Wall clock time and date at job start Mon Mar 30 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48500 * 109.46856 * 275.42469 * 3 2 1 5 5 H 1.48493 * 109.47064 * 35.42300 * 3 2 1 6 6 H 1.48496 * 109.46935 * 155.42338 * 3 2 1 7 7 C 1.38814 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 34.14338 * 7 2 1 9 9 N 1.36931 * 119.99895 * 214.13863 * 7 2 1 10 10 C 1.46500 * 120.00322 * 36.21542 * 9 7 2 11 11 C 1.53004 * 109.47034 * 95.84160 * 10 9 7 12 12 C 1.52998 * 109.47069 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.48526 * 304.98041 * 12 11 10 14 14 C 1.53090 * 109.49007 * 184.95206 * 12 11 10 15 15 C 1.53183 * 109.16357 * 182.40302 * 14 12 11 16 16 C 1.53181 * 109.03550 * 56.98028 * 15 14 12 17 17 C 1.53097 * 109.16025 * 303.01697 * 16 15 14 18 18 O 1.42902 * 109.47932 * 65.00069 * 12 11 10 19 19 C 1.46510 * 120.00041 * 216.21344 * 9 7 2 20 20 C 1.54271 * 110.02860 * 57.56278 * 19 9 7 21 21 C 1.54968 * 104.15492 * 217.13510 * 20 19 9 22 22 C 1.54889 * 102.77805 * 37.89118 * 21 20 19 23 23 C 1.53868 * 110.03045 * 300.34527 * 19 9 7 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47142 * 335.84481 * 10 9 7 26 26 H 1.09003 * 109.47312 * 215.84595 * 10 9 7 27 27 H 1.09007 * 109.46960 * 60.00801 * 11 10 9 28 28 H 1.08989 * 109.47501 * 300.00388 * 11 10 9 29 29 H 1.09000 * 109.51894 * 302.30582 * 14 12 11 30 30 H 1.08996 * 109.52767 * 62.50076 * 14 12 11 31 31 H 1.08995 * 109.54410 * 176.84039 * 15 14 12 32 32 H 1.08999 * 109.54156 * 297.02761 * 15 14 12 33 33 H 1.08995 * 109.52147 * 183.11571 * 16 15 14 34 34 H 1.08995 * 109.52255 * 62.92286 * 16 15 14 35 35 H 1.08996 * 109.48562 * 297.62480 * 17 16 15 36 36 H 1.08998 * 109.47797 * 177.59331 * 17 16 15 37 37 H 1.09003 * 110.01364 * 178.95022 * 19 9 7 38 38 H 1.09000 * 110.48773 * 335.78279 * 20 19 9 39 39 H 1.08998 * 110.48518 * 98.42714 * 20 19 9 40 40 H 1.08998 * 110.71985 * 279.56951 * 21 20 19 41 41 H 1.09002 * 110.91632 * 156.29779 * 21 20 19 42 42 H 1.09000 * 110.48394 * 203.40721 * 22 21 20 43 43 H 1.08997 * 110.48608 * 80.75899 * 22 21 20 44 44 H 1.09002 * 110.03242 * 238.56508 * 23 19 9 45 45 H 1.08996 * 110.03672 * 359.95157 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3831 2.1125 -1.3938 5 1 1.5097 2.6168 0.8115 6 1 3.6003 1.4097 0.5823 7 6 2.0102 -1.2022 0.0005 8 1 1.6098 -2.0571 -0.5240 9 7 3.2025 -1.3041 0.6661 10 6 3.3998 -0.5890 1.9294 11 6 3.1052 -1.5300 3.0994 12 6 3.3105 -0.7830 4.4188 13 1 4.3146 -0.3594 4.4443 14 6 3.1366 -1.7551 5.5885 15 6 3.2842 -0.9880 6.9062 16 6 2.2596 0.1503 6.9390 17 6 2.4675 1.0489 5.7170 18 8 2.3475 0.2673 4.5267 19 6 4.2811 -2.1283 0.1148 20 6 4.6446 -1.6430 -1.3037 21 6 4.9559 -2.9464 -2.0820 22 6 3.9043 -3.9377 -1.5246 23 6 3.8110 -3.5867 -0.0253 24 1 -0.4850 0.8400 0.0004 25 1 2.7251 0.2660 1.9721 26 1 4.4310 -0.2417 1.9932 27 1 3.7799 -2.3850 3.0568 28 1 2.0741 -1.8773 3.0356 29 1 2.1470 -2.2095 5.5405 30 1 3.8985 -2.5326 5.5325 31 1 3.1060 -1.6630 7.7431 32 1 4.2909 -0.5763 6.9775 33 1 2.3944 0.7355 7.8486 34 1 1.2524 -0.2656 6.9182 35 1 3.4605 1.4964 5.7595 36 1 1.7138 1.8362 5.7124 37 1 5.1566 -2.0787 0.7622 38 1 3.8014 -1.1209 -1.7561 39 1 5.5222 -0.9973 -1.2728 40 1 5.9664 -3.2929 -1.8654 41 1 4.8203 -2.8015 -3.1538 42 1 4.2423 -4.9657 -1.6554 43 1 2.9414 -3.7866 -2.0125 44 1 4.4589 -4.2451 0.5533 45 1 2.7807 -3.6815 0.3176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347429839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:24 Heat of formation + Delta-G solvation = -49.604014 kcal Electronic energy + Delta-G solvation = -21857.916532 eV Core-core repulsion = 18874.894955 eV Total energy + Delta-G solvation = -2983.021577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.17792 -37.80600 -34.76867 -33.41731 -32.48163 -31.17033 -28.56424 -27.88065 -26.69918 -24.84823 -23.61015 -22.17180 -20.73729 -20.07513 -19.90733 -18.91058 -16.31299 -16.10897 -15.72538 -15.26890 -14.96692 -14.47757 -14.38321 -14.10269 -13.49457 -13.39441 -12.92012 -12.71504 -12.51323 -12.34586 -12.04201 -11.79148 -11.44252 -11.10809 -11.06220 -10.84667 -10.66968 -10.53546 -10.43648 -10.40936 -10.31489 -10.14561 -9.94094 -9.92067 -9.75687 -9.54419 -9.29197 -9.09555 -8.27160 -6.64870 -5.94770 -3.19616 3.49112 3.60378 3.65452 4.13896 4.69105 4.80993 4.88200 4.96529 5.05663 5.19526 5.31205 5.37585 5.42370 5.48655 5.56771 5.61697 5.70323 5.77176 5.87315 5.96074 5.96999 6.05337 6.10024 6.11803 6.24932 6.26139 6.28217 6.34210 6.41672 6.48994 6.53039 6.56311 6.59690 6.65911 6.80177 6.97423 7.05312 7.16479 7.25851 7.26158 7.66942 8.17122 8.53753 9.16838 9.88673 10.32138 11.21247 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.006624 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.329212 B = 4226.224827 C = 5211.271556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.049 3.951 3 Si 0.845 3.155 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.268 4.268 8 H 0.076 0.924 9 N -0.597 5.597 10 C 0.155 3.845 11 C -0.127 4.127 12 C 0.092 3.908 13 H 0.048 0.952 14 C -0.149 4.149 15 C -0.121 4.121 16 C -0.155 4.155 17 C 0.058 3.942 18 O -0.366 6.366 19 C 0.171 3.829 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -3.001 9.424 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.152 4.152 3 Si 0.672 3.328 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.396 4.396 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.029 3.971 11 C -0.167 4.167 12 C 0.033 3.967 13 H 0.066 0.934 14 C -0.187 4.187 15 C -0.159 4.159 16 C -0.193 4.193 17 C -0.019 4.019 18 O -0.285 6.285 19 C 0.064 3.936 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.173 4.173 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.661 -2.875 9.281 13.016 hybrid contribution 0.608 1.023 0.252 1.216 sum 9.269 -1.852 9.533 13.425 Atomic orbital electron populations 1.70066 1.06329 1.26707 1.48887 1.25402 0.94675 0.97415 0.97754 0.87337 0.82104 0.86283 0.77058 1.22349 1.22224 1.18762 1.18482 0.94426 0.95455 1.31192 0.90645 1.44294 1.12334 1.55590 1.19500 1.21095 0.97427 0.94058 0.84504 1.22246 1.03326 0.98617 0.92536 1.22203 0.91263 0.87644 0.95548 0.93357 1.22224 1.02970 0.98722 0.94802 1.21584 0.98958 0.97499 0.97834 1.22188 1.00405 0.97984 0.98747 1.22511 1.00907 0.93451 0.85027 1.88113 1.55589 1.45249 1.39550 1.21029 0.89761 0.90217 0.92600 1.22838 1.00788 0.96286 0.97644 1.22419 0.97958 0.96759 0.98849 1.22249 0.99106 0.97236 0.96925 1.22587 1.02152 0.97483 0.95043 0.92935 0.91818 0.95630 0.91874 0.90517 0.90970 0.91261 0.91950 0.92211 0.91481 0.91054 0.93804 0.89288 0.93314 0.89790 0.93639 0.92830 0.92749 0.93377 0.91736 0.93853 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 2 C 0.05 1.42 4.99 -17.43 -0.09 1.33 16 3 Si 0.84 22.14 26.28 -169.99 -4.47 17.68 16 4 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.26 -6.63 5.94 56.52 0.34 -6.30 16 7 C -0.27 -7.29 7.94 -15.06 -0.12 -7.41 16 8 H 0.08 2.22 7.39 -52.49 -0.39 1.83 16 9 N -0.60 -13.92 2.01 -164.38 -0.33 -14.25 16 10 C 0.16 3.44 3.75 -4.04 -0.02 3.42 16 11 C -0.13 -2.43 5.24 -26.73 -0.14 -2.57 16 12 C 0.09 1.51 2.64 -26.69 -0.07 1.44 16 13 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 14 C -0.15 -2.02 5.42 -26.59 -0.14 -2.16 16 15 C -0.12 -1.38 6.03 -26.54 -0.16 -1.54 16 16 C -0.16 -1.83 6.14 -26.59 -0.16 -1.99 16 17 C 0.06 0.82 6.84 37.21 0.25 1.07 16 18 O -0.37 -6.81 9.94 -35.23 -0.35 -7.16 16 19 C 0.17 3.40 3.42 -66.81 -0.23 3.17 16 20 C -0.14 -2.61 6.42 -25.03 -0.16 -2.77 16 21 C -0.12 -1.95 6.91 -24.70 -0.17 -2.13 16 22 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 23 C -0.13 -2.44 6.17 -25.61 -0.16 -2.59 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 25 H 0.06 1.59 4.25 -51.93 -0.22 1.37 16 26 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.90 7.90 -51.93 -0.41 0.49 16 38 H 0.08 1.87 7.02 -51.93 -0.36 1.51 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.59 7.05 -51.93 -0.37 1.22 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.98 339.48 -9.35 -39.33 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.56 Total: 0.27 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.53 Total: -14.86 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.44 Total: -40.37 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.35 Total: -7.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.47 Total: 17.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.98 -9.35 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347429839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.276 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds