Wall clock time and date at job start Mon Mar 30 2020 07:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47048 * 2 1 4 4 C 1.52992 * 109.47353 * 240.00106 * 2 1 3 5 5 C 1.52999 * 109.47196 * 300.00016 * 4 2 1 6 6 C 1.52995 * 109.47078 * 299.99782 * 5 4 2 7 7 C 1.53006 * 109.47112 * 60.00051 * 6 5 4 8 8 C 1.52998 * 109.47293 * 119.99795 * 2 1 3 9 9 H 1.09002 * 109.47272 * 179.97438 * 8 2 1 10 10 C 1.53000 * 109.47203 * 300.00147 * 8 2 1 11 11 H 1.08996 * 110.42136 * 63.93563 * 10 8 2 12 12 C 1.54909 * 110.37346 * 186.24403 * 10 8 2 13 13 C 1.55132 * 101.65576 * 155.90206 * 12 10 8 14 14 C 1.54321 * 103.01687 * 324.34662 * 13 12 10 15 15 N 1.47440 * 107.23612 * 22.28535 * 14 13 12 16 16 C 1.46892 * 111.00543 * 123.25620 * 15 14 13 17 17 C 1.50700 * 109.47150 * 76.55062 * 16 15 14 18 18 H 1.07996 * 119.99782 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00151 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99650 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46954 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47310 * 60.00693 * 21 19 17 24 24 H 1.48499 * 109.47352 * 300.00443 * 21 19 17 25 25 H 1.09003 * 109.47018 * 293.05023 * 1 2 3 26 26 H 1.09004 * 109.47398 * 53.05142 * 1 2 3 27 27 H 1.09005 * 109.47171 * 173.05491 * 1 2 3 28 28 H 0.96704 * 114.00074 * 300.00368 * 3 2 1 29 29 H 1.08995 * 109.47323 * 179.97438 * 4 2 1 30 30 H 1.09006 * 109.46971 * 59.99482 * 4 2 1 31 31 H 1.09000 * 109.47109 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46987 * 59.99734 * 5 4 2 33 33 H 1.09002 * 109.47172 * 299.99838 * 6 5 4 34 34 H 1.09006 * 109.47470 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.47153 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47228 * 60.00217 * 7 6 5 37 37 H 1.08999 * 110.98828 * 37.80507 * 12 10 8 38 38 H 1.09001 * 110.98948 * 273.99646 * 12 10 8 39 39 H 1.09000 * 110.70941 * 205.96807 * 13 12 10 40 40 H 1.08999 * 110.71039 * 82.72410 * 13 12 10 41 41 H 1.08999 * 109.89161 * 262.87331 * 14 13 12 42 42 H 1.09009 * 109.89091 * 141.69009 * 14 13 12 43 43 H 1.09002 * 109.46959 * 316.55484 * 16 15 14 44 44 H 1.09005 * 109.47745 * 196.55628 * 16 15 14 45 45 H 0.96998 * 120.00554 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0400 -2.8849 -0.0001 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2490 10 6 1.5300 0.0001 2.4985 11 1 0.4425 -0.0513 2.5499 12 6 2.1598 -0.6169 3.7722 13 6 2.0563 0.5619 4.7755 14 6 2.2987 1.7986 3.8848 15 7 1.9795 1.4085 2.4993 16 6 0.9521 2.2892 1.9277 17 6 1.5751 3.6083 1.5495 18 1 2.6289 3.7754 1.7166 19 6 0.7999 4.6014 0.9891 20 7 -0.4832 4.3976 0.7852 21 14 1.5723 6.2361 0.5197 22 1 0.5337 7.1265 -0.0580 23 1 2.6429 6.0078 -0.4837 24 1 2.1541 6.8739 1.7279 25 1 -0.3633 0.4024 0.9456 26 1 -0.3634 0.6177 -0.8213 27 1 -0.3634 -1.0202 -0.1243 28 1 1.7209 1.8654 -0.7650 29 1 3.1299 -0.7208 -1.2494 30 1 1.6766 -0.2073 -2.1392 31 1 1.8930 -2.6773 -2.1394 32 1 0.4400 -2.1637 -1.2492 33 1 3.1301 -2.8849 -0.0001 34 1 1.6764 -3.9125 0.0002 35 1 1.8937 -2.6773 2.1393 36 1 0.4400 -2.1638 1.2493 37 1 3.2001 -0.8923 3.5993 38 1 1.5825 -1.4748 4.1170 39 1 2.8259 0.4832 5.5433 40 1 1.0641 0.5994 5.2251 41 1 3.3424 2.1056 3.9525 42 1 1.6487 2.6153 4.1992 43 1 0.1663 2.4565 2.6643 44 1 0.5250 1.8215 1.0406 45 1 -0.8843 3.5486 1.0287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346711009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:01 Heat of formation + Delta-G solvation = -45.796752 kcal Electronic energy + Delta-G solvation = -23104.612336 eV Core-core repulsion = 20121.755855 eV Total energy + Delta-G solvation = -2982.856481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07730 -37.40886 -35.09898 -33.08276 -31.54337 -30.59430 -29.97222 -27.52074 -26.23081 -25.40584 -22.66474 -22.17571 -21.62972 -20.16261 -19.39247 -18.19955 -16.53629 -16.27773 -15.30492 -14.97871 -14.90336 -14.48487 -13.66853 -13.56373 -13.34198 -13.01904 -12.90913 -12.70209 -12.52088 -12.22023 -11.84878 -11.53658 -11.48594 -11.07499 -11.05239 -10.85524 -10.75989 -10.66090 -10.53750 -10.49281 -10.32818 -10.16568 -10.12222 -9.94944 -9.69348 -9.37907 -8.60974 -8.41088 -7.96658 -6.94405 -6.12958 -3.75795 3.54034 3.55639 3.74193 4.62718 4.70600 4.78067 4.89129 5.11664 5.17622 5.22867 5.33720 5.44941 5.51873 5.53926 5.59292 5.64289 5.66333 5.73452 5.81201 5.86752 5.91197 6.05197 6.09450 6.11440 6.14086 6.18795 6.24631 6.26820 6.31868 6.41557 6.49070 6.50704 6.67853 6.69926 6.76585 6.82215 6.92218 7.34492 7.40989 8.18951 8.39100 8.59550 8.70749 8.90638 9.16660 9.89747 11.25027 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.007918 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.949023 B = 3535.195372 C = 4531.369886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.134 3.866 3 O -0.496 6.496 4 C -0.144 4.144 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.049 4.049 9 H 0.075 0.925 10 C 0.078 3.922 11 H 0.040 0.960 12 C -0.124 4.124 13 C -0.144 4.144 14 C 0.051 3.949 15 N -0.492 5.492 16 C 0.175 3.825 17 C -0.547 4.547 18 H 0.049 0.951 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 1.066 2.934 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.293 1.293 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.361 0.639 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.051 0.949 43 H -0.047 1.047 44 H 0.062 0.938 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -14.137 -0.278 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.093 3.907 3 O -0.299 6.299 4 C -0.182 4.182 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.068 4.068 9 H 0.093 0.907 10 C -0.031 4.031 11 H 0.058 0.942 12 C -0.162 4.162 13 C -0.183 4.183 14 C -0.078 4.078 15 N -0.215 5.215 16 C 0.050 3.950 17 C -0.586 4.586 18 H 0.067 0.933 19 C -0.196 4.196 20 N -0.567 5.567 21 Si 0.896 3.104 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.220 1.220 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.207 0.793 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.069 0.931 43 H -0.029 1.029 44 H 0.080 0.920 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.911 -12.748 -0.690 13.353 hybrid contribution -0.680 -1.344 0.652 1.641 sum 3.232 -14.092 -0.038 14.458 Atomic orbital electron populations 1.22770 0.97315 1.01026 1.03067 1.20877 0.91787 0.84939 0.93123 1.87282 1.76025 1.19448 1.47142 1.22285 1.01303 0.95766 0.98850 1.21562 1.00886 0.95704 0.97454 1.21522 1.00731 0.98339 0.94867 1.21639 1.00872 0.95296 0.97523 1.20932 1.00594 0.92012 0.93285 0.90703 1.22487 0.96407 0.91333 0.92904 0.94240 1.22738 1.00871 0.96992 0.95565 1.22831 1.00769 0.96562 0.98120 1.22707 1.00801 0.95507 0.88742 1.63402 1.43210 0.99519 1.15399 1.20426 0.88102 0.92474 0.93963 1.21911 0.96744 0.98146 1.41847 0.93265 1.25644 0.95451 1.02952 0.95591 1.70802 1.11505 1.26975 1.47449 0.83567 0.74878 0.75686 0.76223 1.21322 1.21705 1.21984 0.91201 0.92752 0.92603 0.79306 0.91621 0.92291 0.92571 0.91789 0.92104 0.92443 0.91892 0.91932 0.91266 0.92176 0.91904 0.92446 0.92242 0.93100 1.02935 0.92043 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 6.93 37.16 0.26 -2.82 16 2 C 0.13 2.24 0.73 -90.63 -0.07 2.17 16 3 O -0.50 -10.28 7.37 -35.23 -0.26 -10.54 16 4 C -0.14 -2.02 5.07 -26.74 -0.14 -2.16 16 5 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 6 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 7 C -0.12 -1.47 4.77 -26.73 -0.13 -1.60 16 8 C -0.05 -0.79 1.54 -90.62 -0.14 -0.93 16 9 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 10 C 0.08 1.41 1.77 -66.19 -0.12 1.29 16 11 H 0.04 0.77 6.26 -51.93 -0.33 0.44 16 12 C -0.12 -1.90 5.64 -24.60 -0.14 -2.04 16 13 C -0.14 -2.36 6.94 -24.91 -0.17 -2.53 16 14 C 0.05 1.05 6.54 -2.84 -0.02 1.03 16 15 N -0.49 -10.82 3.84 -224.81 -0.86 -11.68 16 16 C 0.18 4.47 2.15 -4.98 -0.01 4.46 16 17 C -0.55 -15.44 8.05 -34.44 -0.28 -15.72 16 18 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 19 C 0.00 0.13 5.46 -17.82 -0.10 0.04 16 20 N -0.93 -28.08 13.65 55.43 0.76 -27.33 16 21 Si 1.07 25.88 29.90 -169.99 -5.08 20.80 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H 0.07 1.34 4.64 -51.93 -0.24 1.10 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.80 4.84 -51.93 -0.25 0.54 16 28 H 0.36 7.28 9.05 45.56 0.41 7.69 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.74 7.40 -51.93 -0.38 0.35 16 36 H 0.06 0.80 6.59 -51.93 -0.34 0.46 16 37 H 0.07 1.03 8.02 -51.93 -0.42 0.62 16 38 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.16 7.36 -51.92 -0.38 0.78 16 43 H -0.05 -1.33 7.61 -51.93 -0.40 -1.73 16 44 H 0.06 1.52 2.66 -51.93 -0.14 1.39 16 45 H 0.26 7.96 7.22 -40.82 -0.29 7.66 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -30.57 318.42 -8.94 -39.50 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.93 Total: 6.28 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.35 Total: -21.83 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.11 Total: -39.01 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.26 Total: -10.54 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.57 -8.94 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.294 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds