Wall clock time and date at job start Mon Mar 30 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48501 * 109.47289 * 274.91246 * 3 2 1 5 5 H 1.48502 * 109.47349 * 34.91166 * 3 2 1 6 6 H 1.48504 * 109.47267 * 154.91269 * 3 2 1 7 7 C 1.38816 * 119.99982 * 179.72350 * 2 1 3 8 8 H 1.08000 * 119.99683 * 34.46198 * 7 2 1 9 9 N 1.36938 * 120.00149 * 214.47022 * 7 2 1 10 10 C 1.46498 * 120.00002 * 36.21102 * 9 7 2 11 11 C 1.52995 * 109.46980 * 95.88201 * 10 9 7 12 12 C 1.53002 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47961 * 54.97605 * 12 11 10 14 14 C 1.53087 * 109.48162 * 175.00146 * 12 11 10 15 15 C 1.53182 * 109.16411 * 177.58978 * 14 12 11 16 16 C 1.53176 * 109.03739 * 303.01828 * 15 14 12 17 17 C 1.53093 * 109.16152 * 56.97626 * 16 15 14 18 18 O 1.42902 * 109.41794 * 302.39320 * 17 16 15 19 19 C 1.46497 * 119.99516 * 216.21486 * 9 7 2 20 20 C 1.54266 * 110.03441 * 56.83557 * 19 9 7 21 21 C 1.54967 * 104.15732 * 217.13530 * 20 19 9 22 22 C 1.54892 * 102.77819 * 37.88167 * 21 20 19 23 23 C 1.53870 * 110.03465 * 299.61046 * 19 9 7 24 24 H 0.97010 * 119.99828 * 0.28483 * 1 2 3 25 25 H 1.08998 * 109.46834 * 215.87975 * 10 9 7 26 26 H 1.08999 * 109.47478 * 335.87791 * 10 9 7 27 27 H 1.08998 * 109.47152 * 299.99579 * 11 10 9 28 28 H 1.09004 * 109.47463 * 60.00227 * 11 10 9 29 29 H 1.09002 * 109.52246 * 297.49493 * 14 12 11 30 30 H 1.09004 * 109.52722 * 57.61953 * 14 12 11 31 31 H 1.09002 * 109.53812 * 62.88291 * 15 14 12 32 32 H 1.09001 * 109.54326 * 183.15011 * 15 14 12 33 33 H 1.08996 * 109.52188 * 176.87878 * 16 15 14 34 34 H 1.08994 * 109.52067 * 297.00990 * 16 15 14 35 35 H 1.09010 * 109.47910 * 62.37693 * 17 16 15 36 36 H 1.08997 * 109.48130 * 182.40445 * 17 16 15 37 37 H 1.09010 * 110.01451 * 178.21797 * 19 9 7 38 38 H 1.08999 * 110.48452 * 335.77399 * 20 19 9 39 39 H 1.08999 * 110.49208 * 98.42505 * 20 19 9 40 40 H 1.09001 * 110.72040 * 279.56828 * 21 20 19 41 41 H 1.09005 * 110.76812 * 156.22086 * 21 20 19 42 42 H 1.09004 * 110.48254 * 203.40683 * 22 21 20 43 43 H 1.08999 * 110.48129 * 80.76632 * 22 21 20 44 44 H 1.09001 * 110.03293 * 238.57289 * 23 19 9 45 45 H 1.09000 * 110.03104 * 359.95625 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3939 2.1063 -1.3949 5 1 1.5035 2.6205 0.8013 6 1 3.5958 1.4123 0.5936 7 6 2.0102 -1.2022 0.0058 8 1 1.6123 -2.0579 -0.5193 9 7 3.1993 -1.3031 0.6775 10 6 3.3901 -0.5861 1.9407 11 6 3.0906 -1.5254 3.1106 12 6 3.2906 -0.7768 4.4299 13 1 2.6813 0.1270 4.4309 14 6 2.8718 -1.6762 5.5958 15 6 3.1313 -0.9426 6.9152 16 6 4.6101 -0.5499 6.9861 17 6 4.9618 0.3060 5.7664 18 8 4.6678 -0.4236 4.5733 19 6 4.2804 -2.1280 0.1328 20 6 4.6386 -1.6564 -1.2917 21 6 4.9544 -2.9667 -2.0565 22 6 3.9088 -3.9569 -1.4860 23 6 3.8170 -3.5901 0.0095 24 1 -0.4850 0.8401 -0.0042 25 1 4.4208 -0.2381 2.0088 26 1 2.7149 0.2687 1.9790 27 1 2.0599 -1.8734 3.0425 28 1 3.7660 -2.3802 3.0724 29 1 1.8106 -1.9108 5.5120 30 1 3.4518 -2.5988 5.5708 31 1 2.5133 -0.0459 6.9613 32 1 2.8877 -1.5984 7.7511 33 1 4.7921 0.0212 7.8964 34 1 5.2260 -1.4492 6.9909 35 1 4.3745 1.2241 5.7851 36 1 6.0232 0.5528 5.7894 37 1 5.1572 -2.0672 0.7776 38 1 3.7920 -1.1434 -1.7479 39 1 5.5132 -1.0063 -1.2698 40 1 5.9670 -3.3061 -1.8385 41 1 4.8137 -2.8317 -3.1290 42 1 4.2514 -4.9847 -1.6065 43 1 2.9441 -3.8157 -1.9734 44 1 4.4693 -4.2390 0.5939 45 1 2.7879 -3.6860 0.3558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347429840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:27 Heat of formation + Delta-G solvation = -51.154158 kcal Electronic energy + Delta-G solvation = -21817.524249 eV Core-core repulsion = 18834.435453 eV Total energy + Delta-G solvation = -2983.088796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.22928 -37.79997 -34.78666 -33.46824 -32.51174 -31.21132 -28.58553 -27.86500 -26.69152 -24.90743 -23.62535 -22.21006 -20.75639 -20.09625 -19.89149 -18.91024 -16.34131 -16.16031 -15.77754 -15.25426 -14.92088 -14.52181 -14.47623 -14.12456 -13.55275 -13.36766 -12.98441 -12.69725 -12.55533 -12.33363 -11.92227 -11.88804 -11.67667 -11.11952 -11.00775 -10.77653 -10.68319 -10.56023 -10.46033 -10.40619 -10.30862 -10.24788 -9.93138 -9.87832 -9.79057 -9.56413 -9.32374 -9.16660 -8.32379 -6.67155 -6.01004 -3.24567 3.42488 3.55042 3.62922 4.06280 4.63151 4.79556 4.84746 4.93324 5.02784 5.17258 5.28905 5.35784 5.44244 5.48048 5.53568 5.61084 5.70408 5.76155 5.84942 5.93127 5.94464 6.07066 6.12138 6.14691 6.25474 6.28232 6.29301 6.33394 6.42838 6.52231 6.53837 6.60584 6.64894 6.66815 6.81902 6.95727 6.99494 7.13148 7.25745 7.27016 7.56024 8.11898 8.49546 9.13103 9.83706 10.28967 11.15156 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.006526 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.733724 B = 4289.232837 C = 5130.638775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.045 3.955 3 Si 0.839 3.161 4 H -0.293 1.293 5 H -0.297 1.297 6 H -0.260 1.260 7 C -0.263 4.263 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.157 3.843 11 C -0.126 4.126 12 C 0.090 3.910 13 H 0.054 0.946 14 C -0.149 4.149 15 C -0.123 4.123 16 C -0.155 4.155 17 C 0.059 3.941 18 O -0.375 6.375 19 C 0.171 3.829 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.261 0.739 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -3.041 9.468 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.156 4.156 3 Si 0.666 3.334 4 H -0.221 1.221 5 H -0.224 1.224 6 H -0.184 1.184 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.031 3.969 11 C -0.166 4.166 12 C 0.032 3.968 13 H 0.072 0.928 14 C -0.186 4.186 15 C -0.160 4.160 16 C -0.192 4.192 17 C -0.018 4.018 18 O -0.294 6.294 19 C 0.064 3.936 20 C -0.175 4.175 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.172 4.172 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.846 -2.997 9.333 13.204 hybrid contribution 0.162 1.170 0.220 1.201 sum 9.008 -1.827 9.553 13.256 Atomic orbital electron populations 1.70081 1.06300 1.26687 1.49237 1.25432 0.94708 0.97373 0.98119 0.87437 0.82282 0.86127 0.77557 1.22073 1.22422 1.18431 1.18541 0.94588 0.95393 1.30537 0.90573 1.44310 1.12478 1.55500 1.19518 1.21064 0.98157 0.93252 0.84436 1.22251 1.02424 0.99458 0.92419 1.22253 0.82139 0.96886 0.95486 0.92798 1.22210 1.02164 0.99565 0.94705 1.21598 0.96083 1.00466 0.97882 1.22177 0.97263 1.01046 0.98753 1.22494 1.00748 0.93657 0.84903 1.87981 1.26570 1.74675 1.40202 1.21029 0.89844 0.90065 0.92635 1.22833 1.00818 0.96224 0.97661 1.22424 0.98020 0.96730 0.98821 1.22251 0.99091 0.97249 0.96931 1.22583 1.02053 0.97554 0.95028 0.92956 0.94321 0.93160 0.90125 0.92260 0.90851 0.91287 0.92004 0.91896 0.91469 0.91275 0.93614 0.89428 0.93043 0.89846 0.93583 0.92766 0.92756 0.93372 0.91788 0.93796 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.78 -25.57 16 2 C 0.04 1.26 4.99 -17.43 -0.09 1.18 16 3 Si 0.84 21.56 26.29 -169.99 -4.47 17.09 16 4 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.26 -6.49 5.94 56.52 0.34 -6.15 16 7 C -0.26 -7.04 7.92 -15.06 -0.12 -7.16 16 8 H 0.08 2.21 7.44 -52.49 -0.39 1.82 16 9 N -0.60 -13.89 2.01 -164.40 -0.33 -14.22 16 10 C 0.16 3.46 3.75 -4.05 -0.02 3.44 16 11 C -0.13 -2.39 5.24 -26.73 -0.14 -2.53 16 12 C 0.09 1.49 2.64 -26.69 -0.07 1.42 16 13 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.15 -2.03 5.42 -26.59 -0.14 -2.17 16 15 C -0.12 -1.40 6.03 -26.55 -0.16 -1.56 16 16 C -0.15 -1.68 6.14 -26.59 -0.16 -1.84 16 17 C 0.06 0.75 6.84 37.21 0.25 1.00 16 18 O -0.38 -6.20 9.94 -35.23 -0.35 -6.55 16 19 C 0.17 3.46 3.42 -66.82 -0.23 3.23 16 20 C -0.14 -2.64 6.41 -25.03 -0.16 -2.80 16 21 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 22 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 23 C -0.13 -2.46 6.17 -25.62 -0.16 -2.61 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.04 0.85 7.73 -51.93 -0.40 0.44 16 26 H 0.05 1.21 4.58 -51.93 -0.24 0.97 16 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 1.00 7.90 -51.92 -0.41 0.59 16 38 H 0.08 1.86 6.99 -51.93 -0.36 1.50 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.56 7.10 -51.93 -0.37 1.20 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -28.97 339.53 -9.35 -38.32 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.56 Total: 0.50 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.53 Total: -14.69 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.44 Total: -39.79 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.35 Total: -6.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.47 Total: 17.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.97 -9.35 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347429840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.834 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds