Wall clock time and date at job start Mon Mar 30 2020 07:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46953 * 2 1 4 4 C 1.52998 * 109.47005 * 239.99795 * 2 1 3 5 5 C 1.53000 * 109.47416 * 299.99792 * 4 2 1 6 6 C 1.52998 * 109.46988 * 300.00276 * 5 4 2 7 7 C 1.53000 * 109.47262 * 60.00024 * 6 5 4 8 8 C 1.52999 * 109.46841 * 119.99782 * 2 1 3 9 9 H 1.09004 * 109.46840 * 180.02562 * 8 2 1 10 10 C 1.52998 * 109.47332 * 299.99813 * 8 2 1 11 11 H 1.08997 * 110.72406 * 64.69321 * 10 8 2 12 12 C 1.54937 * 110.67052 * 301.59480 * 10 8 2 13 13 C 1.54596 * 102.92205 * 204.15349 * 12 10 8 14 14 C 1.53989 * 105.14186 * 21.95278 * 13 12 10 15 15 N 1.47904 * 107.06056 * 1.22947 * 14 13 12 16 16 C 1.46896 * 111.00450 * 214.15708 * 15 14 13 17 17 C 1.50698 * 109.47319 * 78.06874 * 16 15 14 18 18 H 1.08004 * 120.00306 * 354.02796 * 17 16 15 19 19 C 1.37883 * 120.00373 * 174.02180 * 17 16 15 20 20 N 1.31519 * 119.99315 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47505 * 60.00093 * 21 19 17 23 23 H 1.48506 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47000 * 299.99756 * 21 19 17 25 25 H 1.08994 * 109.47030 * 300.00249 * 1 2 3 26 26 H 1.08993 * 109.46839 * 60.00214 * 1 2 3 27 27 H 1.09005 * 109.47013 * 179.97438 * 1 2 3 28 28 H 0.96699 * 113.99697 * 300.00162 * 3 2 1 29 29 H 1.09003 * 109.47146 * 60.00301 * 4 2 1 30 30 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.46952 * 60.00174 * 5 4 2 32 32 H 1.08994 * 109.47168 * 179.97438 * 5 4 2 33 33 H 1.09005 * 109.46848 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47377 * 299.99560 * 6 5 4 35 35 H 1.09002 * 109.47049 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47240 * 59.99758 * 7 6 5 37 37 H 1.08994 * 110.72508 * 85.79181 * 12 10 8 38 38 H 1.09007 * 110.87325 * 322.57729 * 12 10 8 39 39 H 1.09000 * 110.30325 * 263.04144 * 13 12 10 40 40 H 1.08996 * 110.31099 * 140.87481 * 13 12 10 41 41 H 1.09000 * 109.91856 * 241.87913 * 14 13 12 42 42 H 1.08998 * 109.91814 * 120.57994 * 14 13 12 43 43 H 1.08993 * 109.47630 * 198.07475 * 16 15 14 44 44 H 1.09002 * 109.47008 * 318.07648 * 16 15 14 45 45 H 0.97001 * 119.99574 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2493 9 1 3.1300 -0.7208 1.2495 10 6 1.5300 0.0001 2.4985 11 1 0.4435 -0.0596 2.5618 12 6 1.9979 1.4771 2.5065 13 6 1.9672 1.8413 4.0087 14 6 2.0531 0.4948 4.7509 15 7 2.1581 -0.5621 3.7216 16 6 1.4694 -1.7863 4.1518 17 6 -0.0164 -1.6192 3.9640 18 1 -0.4181 -0.6648 3.6570 19 6 -0.8633 -2.6848 4.1841 20 7 -0.3742 -3.8469 4.5583 21 14 -2.7050 -2.4780 3.9506 22 1 -2.9847 -2.0814 2.5472 23 1 -3.3891 -3.7620 4.2484 24 1 -3.2056 -1.4258 4.8715 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 1.8653 -0.7650 29 1 1.6767 -0.2074 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 0.4401 -2.1638 -1.2492 32 1 1.8930 -2.6775 -2.1393 33 1 1.6764 -3.9126 0.0003 34 1 3.1300 -2.8850 0.0001 35 1 1.8938 -2.6773 2.1393 36 1 0.4400 -2.1637 1.2493 37 1 1.3065 2.1038 1.9434 38 1 3.0089 1.5664 2.1086 39 1 1.0355 2.3505 4.2554 40 1 2.8212 2.4689 4.2634 41 1 1.1547 0.3425 5.3491 42 1 2.9355 0.4790 5.3905 43 1 1.8187 -2.6286 3.5547 44 1 1.6839 -1.9731 5.2040 45 1 -0.9700 -4.5965 4.7135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346711011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:05 Heat of formation + Delta-G solvation = -71.589637 kcal Electronic energy + Delta-G solvation = -23162.612343 eV Core-core repulsion = 20178.637398 eV Total energy + Delta-G solvation = -2983.974945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33186 -38.98124 -36.41136 -35.02597 -32.69104 -32.50540 -31.26723 -28.73989 -28.14656 -27.15538 -24.84116 -23.19833 -22.90637 -21.29238 -20.83354 -19.58281 -18.42442 -17.54618 -17.26505 -16.51196 -15.96145 -15.86187 -15.48796 -15.07561 -14.58837 -14.51539 -14.46124 -14.06996 -13.83760 -13.56643 -13.20252 -12.92961 -12.87800 -12.71585 -12.58717 -12.45784 -12.33997 -12.04734 -12.02476 -11.87468 -11.75250 -11.64965 -11.49934 -11.24159 -11.04465 -10.85746 -10.70281 -10.43205 -10.23602 -8.91427 -8.09570 -6.24757 1.35588 1.36369 1.43506 2.38625 3.15139 3.36858 3.53547 3.80009 3.99767 4.01943 4.12722 4.22204 4.31704 4.36782 4.42000 4.47441 4.52932 4.69126 4.75501 4.80630 4.85514 4.91066 4.97976 5.04142 5.05515 5.14158 5.16484 5.18769 5.26221 5.28908 5.33853 5.36769 5.44440 5.45489 5.50596 5.55382 5.61312 5.73497 5.79888 5.99345 6.15216 6.40266 6.54323 6.95546 7.12567 7.43551 8.93105 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.009424 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.314415 B = 2970.313816 C = 3794.938975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 O -0.559 6.559 4 C -0.132 4.132 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.038 4.038 9 H 0.055 0.945 10 C 0.071 3.929 11 H 0.056 0.944 12 C -0.087 4.087 13 C -0.128 4.128 14 C 0.036 3.964 15 N -0.528 5.528 16 C 0.186 3.814 17 C -0.535 4.535 18 H 0.059 0.941 19 C 0.020 3.980 20 N -0.923 5.923 21 Si 0.939 3.061 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.382 0.618 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.032 0.968 44 H -0.017 1.017 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 9.001 -12.618 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.105 3.895 3 O -0.367 6.367 4 C -0.169 4.169 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.057 4.057 9 H 0.073 0.927 10 C -0.037 4.037 11 H 0.073 0.927 12 C -0.125 4.125 13 C -0.166 4.166 14 C -0.092 4.092 15 N -0.252 5.252 16 C 0.059 3.941 17 C -0.573 4.573 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.563 5.563 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.231 0.769 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.001 0.999 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.769 8.471 -12.088 15.235 hybrid contribution -2.190 -0.296 0.382 2.242 sum 1.579 8.175 -11.707 14.366 Atomic orbital electron populations 1.22555 0.96376 1.02407 1.02066 1.20930 0.92113 0.82276 0.94181 1.86700 1.77291 1.22992 1.49701 1.22128 1.01270 0.96017 0.97515 1.21536 1.00809 0.95379 0.97395 1.21586 1.00455 0.98756 0.94947 1.21727 1.00040 0.95109 0.97982 1.20722 0.98847 0.93720 0.92451 0.92696 1.22858 0.97661 0.93447 0.89770 0.92681 1.22331 1.01676 0.94639 0.93871 1.22451 1.01813 0.95850 0.96531 1.22728 0.99113 0.92149 0.95226 1.65009 1.51735 1.04352 1.04060 1.19788 0.91517 0.89467 0.93280 1.21792 0.93478 0.96514 1.45545 0.92295 1.25626 1.02332 0.95011 0.94979 1.70060 1.36419 1.02150 1.47684 0.85893 0.81255 0.77275 0.79071 1.19056 1.21065 1.20061 0.93635 0.90397 0.92433 0.76901 0.89526 0.91574 0.92032 0.90313 0.92864 0.92150 0.92609 0.93532 0.90458 0.91524 0.92036 0.90145 0.96076 0.91684 0.95030 0.99902 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 7.79 71.98 0.56 -4.38 16 2 C 0.15 3.98 0.81 -10.79 -0.01 3.97 16 3 O -0.56 -13.55 9.33 -148.98 -1.39 -14.94 16 4 C -0.13 -2.95 5.07 30.59 0.16 -2.80 16 5 C -0.11 -2.78 5.65 30.59 0.17 -2.61 16 6 C -0.12 -3.74 5.92 30.59 0.18 -3.56 16 7 C -0.11 -4.39 3.82 30.59 0.12 -4.27 16 8 C -0.04 -1.37 1.61 -10.79 -0.02 -1.39 16 9 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 10 C 0.07 2.81 1.21 45.26 0.05 2.86 16 11 H 0.06 2.51 3.62 -2.39 -0.01 2.50 16 12 C -0.09 -2.93 4.67 31.80 0.15 -2.78 16 13 C -0.13 -4.25 6.93 31.47 0.22 -4.03 16 14 C 0.04 1.49 6.44 86.44 0.56 2.04 16 15 N -0.53 -23.84 5.22 -862.80 -4.51 -28.35 16 16 C 0.19 9.90 4.44 85.56 0.38 10.28 16 17 C -0.53 -29.06 6.68 25.60 0.17 -28.89 16 18 H 0.06 3.20 5.62 -2.91 -0.02 3.18 16 19 C 0.02 1.10 5.46 84.66 0.46 1.57 16 20 N -0.92 -54.49 13.29 21.45 0.28 -54.20 16 21 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H 0.04 1.46 6.55 -2.39 -0.02 1.44 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.79 4.81 -2.38 -0.01 1.78 16 28 H 0.38 5.77 9.05 -74.06 -0.67 5.10 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.55 6.43 -2.39 -0.02 1.53 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.66 4.54 -2.39 -0.01 2.65 16 36 H 0.05 2.02 6.17 -2.39 -0.01 2.01 16 37 H 0.08 2.40 7.12 -2.39 -0.02 2.38 16 38 H 0.07 2.24 7.55 -2.38 -0.02 2.23 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.03 1.82 5.12 -2.39 -0.01 1.81 16 44 H -0.02 -1.01 7.97 -2.39 -0.02 -1.03 16 45 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -62.28 316.85 -0.13 -62.40 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.31 Total: 23.45 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.15 Total: -33.97 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.22 Total: -82.55 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.39 Total: -14.94 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.28 -0.13 -62.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346711011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.188 kcal (2) G-P(sol) polarization free energy of solvation -62.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds