8.7935 -3.7027 -6.9064 44 1 1.6760 -0.2080 -2.1395 45 1 1.6757 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -112.797349 kcal Electronic energy + Delta-G solvation = -20654.423661 eV Core-core repulsion = 17668.661816 eV Total energy + Delta-G solvation = -2985.761845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24469 -39.93960 -36.86870 -35.04247 -34.78441 -32.91896 -31.41073 -28.46050 -28.15724 -27.13635 -26.11700 -23.50944 -22.86319 -22.03903 -20.95352 -19.39673 -18.93132 -17.76007 -17.00408 -16.72755 -16.10803 -15.75196 -15.65740 -15.53825 -15.25555 -14.80978 -14.65230 -14.30116 -13.95399 -13.76527 -13.68986 -13.27107 -12.90705 -12.71608 -12.68354 -12.63605 -12.35461 -12.21256 -12.11895 -12.08391 -11.88107 -11.79261 -11.65858 -11.26725 -11.04070 -10.89925 -10.78699 -10.60033 -10.47932 -10.04865 -8.74364 -6.45521 1.52895 1.60365 1.67971 1.80501 2.28121 2.56568 3.11083 3.68729 3.71697 3.75956 3.97214 4.10439 4.23816 4.31326 4.32137 4.37150 4.50148 4.51245 4.59860 4.65322 4.66372 4.76061 4.79538 4.84610 4.89450 4.97159 5.03763 5.10315 5.11507 5.13438 5.19666 5.24480 5.30916 5.33464 5.35756 5.45924 5.51477 5.55627 5.60237 5.70549 5.92092 6.11263 6.48844 6.64038 7.29452 7.34948 8.68016 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049883 B = 0.002921 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.181480 B = 9583.042047 C = 9811.223621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.068 4.068 8 H 0.060 0.940 9 C -0.129 4.129 10 C 0.501 3.499 11 O -0.583 6.583 12 N -0.724 5.724 13 C 0.148 3.852 14 C 0.007 3.993 15 C -0.626 4.626 16 H 0.048 0.952 17 C -0.032 4.032 18 N -0.932 5.932 19 Si 1.117 2.883 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.280 1.280 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.410 0.590 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.989 5.494 13.094 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.086 4.086 8 H 0.079 0.921 9 C -0.169 4.169 10 C 0.290 3.710 11 O -0.464 6.464 12 N -0.375 5.375 13 C 0.024 3.976 14 C -0.030 4.030 15 C -0.664 4.664 16 H 0.067 0.933 17 C -0.230 4.230 18 N -0.569 5.569 19 Si 0.938 3.062 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.205 1.205 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.246 0.754 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.255 5.492 12.815 23.773 hybrid contribution -1.145 0.176 0.454 1.244 sum -20.400 5.667 13.269 24.987 Atomic orbital electron populations 1.21827 0.93483 1.02111 1.02018 1.20525 0.95857 0.95096 0.94960 1.21977 1.00790 0.95782 1.01750 1.21574 0.94316 1.00670 0.97448 1.21521 0.96554 1.00248 0.97213 1.21650 1.00266 0.98983 0.94744 1.20893 0.95993 0.99099 0.92658 0.92147 1.21830 0.88517 1.04808 1.01725 1.21568 0.91874 0.77311 0.80294 1.90629 1.71793 1.44213 1.39772 1.46232 1.07674 1.56545 1.27092 1.20988 0.79415 0.99046 0.98149 1.19290 0.96123 0.94749 0.92836 1.22330 0.93067 1.39069 1.11907 0.93323 1.27380 1.11452 0.92290 0.91883 1.70923 1.09962 1.41111 1.34900 0.82933 0.68960 0.77494 0.76845 1.19546 1.19529 1.20522 1.21630 0.92759 1.01285 0.97831 0.92405 0.92327 0.92185 0.93444 0.92544 0.92449 0.91539 0.91611 0.92364 0.92813 0.91995 0.93511 0.86685 0.86875 0.75444 0.93995 0.93973 0.97633 0.97639 0.93155 0.91019 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.47 71.98 0.61 -0.98 16 2 C -0.06 -0.94 0.77 -52.18 -0.04 -0.98 16 3 C -0.15 -2.37 7.78 71.98 0.56 -1.81 16 4 C -0.10 -1.60 4.73 30.59 0.14 -1.45 16 5 C -0.12 -2.39 5.65 30.59 0.17 -2.22 16 6 C -0.12 -2.81 4.95 30.60 0.15 -2.66 16 7 C -0.07 -1.44 1.56 -10.80 -0.02 -1.45 16 8 H 0.06 1.55 6.24 -2.39 -0.01 1.53 16 9 C -0.13 -2.74 5.18 29.85 0.15 -2.58 16 10 C 0.50 16.26 7.55 87.66 0.66 16.92 16 11 O -0.58 -23.70 13.96 -3.02 -0.04 -23.74 16 12 N -0.72 -24.86 5.56 -463.05 -2.57 -27.43 16 13 C 0.15 6.54 5.61 86.38 0.48 7.02 16 14 C 0.01 0.38 4.40 29.85 0.13 0.51 16 15 C -0.63 -35.87 9.11 25.60 0.23 -35.64 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 17 C -0.03 -1.83 5.46 84.66 0.46 -1.36 16 18 N -0.93 -56.57 13.65 21.45 0.29 -56.28 16 19 Si 1.12 50.11 29.90 68.60 2.05 52.16 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.10 -1.50 4.01 30.60 0.12 -1.37 16 24 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.94 4.81 -2.38 -0.01 0.93 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.19 6.43 -2.39 -0.02 1.18 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.46 5.95 -2.38 -0.01 1.44 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 11.73 8.47 -92.71 -0.79 10.94 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.28 8.01 -2.39 -0.02 0.26 16 42 H 0.01 0.28 8.01 -2.39 -0.02 0.26 16 43 H 0.26 15.63 7.22 -92.70 -0.67 14.97 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -68.48 344.64 3.82 -64.66 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.26 Total: 18.69 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.83 Total: -28.06 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.28 Total: -83.71 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -68.48 3.82 -64.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.133 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds