Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47053 * 2 1 4 4 C 1.52994 * 109.47248 * 239.99873 * 2 1 3 5 5 C 1.53002 * 109.47418 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46669 * 60.00131 * 5 4 2 7 7 C 1.53001 * 109.47117 * 299.99792 * 6 5 4 8 8 C 1.52996 * 109.47012 * 60.00246 * 7 6 5 9 9 H 1.09006 * 109.47013 * 60.00241 * 8 7 6 10 10 C 1.53000 * 109.47390 * 179.97438 * 8 7 6 11 11 H 1.08994 * 110.42265 * 183.39731 * 10 8 7 12 12 C 1.54911 * 110.37363 * 305.71609 * 10 8 7 13 13 C 1.55147 * 101.65186 * 155.89494 * 12 10 8 14 14 C 1.54323 * 103.02023 * 324.34632 * 13 12 10 15 15 N 1.47449 * 107.23057 * 22.28234 * 14 13 12 16 16 C 1.46905 * 110.99767 * 123.26014 * 15 14 13 17 17 C 1.50702 * 109.47120 * 76.28938 * 16 15 14 18 18 H 1.07999 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47683 * 180.02562 * 21 19 17 23 23 H 1.48510 * 109.47018 * 59.99594 * 21 19 17 24 24 H 1.48503 * 109.46984 * 300.00395 * 21 19 17 25 25 H 1.09003 * 109.47018 * 293.81777 * 1 2 3 26 26 H 1.09004 * 109.47398 * 53.81895 * 1 2 3 27 27 H 1.09005 * 109.47171 * 173.82245 * 1 2 3 28 28 H 0.96705 * 113.99820 * 300.00038 * 3 2 1 29 29 H 1.09004 * 109.47106 * 60.00019 * 4 2 1 30 30 H 1.08997 * 109.47143 * 300.00281 * 4 2 1 31 31 H 1.09000 * 109.46940 * 300.00244 * 5 4 2 32 32 H 1.08998 * 109.47052 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.47058 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47657 * 60.00238 * 6 5 4 35 35 H 1.09000 * 109.47478 * 300.00490 * 7 6 5 36 36 H 1.08998 * 109.46896 * 180.02562 * 7 6 5 37 37 H 1.09004 * 110.98933 * 37.80859 * 12 10 8 38 38 H 1.08993 * 111.02282 * 274.00166 * 12 10 8 39 39 H 1.08996 * 110.70232 * 205.96638 * 13 12 10 40 40 H 1.08998 * 110.70091 * 82.73012 * 13 12 10 41 41 H 1.08997 * 109.88695 * 262.87823 * 14 13 12 42 42 H 1.08997 * 110.02239 * 141.76098 * 14 13 12 43 43 H 1.09003 * 109.46601 * 316.29284 * 16 15 14 44 44 H 1.08992 * 109.47031 * 196.29687 * 16 15 14 45 45 H 0.97001 * 119.99917 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6775 -1.7486 1.2496 10 6 1.5304 -0.0001 2.4988 11 1 0.4423 -0.0435 2.5454 12 6 2.1503 -0.6258 3.7731 13 6 2.0512 0.5506 4.7798 14 6 2.3064 1.7884 3.8943 15 7 1.9902 1.4050 2.5061 16 6 0.9717 2.2952 1.9332 17 6 1.6045 3.6132 1.5678 18 1 2.6581 3.7734 1.7432 19 6 0.8385 4.6145 1.0096 20 7 -0.4443 4.4193 0.7955 21 14 1.6230 6.2479 0.5559 22 1 0.5933 7.1482 -0.0219 23 1 2.6987 6.0202 -0.4424 24 1 2.2011 6.8741 1.7721 25 1 -0.3633 0.4150 0.9402 26 1 -0.3634 0.6067 -0.8295 27 1 -0.3634 -1.0217 -0.1106 28 1 1.7209 1.8653 -0.7651 29 1 1.6766 -0.2074 -2.1392 30 1 1.6766 -1.7489 -1.2492 31 1 3.9329 0.3071 -1.2497 32 1 3.9333 -1.2342 -2.1397 33 1 5.1705 -1.4409 -0.0002 34 1 3.7175 -2.4694 0.0000 35 1 3.9334 0.3075 1.2488 36 1 3.9345 -1.2336 2.1389 37 1 3.1894 -0.9081 3.6036 38 1 1.5659 -1.4808 4.1129 39 1 2.8170 0.4636 5.5506 40 1 1.0574 0.5937 5.2254 41 1 3.3521 2.0874 3.9674 42 1 1.6630 2.6105 4.2077 43 1 0.1817 2.4621 2.6655 44 1 0.5481 1.8355 1.0403 45 1 -0.8517 3.5710 1.0307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346711010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -62.287173 kcal Electronic energy + Delta-G solvation = -23306.881373 eV Core-core repulsion = 20323.309813 eV Total energy + Delta-G solvation = -2983.571560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35608 -38.72423 -36.17599 -34.99233 -32.86440 -32.31761 -31.82449 -28.60557 -27.69647 -26.98783 -24.34290 -23.88006 -22.27015 -21.53789 -21.05510 -19.74573 -18.65289 -17.27533 -16.71365 -16.50118 -15.97321 -15.58374 -15.43994 -15.04437 -14.80541 -14.73120 -14.53604 -14.06978 -13.68270 -13.56583 -13.35659 -12.99450 -12.80579 -12.64818 -12.50607 -12.43296 -12.19394 -12.04226 -11.94261 -11.85372 -11.68956 -11.65640 -11.52041 -11.23755 -11.05983 -10.56728 -10.50343 -10.40911 -9.80663 -8.72906 -8.41189 -6.07052 1.54638 1.62408 1.81388 2.64371 3.33124 3.42080 3.56154 3.70094 3.86031 3.96242 4.04454 4.13509 4.18257 4.26022 4.35264 4.49477 4.50373 4.60932 4.65438 4.72720 4.80133 4.82161 4.89066 4.91412 4.97976 4.99458 5.02599 5.07192 5.14518 5.19516 5.20755 5.31596 5.38156 5.45693 5.49963 5.51828 5.55919 5.61728 5.89054 6.14843 6.31856 6.67193 6.72377 7.01736 7.20888 7.66304 8.93601 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.008642 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.529894 B = 3239.058840 C = 4026.970689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.126 3.874 3 O -0.513 6.513 4 C -0.135 4.135 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.098 4.098 8 C -0.046 4.046 9 H 0.090 0.910 10 C 0.067 3.933 11 H 0.020 0.980 12 C -0.119 4.119 13 C -0.134 4.134 14 C 0.044 3.956 15 N -0.490 5.490 16 C 0.191 3.809 17 C -0.544 4.544 18 H 0.032 0.968 19 C -0.043 4.043 20 N -0.950 5.950 21 Si 1.112 2.888 22 H -0.289 1.289 23 H -0.272 1.272 24 H -0.284 1.284 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.353 0.647 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.013 0.987 43 H -0.095 1.095 44 H 0.072 0.928 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -15.127 -0.554 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 O -0.316 6.316 4 C -0.172 4.172 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.135 4.135 8 C -0.065 4.065 9 H 0.108 0.892 10 C -0.041 4.041 11 H 0.038 0.962 12 C -0.157 4.157 13 C -0.172 4.172 14 C -0.085 4.085 15 N -0.214 5.214 16 C 0.065 3.935 17 C -0.583 4.583 18 H 0.051 0.949 19 C -0.238 4.238 20 N -0.590 5.590 21 Si 0.936 3.064 22 H -0.215 1.215 23 H -0.198 1.198 24 H -0.210 1.210 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.198 0.802 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.031 0.969 43 H -0.078 1.078 44 H 0.090 0.910 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.107 -13.779 -0.945 15.533 hybrid contribution -1.285 -0.690 0.777 1.653 sum 5.822 -14.469 -0.168 15.597 Atomic orbital electron populations 1.22620 0.97877 1.02043 1.01021 1.21152 0.90889 0.84284 0.95155 1.87240 1.76163 1.21270 1.46956 1.22155 0.96841 1.01180 0.97070 1.21388 0.94798 1.00415 0.98187 1.21511 1.00148 0.99111 0.94129 1.21392 0.93848 1.00770 0.97494 1.20984 0.96864 0.97037 0.91586 0.89231 1.22668 0.95544 0.89953 0.95974 0.96151 1.22863 1.02527 0.97124 0.93189 1.22757 1.01572 0.94649 0.98247 1.22721 0.99666 0.96563 0.89510 1.63363 1.41634 1.00781 1.15573 1.20213 0.87704 0.92410 0.93176 1.22060 0.95808 0.99343 1.41124 0.94948 1.26931 0.95355 1.06156 0.95354 1.70934 1.12255 1.26597 1.49212 0.82965 0.74548 0.72176 0.76697 1.21468 1.19763 1.20986 0.94192 0.93575 0.90445 0.80191 0.92413 0.90228 0.93531 0.91207 0.91860 0.91034 0.92956 0.91577 0.89093 0.89522 0.89120 0.92720 0.92420 0.96876 1.07789 0.91032 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 7.68 71.98 0.55 -5.33 16 2 C 0.13 4.02 0.56 -10.80 -0.01 4.01 16 3 O -0.51 -20.90 6.03 -148.98 -0.90 -21.79 16 4 C -0.13 -3.43 4.92 30.59 0.15 -3.28 16 5 C -0.11 -2.72 5.78 30.60 0.18 -2.55 16 6 C -0.11 -2.55 5.92 30.60 0.18 -2.37 16 7 C -0.10 -2.75 4.54 30.59 0.14 -2.61 16 8 C -0.05 -1.36 1.63 -10.80 -0.02 -1.38 16 9 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 10 C 0.07 2.36 2.05 45.39 0.09 2.45 16 11 H 0.02 0.80 6.25 -2.39 -0.01 0.78 16 12 C -0.12 -3.32 6.36 31.98 0.20 -3.11 16 13 C -0.13 -4.14 6.94 31.78 0.22 -3.92 16 14 C 0.04 1.82 6.54 86.65 0.57 2.39 16 15 N -0.49 -21.36 3.21 -865.15 -2.78 -24.14 16 16 C 0.19 10.07 2.14 85.56 0.18 10.25 16 17 C -0.54 -31.48 8.07 25.60 0.21 -31.27 16 18 H 0.03 1.94 7.81 -2.91 -0.02 1.92 16 19 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 20 N -0.95 -59.17 13.65 21.45 0.29 -58.88 16 21 Si 1.11 52.74 29.90 68.60 2.05 54.79 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H 0.04 1.56 4.67 -2.39 -0.01 1.55 16 26 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.35 14.58 9.05 -74.05 -0.67 13.91 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.91 7.22 -2.39 -0.02 1.89 16 36 H 0.07 1.65 5.99 -2.39 -0.01 1.63 16 37 H 0.09 2.31 5.62 -2.38 -0.01 2.30 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.01 0.61 7.36 -2.39 -0.02 0.60 16 43 H -0.09 -5.79 7.62 -2.39 -0.02 -5.81 16 44 H 0.07 3.68 2.67 -2.39 -0.01 3.67 16 45 H 0.25 15.81 7.22 -92.71 -0.67 15.14 16 Total: -1.00 -67.23 319.57 2.18 -65.06 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.39 Total: 23.71 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.11 Total: -38.74 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.48 Total: -83.02 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.90 Total: -21.79 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -67.23 2.18 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.769 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds