Wall clock time and date at job start Mon Mar 30 2020 07:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47048 * 2 1 4 4 C 1.52992 * 109.47353 * 240.00106 * 2 1 3 5 5 C 1.52999 * 109.47196 * 300.00016 * 4 2 1 6 6 C 1.52995 * 109.47078 * 299.99782 * 5 4 2 7 7 C 1.53006 * 109.47112 * 60.00051 * 6 5 4 8 8 C 1.52998 * 109.47293 * 119.99795 * 2 1 3 9 9 H 1.09002 * 109.47272 * 179.97438 * 8 2 1 10 10 C 1.53000 * 109.47203 * 300.00147 * 8 2 1 11 11 H 1.08996 * 110.42136 * 63.93563 * 10 8 2 12 12 C 1.54909 * 110.37346 * 186.24403 * 10 8 2 13 13 C 1.55132 * 101.65576 * 155.90206 * 12 10 8 14 14 C 1.54321 * 103.01687 * 324.34662 * 13 12 10 15 15 N 1.47440 * 107.23612 * 22.28535 * 14 13 12 16 16 C 1.46892 * 111.00543 * 123.25620 * 15 14 13 17 17 C 1.50700 * 109.47150 * 76.55062 * 16 15 14 18 18 H 1.07996 * 119.99782 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00151 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99650 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46954 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47310 * 60.00693 * 21 19 17 24 24 H 1.48499 * 109.47352 * 300.00443 * 21 19 17 25 25 H 1.09003 * 109.47018 * 293.05023 * 1 2 3 26 26 H 1.09004 * 109.47398 * 53.05142 * 1 2 3 27 27 H 1.09005 * 109.47171 * 173.05491 * 1 2 3 28 28 H 0.96704 * 114.00074 * 300.00368 * 3 2 1 29 29 H 1.08995 * 109.47323 * 179.97438 * 4 2 1 30 30 H 1.09006 * 109.46971 * 59.99482 * 4 2 1 31 31 H 1.09000 * 109.47109 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46987 * 59.99734 * 5 4 2 33 33 H 1.09002 * 109.47172 * 299.99838 * 6 5 4 34 34 H 1.09006 * 109.47470 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.47153 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47228 * 60.00217 * 7 6 5 37 37 H 1.08999 * 110.98828 * 37.80507 * 12 10 8 38 38 H 1.09001 * 110.98948 * 273.99646 * 12 10 8 39 39 H 1.09000 * 110.70941 * 205.96807 * 13 12 10 40 40 H 1.08999 * 110.71039 * 82.72410 * 13 12 10 41 41 H 1.08999 * 109.89161 * 262.87331 * 14 13 12 42 42 H 1.09009 * 109.89091 * 141.69009 * 14 13 12 43 43 H 1.09002 * 109.46959 * 316.55484 * 16 15 14 44 44 H 1.09005 * 109.47745 * 196.55628 * 16 15 14 45 45 H 0.96998 * 120.00554 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0400 -2.8849 -0.0001 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2490 10 6 1.5300 0.0001 2.4985 11 1 0.4425 -0.0513 2.5499 12 6 2.1598 -0.6169 3.7722 13 6 2.0563 0.5619 4.7755 14 6 2.2987 1.7986 3.8848 15 7 1.9795 1.4085 2.4993 16 6 0.9521 2.2892 1.9277 17 6 1.5751 3.6083 1.5495 18 1 2.6289 3.7754 1.7166 19 6 0.7999 4.6014 0.9891 20 7 -0.4832 4.3976 0.7852 21 14 1.5723 6.2361 0.5197 22 1 0.5337 7.1265 -0.0580 23 1 2.6429 6.0078 -0.4837 24 1 2.1541 6.8739 1.7279 25 1 -0.3633 0.4024 0.9456 26 1 -0.3634 0.6177 -0.8213 27 1 -0.3634 -1.0202 -0.1243 28 1 1.7209 1.8654 -0.7650 29 1 3.1299 -0.7208 -1.2494 30 1 1.6766 -0.2073 -2.1392 31 1 1.8930 -2.6773 -2.1394 32 1 0.4400 -2.1637 -1.2492 33 1 3.1301 -2.8849 -0.0001 34 1 1.6764 -3.9125 0.0002 35 1 1.8937 -2.6773 2.1393 36 1 0.4400 -2.1638 1.2493 37 1 3.2001 -0.8923 3.5993 38 1 1.5825 -1.4748 4.1170 39 1 2.8259 0.4832 5.5433 40 1 1.0641 0.5994 5.2251 41 1 3.3424 2.1056 3.9525 42 1 1.6487 2.6153 4.1992 43 1 0.1663 2.4565 2.6643 44 1 0.5250 1.8215 1.0406 45 1 -0.8843 3.5486 1.0287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346711009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:00 Heat of formation + Delta-G solvation = -65.806685 kcal Electronic energy + Delta-G solvation = -23105.480032 eV Core-core repulsion = 20121.755855 eV Total energy + Delta-G solvation = -2983.724177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43647 -38.86615 -36.52248 -35.13339 -32.82349 -32.30190 -31.27479 -28.85631 -27.77884 -27.23591 -24.38428 -23.61697 -22.85912 -21.62540 -20.80584 -19.51451 -18.65936 -17.67232 -16.84858 -16.45649 -16.30891 -15.70714 -15.59261 -14.87298 -14.80704 -14.62370 -14.22766 -14.11795 -13.91134 -13.83765 -13.28456 -12.95613 -12.89902 -12.74317 -12.55578 -12.40112 -12.19019 -12.11362 -11.93190 -11.90217 -11.86325 -11.78544 -11.50506 -11.28641 -11.12522 -10.66711 -10.56463 -10.42840 -9.88465 -8.78737 -8.44578 -6.10277 1.53890 1.61928 1.81205 2.63075 3.27750 3.33748 3.48094 3.67598 3.84424 3.93451 3.99571 4.14578 4.19878 4.24255 4.33648 4.36089 4.39116 4.54538 4.55469 4.65979 4.69943 4.76764 4.85858 4.87920 4.95325 5.00687 5.04182 5.07299 5.08733 5.11098 5.21156 5.25633 5.31894 5.36588 5.40076 5.42797 5.48555 5.52811 5.66726 6.11888 6.28660 6.63962 6.68617 6.98700 7.16270 7.63318 8.90574 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.007918 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.949023 B = 3535.195372 C = 4531.369886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 O -0.525 6.525 4 C -0.137 4.137 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.044 4.044 9 H 0.063 0.937 10 C 0.071 3.929 11 H 0.024 0.976 12 C -0.112 4.112 13 C -0.134 4.134 14 C 0.043 3.957 15 N -0.504 5.504 16 C 0.192 3.808 17 C -0.550 4.550 18 H 0.032 0.968 19 C -0.042 4.042 20 N -0.948 5.948 21 Si 1.113 2.887 22 H -0.287 1.287 23 H -0.272 1.272 24 H -0.282 1.282 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.356 0.644 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.015 0.985 43 H -0.092 1.092 44 H 0.071 0.929 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -16.639 -0.447 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 O -0.329 6.329 4 C -0.175 4.175 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.148 4.148 8 C -0.063 4.063 9 H 0.082 0.918 10 C -0.038 4.038 11 H 0.042 0.958 12 C -0.150 4.150 13 C -0.173 4.173 14 C -0.085 4.085 15 N -0.227 5.227 16 C 0.066 3.934 17 C -0.589 4.589 18 H 0.050 0.950 19 C -0.237 4.237 20 N -0.588 5.588 21 Si 0.937 3.063 22 H -0.212 1.212 23 H -0.198 1.198 24 H -0.208 1.208 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.202 0.798 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.033 0.967 43 H -0.075 1.075 44 H 0.088 0.912 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.019 -15.290 -0.845 16.115 hybrid contribution -1.011 -0.580 0.736 1.379 sum 4.008 -15.870 -0.109 16.369 Atomic orbital electron populations 1.22672 0.97546 1.02279 1.00775 1.21165 0.91616 0.83546 0.95220 1.87230 1.76468 1.21836 1.47316 1.22175 1.00925 0.97307 0.97080 1.21570 1.00972 0.93887 0.98867 1.21523 1.00944 0.99272 0.93326 1.21631 1.00846 0.92812 0.99469 1.20947 0.99754 0.93966 0.91614 0.91846 1.22664 0.95845 0.89399 0.95875 0.95834 1.22736 1.01802 0.97250 0.93232 1.22770 1.01820 0.94477 0.98199 1.22733 0.99681 0.96802 0.89315 1.63340 1.41897 1.01254 1.16238 1.20186 0.87614 0.92495 0.93083 1.22096 0.95799 0.99671 1.41360 0.94977 1.26997 0.95224 1.06274 0.95249 1.70930 1.12433 1.26424 1.49002 0.82952 0.74603 0.72002 0.76744 1.21236 1.19770 1.20847 0.94319 0.93906 0.89674 0.79849 0.92065 0.92377 0.90591 0.91586 0.91822 0.89854 0.90046 0.91913 0.90090 0.88996 0.88970 0.92400 0.92448 0.96667 1.07527 0.91169 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 6.93 71.98 0.50 -5.43 16 2 C 0.13 4.17 0.73 -10.80 -0.01 4.16 16 3 O -0.53 -22.60 7.37 -148.98 -1.10 -23.70 16 4 C -0.14 -3.66 5.07 30.59 0.16 -3.50 16 5 C -0.12 -2.34 5.65 30.59 0.17 -2.16 16 6 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 7 C -0.11 -2.44 4.77 30.60 0.15 -2.29 16 8 C -0.04 -1.35 1.54 -10.79 -0.02 -1.36 16 9 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 10 C 0.07 2.54 1.77 45.39 0.08 2.62 16 11 H 0.02 0.93 6.26 -2.39 -0.01 0.92 16 12 C -0.11 -3.17 5.64 31.98 0.18 -2.99 16 13 C -0.13 -4.20 6.94 31.77 0.22 -3.98 16 14 C 0.04 1.83 6.54 86.65 0.57 2.40 16 15 N -0.50 -22.91 3.84 -865.18 -3.32 -26.23 16 16 C 0.19 10.36 2.15 85.56 0.18 10.55 16 17 C -0.55 -32.45 8.05 25.60 0.21 -32.25 16 18 H 0.03 1.96 7.81 -2.91 -0.02 1.94 16 19 C -0.04 -2.48 5.46 84.66 0.46 -2.02 16 20 N -0.95 -59.45 13.65 21.45 0.29 -59.15 16 21 Si 1.11 53.00 29.90 68.60 2.05 55.05 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H 0.04 1.54 4.64 -2.39 -0.01 1.53 16 26 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 27 H 0.08 2.32 4.84 -2.38 -0.01 2.31 16 28 H 0.36 15.21 9.05 -74.05 -0.67 14.54 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.32 6.28 -2.39 -0.01 1.31 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.54 7.40 -2.38 -0.02 1.53 16 36 H 0.06 1.41 6.59 -2.39 -0.02 1.40 16 37 H 0.08 2.14 8.02 -2.39 -0.02 2.12 16 38 H 0.09 2.07 8.04 -2.39 -0.02 2.05 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.01 0.72 7.36 -2.38 -0.02 0.71 16 43 H -0.09 -5.69 7.61 -2.39 -0.02 -5.71 16 44 H 0.07 3.69 2.66 -2.38 -0.01 3.68 16 45 H 0.25 15.91 7.22 -92.71 -0.67 15.24 16 Total: -1.00 -69.55 318.42 1.35 -68.20 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.40 Total: 24.00 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.03 Total: -38.17 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.03 Total: -85.38 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.10 Total: -23.70 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 2.05 Total: 55.05 kcal Total: -69.55 1.35 -68.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.393 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds