Wall clock time and date at job start Mon Mar 30 2020 07:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00091 * 2 1 3 5 5 C 1.53002 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47454 * 59.99922 * 5 4 2 7 7 C 1.52995 * 109.46602 * 299.99804 * 6 5 4 8 8 C 1.52997 * 109.47310 * 60.00177 * 7 6 5 9 9 H 1.09002 * 109.47153 * 59.99456 * 8 7 6 10 10 C 1.52997 * 109.47232 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.36770 * 180.89864 * 10 8 7 12 12 C 1.54380 * 110.41351 * 58.54812 * 10 8 7 13 13 C 1.54254 * 105.06098 * 217.36738 * 12 10 8 14 14 C 1.54377 * 105.06505 * 359.97438 * 13 12 10 15 15 N 1.48557 * 110.41474 * 303.37120 * 10 8 7 16 16 C 1.46897 * 111.00294 * 277.82206 * 15 10 8 17 17 C 1.50700 * 109.47392 * 169.99812 * 16 15 10 18 18 H 1.07998 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00184 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00234 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47042 * 60.00111 * 21 19 17 23 23 H 1.48498 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47397 * 300.00570 * 21 19 17 25 25 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46952 * 300.00089 * 1 2 3 28 28 H 0.96696 * 114.00036 * 299.99911 * 3 2 1 29 29 H 1.09001 * 109.47230 * 299.99295 * 4 2 1 30 30 H 1.09001 * 109.47375 * 60.00133 * 4 2 1 31 31 H 1.09002 * 109.47097 * 299.99801 * 5 4 2 32 32 H 1.09004 * 109.47006 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.46623 * 180.02562 * 6 5 4 34 34 H 1.08992 * 109.47060 * 59.99858 * 6 5 4 35 35 H 1.09002 * 109.47457 * 299.99819 * 7 6 5 36 36 H 1.09001 * 109.46885 * 179.97438 * 7 6 5 37 37 H 1.09007 * 110.31970 * 336.26157 * 12 10 8 38 38 H 1.08997 * 110.32323 * 98.36394 * 12 10 8 39 39 H 1.09006 * 110.32650 * 118.89362 * 13 12 10 40 40 H 1.08996 * 110.32748 * 240.99808 * 13 12 10 41 41 H 1.08998 * 110.41835 * 142.62538 * 14 13 12 42 42 H 1.09003 * 110.41240 * 264.96192 * 14 13 12 43 43 H 1.09005 * 109.46992 * 289.99597 * 16 15 10 44 44 H 1.08996 * 109.47394 * 49.99598 * 16 15 10 45 45 H 0.96996 * 120.00577 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2495 8 6 2.0395 -0.7215 1.2492 9 1 1.6759 -1.7491 1.2490 10 6 1.5295 -0.0007 2.4987 11 1 0.4398 -0.0057 2.5213 12 6 2.0623 1.4476 2.5400 13 6 2.3544 1.7250 4.0290 14 6 1.9730 0.4211 4.7624 15 7 2.0784 -0.6366 3.7240 16 6 1.2949 -1.8214 4.0985 17 6 2.0142 -2.5760 5.1867 18 1 2.9591 -2.2120 5.5623 19 6 1.4661 -3.7311 5.7028 20 7 0.3157 -4.1746 5.2451 21 14 2.3580 -4.6668 7.0513 22 1 2.5246 -3.7879 8.2367 23 1 1.5660 -5.8645 7.4298 24 1 3.6930 -5.0920 6.5590 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7211 1.8654 -0.7650 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.9337 0.3058 -1.2486 32 1 3.9334 -1.2360 -2.1386 33 1 5.1695 -1.4432 0.0008 34 1 3.7159 -2.4708 0.0002 35 1 3.9332 0.3055 1.2498 36 1 3.9321 -1.2363 2.1396 37 1 2.9768 1.5315 1.9528 38 1 1.3078 2.1393 2.1653 39 1 3.4123 1.9450 4.1728 40 1 1.7440 2.5542 4.3866 41 1 2.6706 0.2248 5.5765 42 1 0.9535 0.4833 5.1429 43 1 0.3147 -1.5097 4.4594 44 1 1.1734 -2.4665 3.2284 45 1 -0.0698 -4.9874 5.6079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346711008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:58 Heat of formation + Delta-G solvation = -87.030804 kcal Electronic energy + Delta-G solvation = -22516.590415 eV Core-core repulsion = 19531.945891 eV Total energy + Delta-G solvation = -2984.644524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29294 -38.91559 -35.87787 -35.17382 -32.90711 -32.60697 -32.00140 -28.57956 -28.23752 -26.99151 -24.55376 -23.70220 -22.22250 -21.69055 -21.13135 -19.77306 -18.44999 -17.20127 -16.95945 -16.59054 -16.07553 -15.98627 -15.45588 -15.14667 -14.86256 -14.64548 -14.50043 -14.03404 -13.79022 -13.53394 -13.27403 -13.19283 -12.93787 -12.74268 -12.71086 -12.48914 -12.44749 -12.16845 -12.12818 -11.84312 -11.77902 -11.63990 -11.49192 -11.24675 -11.21426 -10.94985 -10.70469 -10.60846 -10.35561 -9.09616 -8.22159 -6.32538 1.37384 1.41217 1.49153 2.38259 3.09474 3.34054 3.45259 3.76217 3.85888 3.93429 4.02679 4.10654 4.27117 4.30200 4.36158 4.48576 4.51425 4.61103 4.66720 4.75760 4.76010 4.85389 4.92300 4.96066 5.02861 5.07627 5.09810 5.10484 5.17901 5.20132 5.22615 5.26550 5.35948 5.43748 5.44943 5.47597 5.59245 5.65008 5.69351 5.78075 6.04951 6.31752 6.59106 6.83512 7.13215 7.37298 8.88843 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.006012 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.339938 B = 4656.348504 C = 5086.716401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.149 3.851 3 O -0.550 6.550 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.051 4.051 9 H 0.040 0.960 10 C 0.065 3.935 11 H 0.018 0.982 12 C -0.087 4.087 13 C -0.121 4.121 14 C 0.040 3.960 15 N -0.507 5.507 16 C 0.206 3.794 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.383 0.617 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.014 0.986 43 H -0.045 1.045 44 H -0.001 1.001 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 11.898 -13.990 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.108 3.892 3 O -0.357 6.357 4 C -0.177 4.177 5 C -0.142 4.142 6 C -0.159 4.159 7 C -0.131 4.131 8 C -0.070 4.070 9 H 0.058 0.942 10 C -0.044 4.044 11 H 0.036 0.964 12 C -0.125 4.125 13 C -0.159 4.159 14 C -0.088 4.088 15 N -0.231 5.231 16 C 0.079 3.921 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.232 0.768 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.033 0.967 43 H -0.028 1.028 44 H 0.017 0.983 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.574 11.367 -13.479 18.216 hybrid contribution -1.394 -0.885 0.761 1.818 sum 3.180 10.482 -12.718 16.785 Atomic orbital electron populations 1.22517 0.96277 1.02042 1.02741 1.20855 0.91635 0.83062 0.93631 1.86666 1.76992 1.22319 1.49757 1.22181 0.96873 1.00897 0.97703 1.21397 0.94767 1.01294 0.96782 1.21582 1.00405 0.98607 0.95350 1.21313 0.93757 1.00890 0.97107 1.20866 0.97026 0.96598 0.92492 0.94202 1.22660 0.95052 0.95528 0.91151 0.96402 1.22219 1.02334 0.93149 0.94788 1.22388 1.01980 0.95501 0.96046 1.22938 0.98170 0.92131 0.95566 1.65334 1.50408 1.04480 1.02851 1.19417 0.89840 0.88476 0.94371 1.21406 1.06475 1.08538 1.19622 0.92340 1.25928 0.95779 0.98300 0.99661 1.70082 1.19434 1.23600 1.44462 0.85443 0.78504 0.77754 0.78962 1.19262 1.20590 1.19329 0.89726 0.93263 0.93187 0.76815 0.92530 0.89222 0.90651 0.91176 0.91558 0.93987 0.90796 0.94063 0.89166 0.90928 0.90732 0.90503 0.91956 0.96724 1.02756 0.98329 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 8.47 71.98 0.61 -3.66 16 2 C 0.15 3.63 0.66 -10.80 -0.01 3.63 16 3 O -0.55 -11.17 8.28 -148.98 -1.23 -12.40 16 4 C -0.14 -2.84 4.92 30.59 0.15 -2.69 16 5 C -0.11 -2.16 5.78 30.60 0.18 -1.98 16 6 C -0.12 -3.29 5.92 30.59 0.18 -3.11 16 7 C -0.09 -3.05 4.63 30.59 0.14 -2.91 16 8 C -0.05 -1.73 1.60 -10.80 -0.02 -1.75 16 9 H 0.04 1.63 7.35 -2.39 -0.02 1.62 16 10 C 0.06 2.46 1.68 45.06 0.08 2.53 16 11 H 0.02 0.75 6.39 -2.39 -0.02 0.73 16 12 C -0.09 -2.68 4.63 31.49 0.15 -2.53 16 13 C -0.12 -3.79 7.00 31.49 0.22 -3.57 16 14 C 0.04 1.68 6.11 86.44 0.53 2.21 16 15 N -0.51 -23.39 4.16 -861.18 -3.59 -26.98 16 16 C 0.21 11.68 4.54 85.56 0.39 12.07 16 17 C -0.52 -31.21 8.97 25.60 0.23 -30.98 16 18 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 19 C 0.00 0.06 5.46 84.65 0.46 0.53 16 20 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 21 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.36 6.46 -2.39 -0.02 1.35 16 28 H 0.38 4.43 9.05 -74.06 -0.67 3.76 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.44 7.68 -2.39 -0.02 1.43 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 2.28 5.69 -2.39 -0.01 2.27 16 36 H 0.04 1.65 7.56 -2.39 -0.02 1.63 16 37 H 0.09 2.67 4.66 -2.38 -0.01 2.66 16 38 H 0.07 2.00 7.78 -2.39 -0.02 1.99 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.01 0.64 7.76 -2.39 -0.02 0.62 16 43 H -0.05 -2.81 7.77 -2.38 -0.02 -2.83 16 44 H 0.00 -0.08 7.21 -2.39 -0.02 -0.10 16 45 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -68.52 329.86 1.06 -67.47 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.28 Total: 14.20 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.29 Total: -32.24 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.30 Total: -84.98 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.23 Total: -12.40 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -68.52 1.06 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.565 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds