Wall clock time and date at job start Mon Mar 30 2020 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46953 * 2 1 4 4 C 1.52998 * 109.47005 * 239.99795 * 2 1 3 5 5 C 1.53000 * 109.47416 * 299.99792 * 4 2 1 6 6 C 1.52998 * 109.46988 * 300.00276 * 5 4 2 7 7 C 1.53000 * 109.47262 * 60.00024 * 6 5 4 8 8 C 1.52999 * 109.46841 * 119.99782 * 2 1 3 9 9 H 1.09004 * 109.46840 * 180.02562 * 8 2 1 10 10 C 1.52998 * 109.47332 * 299.99813 * 8 2 1 11 11 H 1.08997 * 110.72406 * 64.69321 * 10 8 2 12 12 C 1.54937 * 110.67052 * 301.59480 * 10 8 2 13 13 C 1.54596 * 102.92205 * 204.15349 * 12 10 8 14 14 C 1.53989 * 105.14186 * 21.95278 * 13 12 10 15 15 N 1.47904 * 107.06056 * 1.22947 * 14 13 12 16 16 C 1.46896 * 111.00450 * 214.15708 * 15 14 13 17 17 C 1.50698 * 109.47319 * 78.06874 * 16 15 14 18 18 H 1.08004 * 120.00306 * 354.02796 * 17 16 15 19 19 C 1.37883 * 120.00373 * 174.02180 * 17 16 15 20 20 N 1.31519 * 119.99315 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47505 * 60.00093 * 21 19 17 23 23 H 1.48506 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47000 * 299.99756 * 21 19 17 25 25 H 1.08994 * 109.47030 * 300.00249 * 1 2 3 26 26 H 1.08993 * 109.46839 * 60.00214 * 1 2 3 27 27 H 1.09005 * 109.47013 * 179.97438 * 1 2 3 28 28 H 0.96699 * 113.99697 * 300.00162 * 3 2 1 29 29 H 1.09003 * 109.47146 * 60.00301 * 4 2 1 30 30 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.46952 * 60.00174 * 5 4 2 32 32 H 1.08994 * 109.47168 * 179.97438 * 5 4 2 33 33 H 1.09005 * 109.46848 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47377 * 299.99560 * 6 5 4 35 35 H 1.09002 * 109.47049 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47240 * 59.99758 * 7 6 5 37 37 H 1.08994 * 110.72508 * 85.79181 * 12 10 8 38 38 H 1.09007 * 110.87325 * 322.57729 * 12 10 8 39 39 H 1.09000 * 110.30325 * 263.04144 * 13 12 10 40 40 H 1.08996 * 110.31099 * 140.87481 * 13 12 10 41 41 H 1.09000 * 109.91856 * 241.87913 * 14 13 12 42 42 H 1.08998 * 109.91814 * 120.57994 * 14 13 12 43 43 H 1.08993 * 109.47630 * 198.07475 * 16 15 14 44 44 H 1.09002 * 109.47008 * 318.07648 * 16 15 14 45 45 H 0.97001 * 119.99574 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7208 1.2495 10 6 1.5300 0.0001 2.4985 11 1 0.4435 -0.0596 2.5618 12 6 1.9979 1.4771 2.5065 13 6 1.9672 1.8413 4.0087 14 6 2.0531 0.4948 4.7509 15 7 2.1581 -0.5621 3.7216 16 6 1.4694 -1.7863 4.1518 17 6 -0.0164 -1.6192 3.9640 18 1 -0.4181 -0.6648 3.6570 19 6 -0.8633 -2.6848 4.1841 20 7 -0.3742 -3.8469 4.5583 21 14 -2.7050 -2.4780 3.9506 22 1 -2.9847 -2.0814 2.5472 23 1 -3.3891 -3.7620 4.2484 24 1 -3.2056 -1.4258 4.8715 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 1.8653 -0.7650 29 1 1.6767 -0.2074 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 0.4401 -2.1638 -1.2492 32 1 1.8930 -2.6775 -2.1393 33 1 1.6764 -3.9126 0.0003 34 1 3.1300 -2.8850 0.0001 35 1 1.8938 -2.6773 2.1393 36 1 0.4400 -2.1637 1.2493 37 1 1.3065 2.1038 1.9434 38 1 3.0089 1.5664 2.1086 39 1 1.0355 2.3505 4.2554 40 1 2.8212 2.4689 4.2634 41 1 1.1547 0.3425 5.3491 42 1 2.9355 0.4790 5.3905 43 1 1.8187 -2.6286 3.5547 44 1 1.6839 -1.9731 5.2040 45 1 -0.9700 -4.5965 4.7135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346711011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:06 Heat of formation + Delta-G solvation = -53.175701 kcal Electronic energy + Delta-G solvation = -23161.813854 eV Core-core repulsion = 20178.637398 eV Total energy + Delta-G solvation = -2983.176457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94969 -37.46940 -35.22197 -33.03579 -31.29546 -30.76656 -30.00077 -27.37954 -26.27411 -25.72498 -23.00912 -21.79366 -21.55645 -19.78166 -19.15990 -18.24799 -16.74685 -16.13068 -15.59175 -14.89364 -14.49118 -14.36944 -14.06373 -13.58761 -13.40194 -12.99701 -12.68476 -12.60952 -12.17302 -12.06940 -11.76710 -11.66702 -11.27676 -11.13522 -11.05789 -10.87341 -10.82614 -10.58748 -10.53204 -10.36010 -10.20477 -9.96060 -9.85814 -9.76664 -9.46610 -9.31206 -9.22424 -8.93253 -8.32373 -7.05648 -6.00883 -4.07761 3.26531 3.32523 3.34652 4.40348 4.52257 4.94580 4.99412 5.21554 5.30018 5.42254 5.50588 5.55809 5.62323 5.64612 5.68551 5.84949 5.89915 5.97886 6.00081 6.11564 6.17415 6.23153 6.33284 6.35933 6.42448 6.50105 6.56075 6.58279 6.62178 6.72546 6.77832 6.84490 6.89067 6.96781 7.04112 7.17278 7.32595 7.36305 7.70441 7.97757 8.03471 8.14269 8.34163 8.38508 9.02699 9.56966 11.04006 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.009424 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.314415 B = 2970.313816 C = 3794.938975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.137 3.863 3 O -0.551 6.551 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.041 4.041 9 H 0.067 0.933 10 C 0.071 3.929 11 H 0.081 0.919 12 C -0.100 4.100 13 C -0.136 4.136 14 C 0.042 3.958 15 N -0.521 5.521 16 C 0.170 3.830 17 C -0.540 4.540 18 H 0.061 0.939 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.278 1.278 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.359 0.641 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.018 0.982 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 6.955 -10.118 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.096 3.904 3 O -0.356 6.356 4 C -0.176 4.176 5 C -0.155 4.155 6 C -0.160 4.160 7 C -0.157 4.157 8 C -0.060 4.060 9 H 0.085 0.915 10 C -0.038 4.038 11 H 0.099 0.901 12 C -0.138 4.138 13 C -0.174 4.174 14 C -0.087 4.087 15 N -0.245 5.245 16 C 0.044 3.956 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.134 4.134 20 N -0.527 5.527 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.204 1.204 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.205 0.795 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.032 6.396 -9.569 12.196 hybrid contribution -2.329 0.327 -0.441 2.393 sum 1.703 6.723 -10.011 12.179 Atomic orbital electron populations 1.22596 0.96272 1.03284 1.01549 1.21192 0.92434 0.81600 0.95162 1.86773 1.77274 1.23526 1.48019 1.22176 1.01251 0.96640 0.97533 1.21560 1.00920 0.94910 0.98146 1.21625 1.00200 0.99027 0.95131 1.21964 1.01833 0.93988 0.97957 1.20793 0.99802 0.94174 0.91276 0.91497 1.22840 0.99283 0.91594 0.90036 0.90137 1.22419 1.01460 0.96427 0.93504 1.22465 1.00182 0.97430 0.97299 1.22651 0.99916 0.90818 0.95330 1.65021 1.52094 1.04727 1.02651 1.20124 0.91474 0.88163 0.95841 1.21673 0.93008 0.96717 1.46502 0.92149 1.24901 0.98113 0.95304 0.95108 1.69932 1.34996 1.01400 1.46386 0.86855 0.86337 0.77359 0.78696 1.20201 1.21281 1.20408 0.91482 0.93658 0.90823 0.79474 0.92696 0.91636 0.91834 0.92795 0.92382 0.92676 0.88420 0.91096 0.91902 0.91678 0.92883 0.92703 0.93543 0.92523 0.93201 0.96422 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 7.79 37.16 0.29 -2.41 16 2 C 0.14 2.03 0.81 -90.62 -0.07 1.95 16 3 O -0.55 -7.66 9.33 -35.23 -0.33 -7.99 16 4 C -0.14 -1.80 5.07 -26.73 -0.14 -1.94 16 5 C -0.12 -1.59 5.65 -26.73 -0.15 -1.74 16 6 C -0.12 -1.92 5.92 -26.73 -0.16 -2.08 16 7 C -0.12 -2.29 3.82 -26.73 -0.10 -2.40 16 8 C -0.04 -0.74 1.61 -90.62 -0.15 -0.89 16 9 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 10 C 0.07 1.40 1.21 -65.78 -0.08 1.32 16 11 H 0.08 1.79 3.62 -51.93 -0.19 1.61 16 12 C -0.10 -1.77 4.67 -24.87 -0.12 -1.89 16 13 C -0.14 -2.36 6.93 -25.38 -0.18 -2.54 16 14 C 0.04 0.84 6.44 -2.76 -0.02 0.82 16 15 N -0.52 -11.38 5.22 -224.06 -1.17 -12.55 16 16 C 0.17 4.25 4.44 -4.98 -0.02 4.23 16 17 C -0.54 -14.10 6.68 -34.44 -0.23 -14.33 16 18 H 0.06 1.59 5.62 -52.48 -0.29 1.29 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 21 Si 0.88 20.89 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.07 1.12 6.55 -51.93 -0.34 0.78 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.19 4.81 -51.93 -0.25 0.94 16 28 H 0.36 3.57 9.05 45.56 0.41 3.98 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 2.17 4.54 -51.93 -0.24 1.94 16 36 H 0.07 1.48 6.17 -51.93 -0.32 1.16 16 37 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16 38 H 0.06 1.18 7.55 -51.92 -0.39 0.79 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.02 7.38 -51.93 -0.38 0.63 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.33 5.12 -51.93 -0.27 1.06 16 44 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -27.66 316.85 -8.96 -36.63 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.74 Total: 7.89 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.22 Total: -20.14 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.43 Total: -37.03 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.33 Total: -7.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.66 -8.96 -36.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.549 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds