Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47053 * 2 1 4 4 C 1.52994 * 109.47248 * 239.99873 * 2 1 3 5 5 C 1.53002 * 109.47418 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46669 * 60.00131 * 5 4 2 7 7 C 1.53001 * 109.47117 * 299.99792 * 6 5 4 8 8 C 1.52996 * 109.47012 * 60.00246 * 7 6 5 9 9 H 1.09006 * 109.47013 * 60.00241 * 8 7 6 10 10 C 1.53000 * 109.47390 * 179.97438 * 8 7 6 11 11 H 1.08994 * 110.42265 * 183.39731 * 10 8 7 12 12 C 1.54911 * 110.37363 * 305.71609 * 10 8 7 13 13 C 1.55147 * 101.65186 * 155.89494 * 12 10 8 14 14 C 1.54323 * 103.02023 * 324.34632 * 13 12 10 15 15 N 1.47449 * 107.23057 * 22.28234 * 14 13 12 16 16 C 1.46905 * 110.99767 * 123.26014 * 15 14 13 17 17 C 1.50702 * 109.47120 * 76.28938 * 16 15 14 18 18 H 1.07999 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47683 * 180.02562 * 21 19 17 23 23 H 1.48510 * 109.47018 * 59.99594 * 21 19 17 24 24 H 1.48503 * 109.46984 * 300.00395 * 21 19 17 25 25 H 1.09003 * 109.47018 * 293.81777 * 1 2 3 26 26 H 1.09004 * 109.47398 * 53.81895 * 1 2 3 27 27 H 1.09005 * 109.47171 * 173.82245 * 1 2 3 28 28 H 0.96705 * 113.99820 * 300.00038 * 3 2 1 29 29 H 1.09004 * 109.47106 * 60.00019 * 4 2 1 30 30 H 1.08997 * 109.47143 * 300.00281 * 4 2 1 31 31 H 1.09000 * 109.46940 * 300.00244 * 5 4 2 32 32 H 1.08998 * 109.47052 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.47058 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47657 * 60.00238 * 6 5 4 35 35 H 1.09000 * 109.47478 * 300.00490 * 7 6 5 36 36 H 1.08998 * 109.46896 * 180.02562 * 7 6 5 37 37 H 1.09004 * 110.98933 * 37.80859 * 12 10 8 38 38 H 1.08993 * 111.02282 * 274.00166 * 12 10 8 39 39 H 1.08996 * 110.70232 * 205.96638 * 13 12 10 40 40 H 1.08998 * 110.70091 * 82.73012 * 13 12 10 41 41 H 1.08997 * 109.88695 * 262.87823 * 14 13 12 42 42 H 1.08997 * 110.02239 * 141.76098 * 14 13 12 43 43 H 1.09003 * 109.46601 * 316.29284 * 16 15 14 44 44 H 1.08992 * 109.47031 * 196.29687 * 16 15 14 45 45 H 0.97001 * 119.99917 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6775 -1.7486 1.2496 10 6 1.5304 -0.0001 2.4988 11 1 0.4423 -0.0435 2.5454 12 6 2.1503 -0.6258 3.7731 13 6 2.0512 0.5506 4.7798 14 6 2.3064 1.7884 3.8943 15 7 1.9902 1.4050 2.5061 16 6 0.9717 2.2952 1.9332 17 6 1.6045 3.6132 1.5678 18 1 2.6581 3.7734 1.7432 19 6 0.8385 4.6145 1.0096 20 7 -0.4443 4.4193 0.7955 21 14 1.6230 6.2479 0.5559 22 1 0.5933 7.1482 -0.0219 23 1 2.6987 6.0202 -0.4424 24 1 2.2011 6.8741 1.7721 25 1 -0.3633 0.4150 0.9402 26 1 -0.3634 0.6067 -0.8295 27 1 -0.3634 -1.0217 -0.1106 28 1 1.7209 1.8653 -0.7651 29 1 1.6766 -0.2074 -2.1392 30 1 1.6766 -1.7489 -1.2492 31 1 3.9329 0.3071 -1.2497 32 1 3.9333 -1.2342 -2.1397 33 1 5.1705 -1.4409 -0.0002 34 1 3.7175 -2.4694 0.0000 35 1 3.9334 0.3075 1.2488 36 1 3.9345 -1.2336 2.1389 37 1 3.1894 -0.9081 3.6036 38 1 1.5659 -1.4808 4.1129 39 1 2.8170 0.4636 5.5506 40 1 1.0574 0.5937 5.2254 41 1 3.3521 2.0874 3.9674 42 1 1.6630 2.6105 4.2077 43 1 0.1817 2.4621 2.6655 44 1 0.5481 1.8355 1.0403 45 1 -0.8517 3.5710 1.0307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346711010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -44.057596 kcal Electronic energy + Delta-G solvation = -23306.090879 eV Core-core repulsion = 20323.309813 eV Total energy + Delta-G solvation = -2982.781066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97527 -37.28138 -34.71900 -33.02186 -31.53075 -30.74302 -30.36776 -27.26758 -26.03972 -25.30821 -22.79894 -22.19502 -20.91073 -20.11655 -19.78252 -18.31883 -16.52015 -15.89660 -15.29207 -14.99080 -14.59801 -14.14111 -13.71506 -13.57217 -13.46083 -13.23983 -12.87259 -12.45791 -12.20584 -12.17821 -11.99065 -11.66490 -11.27951 -11.02665 -10.87949 -10.84659 -10.67760 -10.64384 -10.45971 -10.39252 -10.23270 -10.17440 -10.00601 -9.91052 -9.63127 -9.28491 -8.59261 -8.40715 -7.94828 -6.92959 -6.12595 -3.75464 3.53829 3.55259 3.73798 4.66869 4.84823 4.89885 4.97841 5.14768 5.23115 5.29596 5.39593 5.49845 5.58946 5.60203 5.61516 5.76230 5.79415 5.82858 5.89792 5.97997 6.02387 6.08557 6.15073 6.15637 6.22942 6.25489 6.27453 6.39136 6.45996 6.51362 6.58893 6.67924 6.69568 6.79467 6.83882 6.85686 7.13836 7.35971 7.42010 8.19069 8.39373 8.59875 8.70607 8.90623 9.16829 9.90019 11.25386 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.008642 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.529894 B = 3239.058840 C = 4026.970689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 O -0.490 6.490 4 C -0.143 4.143 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.048 4.048 9 H 0.062 0.938 10 C 0.075 3.925 11 H 0.039 0.961 12 C -0.131 4.131 13 C -0.143 4.143 14 C 0.051 3.949 15 N -0.486 5.486 16 C 0.175 3.825 17 C -0.545 4.545 18 H 0.049 0.951 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 1.066 2.934 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.293 1.293 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.359 0.641 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.050 0.950 43 H -0.048 1.048 44 H 0.063 0.937 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -12.624 -0.265 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 O -0.293 6.293 4 C -0.180 4.180 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.067 4.067 9 H 0.080 0.920 10 C -0.034 4.034 11 H 0.057 0.943 12 C -0.168 4.168 13 C -0.182 4.182 14 C -0.078 4.078 15 N -0.210 5.210 16 C 0.050 3.950 17 C -0.584 4.584 18 H 0.067 0.933 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.896 3.104 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.220 1.220 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.205 0.795 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.068 0.932 43 H -0.030 1.030 44 H 0.080 0.920 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.621 -11.242 -0.671 12.587 hybrid contribution -0.824 -1.438 0.647 1.779 sum 4.797 -12.680 -0.024 13.557 Atomic orbital electron populations 1.22684 0.97382 1.00777 1.03229 1.20908 0.91247 0.85452 0.93229 1.87278 1.75848 1.19191 1.46966 1.22247 0.96542 1.00505 0.98748 1.21407 0.95222 1.01513 0.96806 1.21537 0.99517 0.98506 0.95861 1.21493 0.94610 1.02584 0.95449 1.20912 0.96261 0.96266 0.93224 0.91998 1.22496 0.96226 0.91650 0.93037 0.94326 1.22866 1.01494 0.97008 0.95472 1.22819 1.00690 0.96579 0.98097 1.22701 1.00748 0.95452 0.88863 1.63428 1.43165 0.99376 1.14998 1.20439 0.88242 0.92337 0.94027 1.21885 0.96764 0.97897 1.41904 0.93303 1.25620 0.95548 1.02878 0.95588 1.70806 1.11304 1.27148 1.47512 0.83574 0.74869 0.75762 0.76192 1.21380 1.21718 1.22040 0.91046 0.92578 0.93342 0.79492 0.92389 0.92442 0.90931 0.93355 0.92818 0.93304 0.89011 0.93095 0.90476 0.92387 0.91979 0.92549 0.92295 0.93157 1.03022 0.91968 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 7.68 37.16 0.29 -2.75 16 2 C 0.13 2.17 0.56 -90.63 -0.05 2.12 16 3 O -0.49 -9.66 6.03 -35.23 -0.21 -9.87 16 4 C -0.14 -1.98 4.92 -26.73 -0.13 -2.11 16 5 C -0.11 -1.52 5.78 -26.73 -0.15 -1.67 16 6 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 7 C -0.10 -1.59 4.54 -26.73 -0.12 -1.71 16 8 C -0.05 -0.75 1.63 -90.62 -0.15 -0.90 16 9 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 10 C 0.07 1.34 2.05 -66.18 -0.14 1.20 16 11 H 0.04 0.75 6.25 -51.93 -0.32 0.42 16 12 C -0.13 -1.99 6.36 -24.59 -0.16 -2.15 16 13 C -0.14 -2.31 6.94 -24.90 -0.17 -2.49 16 14 C 0.05 1.02 6.54 -2.83 -0.02 1.01 16 15 N -0.49 -10.26 3.21 -224.80 -0.72 -10.99 16 16 C 0.17 4.35 2.14 -4.97 -0.01 4.34 16 17 C -0.55 -15.08 8.07 -34.44 -0.28 -15.36 16 18 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 19 C 0.00 0.13 5.46 -17.82 -0.10 0.04 16 20 N -0.93 -27.88 13.65 55.43 0.76 -27.12 16 21 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H 0.07 1.35 4.67 -51.93 -0.24 1.11 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.36 7.03 9.05 45.56 0.41 7.44 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.71 7.22 -51.93 -0.37 1.33 16 36 H 0.05 0.73 5.99 -51.93 -0.31 0.42 16 37 H 0.08 1.13 5.62 -51.93 -0.29 0.84 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.13 7.36 -51.93 -0.38 0.75 16 43 H -0.05 -1.34 7.62 -51.93 -0.40 -1.73 16 44 H 0.06 1.51 2.67 -51.93 -0.14 1.37 16 45 H 0.26 7.90 7.22 -40.82 -0.29 7.60 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -29.50 319.57 -8.81 -38.31 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.02 Total: 6.37 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.35 Total: -22.14 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.04 Total: -38.11 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.21 Total: -9.87 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.50 -8.81 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.747 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds