Wall clock time and date at job start Mon Mar 30 2020 07:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00091 * 2 1 3 5 5 C 1.53002 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47454 * 59.99922 * 5 4 2 7 7 C 1.52995 * 109.46602 * 299.99804 * 6 5 4 8 8 C 1.52997 * 109.47310 * 60.00177 * 7 6 5 9 9 H 1.09002 * 109.47153 * 59.99456 * 8 7 6 10 10 C 1.52997 * 109.47232 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.36770 * 180.89864 * 10 8 7 12 12 C 1.54380 * 110.41351 * 58.54812 * 10 8 7 13 13 C 1.54254 * 105.06098 * 217.36738 * 12 10 8 14 14 C 1.54377 * 105.06505 * 359.97438 * 13 12 10 15 15 N 1.48557 * 110.41474 * 303.37120 * 10 8 7 16 16 C 1.46897 * 111.00294 * 277.82206 * 15 10 8 17 17 C 1.50700 * 109.47392 * 169.99812 * 16 15 10 18 18 H 1.07998 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00184 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00234 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47042 * 60.00111 * 21 19 17 23 23 H 1.48498 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47397 * 300.00570 * 21 19 17 25 25 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46952 * 300.00089 * 1 2 3 28 28 H 0.96696 * 114.00036 * 299.99911 * 3 2 1 29 29 H 1.09001 * 109.47230 * 299.99295 * 4 2 1 30 30 H 1.09001 * 109.47375 * 60.00133 * 4 2 1 31 31 H 1.09002 * 109.47097 * 299.99801 * 5 4 2 32 32 H 1.09004 * 109.47006 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.46623 * 180.02562 * 6 5 4 34 34 H 1.08992 * 109.47060 * 59.99858 * 6 5 4 35 35 H 1.09002 * 109.47457 * 299.99819 * 7 6 5 36 36 H 1.09001 * 109.46885 * 179.97438 * 7 6 5 37 37 H 1.09007 * 110.31970 * 336.26157 * 12 10 8 38 38 H 1.08997 * 110.32323 * 98.36394 * 12 10 8 39 39 H 1.09006 * 110.32650 * 118.89362 * 13 12 10 40 40 H 1.08996 * 110.32748 * 240.99808 * 13 12 10 41 41 H 1.08998 * 110.41835 * 142.62538 * 14 13 12 42 42 H 1.09003 * 110.41240 * 264.96192 * 14 13 12 43 43 H 1.09005 * 109.46992 * 289.99597 * 16 15 10 44 44 H 1.08996 * 109.47394 * 49.99598 * 16 15 10 45 45 H 0.96996 * 120.00577 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2495 8 6 2.0395 -0.7215 1.2492 9 1 1.6759 -1.7491 1.2490 10 6 1.5295 -0.0007 2.4987 11 1 0.4398 -0.0057 2.5213 12 6 2.0623 1.4476 2.5400 13 6 2.3544 1.7250 4.0290 14 6 1.9730 0.4211 4.7624 15 7 2.0784 -0.6366 3.7240 16 6 1.2949 -1.8214 4.0985 17 6 2.0142 -2.5760 5.1867 18 1 2.9591 -2.2120 5.5623 19 6 1.4661 -3.7311 5.7028 20 7 0.3157 -4.1746 5.2451 21 14 2.3580 -4.6668 7.0513 22 1 2.5246 -3.7879 8.2367 23 1 1.5660 -5.8645 7.4298 24 1 3.6930 -5.0920 6.5590 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7211 1.8654 -0.7650 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.9337 0.3058 -1.2486 32 1 3.9334 -1.2360 -2.1386 33 1 5.1695 -1.4432 0.0008 34 1 3.7159 -2.4708 0.0002 35 1 3.9332 0.3055 1.2498 36 1 3.9321 -1.2363 2.1396 37 1 2.9768 1.5315 1.9528 38 1 1.3078 2.1393 2.1653 39 1 3.4123 1.9450 4.1728 40 1 1.7440 2.5542 4.3866 41 1 2.6706 0.2248 5.5765 42 1 0.9535 0.4833 5.1429 43 1 0.3147 -1.5097 4.4594 44 1 1.1734 -2.4665 3.2284 45 1 -0.0698 -4.9874 5.6079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346711008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:58 Heat of formation + Delta-G solvation = -67.534113 kcal Electronic energy + Delta-G solvation = -22515.744975 eV Core-core repulsion = 19531.945891 eV Total energy + Delta-G solvation = -2983.799084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03883 -37.46163 -34.84092 -33.04393 -31.68198 -30.94931 -30.72461 -27.25622 -26.20978 -25.79767 -22.87777 -22.08129 -21.08041 -20.34872 -19.67692 -18.41518 -16.29397 -16.14134 -15.31163 -15.14466 -14.76466 -14.45609 -14.09976 -13.80443 -13.58669 -13.11591 -12.74160 -12.67906 -12.40623 -12.07600 -11.96281 -11.69982 -11.50963 -11.45841 -11.26011 -11.00812 -10.89002 -10.62393 -10.53707 -10.41419 -10.30165 -10.18862 -10.02459 -9.68439 -9.61549 -9.55209 -9.31957 -9.05859 -8.36865 -7.24977 -5.97668 -3.98221 3.36470 3.39992 3.43511 4.42291 4.46997 4.79142 4.85252 4.98327 5.19614 5.32202 5.36602 5.39771 5.47051 5.52484 5.58180 5.72223 5.76285 5.79353 5.85646 5.91725 6.00952 6.03647 6.08339 6.19997 6.22966 6.27848 6.35923 6.39446 6.46518 6.54018 6.59915 6.66977 6.78631 6.80170 6.86494 7.01556 7.10215 7.30652 7.39271 7.86304 7.87781 8.09986 8.27931 8.61075 9.09934 9.65768 11.13268 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.006012 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.339938 B = 4656.348504 C = 5086.716401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.137 3.863 3 O -0.544 6.544 4 C -0.142 4.142 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.050 4.050 9 H 0.077 0.923 10 C 0.067 3.933 11 H 0.037 0.963 12 C -0.102 4.102 13 C -0.132 4.132 14 C 0.046 3.954 15 N -0.500 5.500 16 C 0.184 3.816 17 C -0.502 4.502 18 H 0.061 0.939 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.360 0.640 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.031 0.969 43 H -0.010 1.010 44 H 0.028 0.972 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 10.197 -12.612 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.096 3.904 3 O -0.349 6.349 4 C -0.179 4.179 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.139 4.139 8 C -0.069 4.069 9 H 0.096 0.904 10 C -0.041 4.041 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.170 4.170 14 C -0.082 4.082 15 N -0.224 5.224 16 C 0.058 3.942 17 C -0.540 4.540 18 H 0.079 0.921 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.206 0.794 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.008 0.992 44 H 0.046 0.954 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.361 9.636 -12.081 15.814 hybrid contribution -0.983 -0.374 0.336 1.104 sum 2.378 9.262 -11.745 15.145 Atomic orbital electron populations 1.22540 0.96474 1.02755 1.01991 1.21179 0.91697 0.82393 0.95113 1.86749 1.76993 1.23077 1.48090 1.22194 0.96905 1.01365 0.97478 1.21434 0.94848 1.00968 0.97699 1.21588 0.99772 0.99416 0.95167 1.21438 0.94219 1.00790 0.97418 1.20930 0.96675 0.98158 0.91169 0.90433 1.22529 0.96038 0.93649 0.91931 0.94502 1.22295 1.01718 0.95130 0.94805 1.22415 1.00660 0.97298 0.96600 1.22876 0.99311 0.90384 0.95629 1.65382 1.51306 1.04832 1.00892 1.19843 0.91092 0.87044 0.96176 1.21113 1.06374 1.07739 1.18808 0.92052 1.24981 0.95045 0.97439 0.97191 1.69947 1.17940 1.23089 1.43115 0.86588 0.79654 0.79139 0.82175 1.20342 1.21443 1.20212 0.93049 0.91721 0.91464 0.79416 0.91341 0.92428 0.91674 0.93011 0.92587 0.92431 0.91601 0.90091 0.89934 0.92724 0.92150 0.92930 0.90900 0.95046 0.99244 0.95413 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.47 37.16 0.31 -1.93 16 2 C 0.14 1.76 0.66 -90.62 -0.06 1.70 16 3 O -0.54 -6.45 8.28 -35.23 -0.29 -6.74 16 4 C -0.14 -1.62 4.92 -26.73 -0.13 -1.76 16 5 C -0.11 -1.31 5.78 -26.73 -0.15 -1.46 16 6 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 7 C -0.10 -1.64 4.63 -26.73 -0.12 -1.76 16 8 C -0.05 -0.83 1.60 -90.62 -0.15 -0.98 16 9 H 0.08 1.46 7.35 -51.93 -0.38 1.08 16 10 C 0.07 1.24 1.68 -66.07 -0.11 1.13 16 11 H 0.04 0.73 6.39 -51.93 -0.33 0.40 16 12 C -0.10 -1.64 4.63 -25.35 -0.12 -1.76 16 13 C -0.13 -2.16 7.00 -25.35 -0.18 -2.34 16 14 C 0.05 0.94 6.11 -2.17 -0.01 0.93 16 15 N -0.50 -10.94 4.16 -223.55 -0.93 -11.87 16 16 C 0.18 4.87 4.54 -4.98 -0.02 4.84 16 17 C -0.50 -14.34 8.97 -34.44 -0.31 -14.64 16 18 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.92 6.46 -51.93 -0.34 0.59 16 28 H 0.36 2.95 9.05 45.56 0.41 3.36 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.06 5.69 -51.93 -0.30 0.76 16 36 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 37 H 0.08 1.33 4.66 -51.93 -0.24 1.09 16 38 H 0.05 0.83 7.78 -51.93 -0.40 0.43 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 43 H -0.01 -0.29 7.77 -51.93 -0.40 -0.70 16 44 H 0.03 0.78 7.21 -51.93 -0.37 0.41 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -30.00 329.86 -9.17 -39.17 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.32 Total: 2.23 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.31 Total: -18.40 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.19 Total: -38.22 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.29 Total: -6.74 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.00 -9.17 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.368 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds