Wall clock time and date at job start Mon Mar 30 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48500 * 109.46856 * 275.42469 * 3 2 1 5 5 H 1.48493 * 109.47064 * 35.42300 * 3 2 1 6 6 H 1.48496 * 109.46935 * 155.42338 * 3 2 1 7 7 C 1.38814 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 34.14338 * 7 2 1 9 9 N 1.36931 * 119.99895 * 214.13863 * 7 2 1 10 10 C 1.46500 * 120.00322 * 36.21542 * 9 7 2 11 11 C 1.53004 * 109.47034 * 95.84160 * 10 9 7 12 12 C 1.52998 * 109.47069 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.48526 * 304.98041 * 12 11 10 14 14 C 1.53090 * 109.49007 * 184.95206 * 12 11 10 15 15 C 1.53183 * 109.16357 * 182.40302 * 14 12 11 16 16 C 1.53181 * 109.03550 * 56.98028 * 15 14 12 17 17 C 1.53097 * 109.16025 * 303.01697 * 16 15 14 18 18 O 1.42902 * 109.47932 * 65.00069 * 12 11 10 19 19 C 1.46510 * 120.00041 * 216.21344 * 9 7 2 20 20 C 1.54271 * 110.02860 * 57.56278 * 19 9 7 21 21 C 1.54968 * 104.15492 * 217.13510 * 20 19 9 22 22 C 1.54889 * 102.77805 * 37.89118 * 21 20 19 23 23 C 1.53868 * 110.03045 * 300.34527 * 19 9 7 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47142 * 335.84481 * 10 9 7 26 26 H 1.09003 * 109.47312 * 215.84595 * 10 9 7 27 27 H 1.09007 * 109.46960 * 60.00801 * 11 10 9 28 28 H 1.08989 * 109.47501 * 300.00388 * 11 10 9 29 29 H 1.09000 * 109.51894 * 302.30582 * 14 12 11 30 30 H 1.08996 * 109.52767 * 62.50076 * 14 12 11 31 31 H 1.08995 * 109.54410 * 176.84039 * 15 14 12 32 32 H 1.08999 * 109.54156 * 297.02761 * 15 14 12 33 33 H 1.08995 * 109.52147 * 183.11571 * 16 15 14 34 34 H 1.08995 * 109.52255 * 62.92286 * 16 15 14 35 35 H 1.08996 * 109.48562 * 297.62480 * 17 16 15 36 36 H 1.08998 * 109.47797 * 177.59331 * 17 16 15 37 37 H 1.09003 * 110.01364 * 178.95022 * 19 9 7 38 38 H 1.09000 * 110.48773 * 335.78279 * 20 19 9 39 39 H 1.08998 * 110.48518 * 98.42714 * 20 19 9 40 40 H 1.08998 * 110.71985 * 279.56951 * 21 20 19 41 41 H 1.09002 * 110.91632 * 156.29779 * 21 20 19 42 42 H 1.09000 * 110.48394 * 203.40721 * 22 21 20 43 43 H 1.08997 * 110.48608 * 80.75899 * 22 21 20 44 44 H 1.09002 * 110.03242 * 238.56508 * 23 19 9 45 45 H 1.08996 * 110.03672 * 359.95157 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3831 2.1125 -1.3938 5 1 1.5097 2.6168 0.8115 6 1 3.6003 1.4097 0.5823 7 6 2.0102 -1.2022 0.0005 8 1 1.6098 -2.0571 -0.5240 9 7 3.2025 -1.3041 0.6661 10 6 3.3998 -0.5890 1.9294 11 6 3.1052 -1.5300 3.0994 12 6 3.3105 -0.7830 4.4188 13 1 4.3146 -0.3594 4.4443 14 6 3.1366 -1.7551 5.5885 15 6 3.2842 -0.9880 6.9062 16 6 2.2596 0.1503 6.9390 17 6 2.4675 1.0489 5.7170 18 8 2.3475 0.2673 4.5267 19 6 4.2811 -2.1283 0.1148 20 6 4.6446 -1.6430 -1.3037 21 6 4.9559 -2.9464 -2.0820 22 6 3.9043 -3.9377 -1.5246 23 6 3.8110 -3.5867 -0.0253 24 1 -0.4850 0.8400 0.0004 25 1 2.7251 0.2660 1.9721 26 1 4.4310 -0.2417 1.9932 27 1 3.7799 -2.3850 3.0568 28 1 2.0741 -1.8773 3.0356 29 1 2.1470 -2.2095 5.5405 30 1 3.8985 -2.5326 5.5325 31 1 3.1060 -1.6630 7.7431 32 1 4.2909 -0.5763 6.9775 33 1 2.3944 0.7355 7.8486 34 1 1.2524 -0.2656 6.9182 35 1 3.4605 1.4964 5.7595 36 1 1.7138 1.8362 5.7124 37 1 5.1566 -2.0787 0.7622 38 1 3.8014 -1.1209 -1.7561 39 1 5.5222 -0.9973 -1.2728 40 1 5.9664 -3.2929 -1.8654 41 1 4.8203 -2.8015 -3.1538 42 1 4.2423 -4.9657 -1.6554 43 1 2.9414 -3.7866 -2.0125 44 1 4.4589 -4.2451 0.5533 45 1 2.7807 -3.6815 0.3176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347429839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:23 Heat of formation + Delta-G solvation = -66.418562 kcal Electronic energy + Delta-G solvation = -21858.645665 eV Core-core repulsion = 18874.894955 eV Total energy + Delta-G solvation = -2983.750710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40209 -39.38589 -36.41371 -34.51027 -34.19996 -32.97194 -29.94298 -29.33845 -28.38912 -26.33856 -24.95070 -23.72621 -22.28042 -21.30017 -21.11988 -20.64596 -18.25447 -17.44745 -17.04516 -16.93774 -16.60202 -15.90955 -15.56958 -15.42318 -14.91084 -14.77407 -14.62989 -14.50880 -13.96033 -13.67243 -13.48040 -13.42798 -12.99536 -12.69555 -12.48257 -12.30406 -12.16126 -12.02509 -11.92314 -11.76543 -11.72550 -11.61341 -11.49620 -11.33165 -11.29613 -11.18149 -11.07815 -10.46807 -10.27811 -8.60808 -8.18957 -5.37607 1.35523 1.42042 1.51257 2.51144 2.94732 3.01698 3.43695 3.86897 3.92862 3.98876 3.99688 4.02726 4.08132 4.21310 4.29135 4.42151 4.50739 4.56005 4.66503 4.70366 4.75580 4.78628 4.83808 4.91244 4.94320 4.96445 4.97331 5.01160 5.11690 5.14582 5.20061 5.22174 5.23472 5.31963 5.33247 5.42436 5.51523 5.55207 5.68694 5.70585 6.03002 6.30952 6.47146 7.12735 7.80751 8.22719 9.01903 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.006624 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.329212 B = 4226.224827 C = 5211.271556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.301 1.301 5 H -0.306 1.306 6 H -0.245 1.245 7 C -0.237 4.237 8 H 0.042 0.958 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.115 4.115 12 C 0.091 3.909 13 H 0.065 0.935 14 C -0.145 4.145 15 C -0.117 4.117 16 C -0.152 4.152 17 C 0.048 3.952 18 O -0.410 6.410 19 C 0.162 3.838 20 C -0.139 4.139 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.129 4.129 24 H 0.258 0.742 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -3.745 10.947 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.229 1.229 5 H -0.234 1.234 6 H -0.168 1.168 7 C -0.366 4.366 8 H 0.059 0.941 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.154 4.154 12 C 0.033 3.967 13 H 0.083 0.917 14 C -0.183 4.183 15 C -0.154 4.154 16 C -0.189 4.189 17 C -0.028 4.028 18 O -0.330 6.330 19 C 0.056 3.944 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.168 4.168 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.360 -3.628 10.817 16.821 hybrid contribution -0.509 1.169 -0.217 1.294 sum 11.851 -2.459 10.600 16.089 Atomic orbital electron populations 1.70163 1.07776 1.26951 1.52632 1.25870 0.95098 1.00181 0.99243 0.86394 0.81566 0.82577 0.76302 1.22937 1.23413 1.16820 1.18306 0.95389 0.93848 1.29096 0.94070 1.44418 1.12200 1.56047 1.20112 1.21123 0.97653 0.93693 0.84963 1.22041 1.01230 0.98887 0.93288 1.22214 0.91564 0.87868 0.95016 0.91706 1.22175 1.02617 0.98638 0.94893 1.21594 0.99546 0.97344 0.96962 1.22163 0.99958 0.98127 0.98676 1.22759 1.01834 0.93613 0.84581 1.88054 1.56648 1.46319 1.42012 1.21336 0.89422 0.90208 0.93438 1.22801 0.99813 0.97914 0.97303 1.22387 0.99170 0.94385 0.98859 1.22239 0.98354 0.99362 0.95454 1.22503 1.00464 0.97158 0.96651 0.93343 0.95100 0.93449 0.89712 0.94543 0.92776 0.89326 0.90003 0.90664 0.88715 0.92392 0.92280 0.89331 0.90666 0.93853 0.92080 0.89643 0.91920 0.90279 0.94463 0.90774 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.10 13.97 21.65 0.30 -59.80 16 2 C -0.01 -0.40 4.99 84.86 0.42 0.03 16 3 Si 0.90 47.60 26.28 68.60 1.80 49.40 16 4 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 5 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 6 H -0.24 -11.95 5.94 99.48 0.59 -11.36 16 7 C -0.24 -13.43 7.94 84.03 0.67 -12.76 16 8 H 0.04 2.59 7.39 -2.91 -0.02 2.57 16 9 N -0.61 -28.35 2.01 -673.99 -1.36 -29.70 16 10 C 0.15 6.60 3.75 86.38 0.32 6.92 16 11 C -0.11 -4.34 5.24 30.59 0.16 -4.18 16 12 C 0.09 2.88 2.64 30.62 0.08 2.96 16 13 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 14 C -0.15 -3.62 5.42 30.69 0.17 -3.46 16 15 C -0.12 -2.28 6.03 30.72 0.19 -2.10 16 16 C -0.15 -3.23 6.14 30.69 0.19 -3.04 16 17 C 0.05 1.30 6.84 72.01 0.49 1.80 16 18 O -0.41 -15.25 9.94 -148.98 -1.48 -16.73 16 19 C 0.16 6.12 3.42 45.71 0.16 6.28 16 20 C -0.14 -5.08 6.42 31.70 0.20 -4.88 16 21 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 22 C -0.12 -3.66 6.83 31.67 0.22 -3.45 16 23 C -0.13 -4.50 6.17 31.32 0.19 -4.30 16 24 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 25 H 0.03 1.55 4.25 -2.39 -0.01 1.54 16 26 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 27 H 0.08 2.77 8.14 -2.38 -0.02 2.76 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 2.48 7.90 -2.39 -0.02 2.46 16 38 H 0.04 1.93 7.02 -2.39 -0.02 1.91 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 45 H 0.04 1.64 7.05 -2.39 -0.02 1.62 16 Total: -1.00 -69.29 339.48 3.75 -65.55 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.80 Total: 14.42 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.68 Total: -23.14 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -1.05 Total: -89.50 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.48 Total: -16.73 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.80 Total: 49.40 kcal Total: -69.29 3.75 -65.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347429839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.871 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds