Wall clock time and date at job start Mon Mar 30 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48501 * 109.47289 * 274.91246 * 3 2 1 5 5 H 1.48502 * 109.47349 * 34.91166 * 3 2 1 6 6 H 1.48504 * 109.47267 * 154.91269 * 3 2 1 7 7 C 1.38816 * 119.99982 * 179.72350 * 2 1 3 8 8 H 1.08000 * 119.99683 * 34.46198 * 7 2 1 9 9 N 1.36938 * 120.00149 * 214.47022 * 7 2 1 10 10 C 1.46498 * 120.00002 * 36.21102 * 9 7 2 11 11 C 1.52995 * 109.46980 * 95.88201 * 10 9 7 12 12 C 1.53002 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47961 * 54.97605 * 12 11 10 14 14 C 1.53087 * 109.48162 * 175.00146 * 12 11 10 15 15 C 1.53182 * 109.16411 * 177.58978 * 14 12 11 16 16 C 1.53176 * 109.03739 * 303.01828 * 15 14 12 17 17 C 1.53093 * 109.16152 * 56.97626 * 16 15 14 18 18 O 1.42902 * 109.41794 * 302.39320 * 17 16 15 19 19 C 1.46497 * 119.99516 * 216.21486 * 9 7 2 20 20 C 1.54266 * 110.03441 * 56.83557 * 19 9 7 21 21 C 1.54967 * 104.15732 * 217.13530 * 20 19 9 22 22 C 1.54892 * 102.77819 * 37.88167 * 21 20 19 23 23 C 1.53870 * 110.03465 * 299.61046 * 19 9 7 24 24 H 0.97010 * 119.99828 * 0.28483 * 1 2 3 25 25 H 1.08998 * 109.46834 * 215.87975 * 10 9 7 26 26 H 1.08999 * 109.47478 * 335.87791 * 10 9 7 27 27 H 1.08998 * 109.47152 * 299.99579 * 11 10 9 28 28 H 1.09004 * 109.47463 * 60.00227 * 11 10 9 29 29 H 1.09002 * 109.52246 * 297.49493 * 14 12 11 30 30 H 1.09004 * 109.52722 * 57.61953 * 14 12 11 31 31 H 1.09002 * 109.53812 * 62.88291 * 15 14 12 32 32 H 1.09001 * 109.54326 * 183.15011 * 15 14 12 33 33 H 1.08996 * 109.52188 * 176.87878 * 16 15 14 34 34 H 1.08994 * 109.52067 * 297.00990 * 16 15 14 35 35 H 1.09010 * 109.47910 * 62.37693 * 17 16 15 36 36 H 1.08997 * 109.48130 * 182.40445 * 17 16 15 37 37 H 1.09010 * 110.01451 * 178.21797 * 19 9 7 38 38 H 1.08999 * 110.48452 * 335.77399 * 20 19 9 39 39 H 1.08999 * 110.49208 * 98.42505 * 20 19 9 40 40 H 1.09001 * 110.72040 * 279.56828 * 21 20 19 41 41 H 1.09005 * 110.76812 * 156.22086 * 21 20 19 42 42 H 1.09004 * 110.48254 * 203.40683 * 22 21 20 43 43 H 1.08999 * 110.48129 * 80.76632 * 22 21 20 44 44 H 1.09001 * 110.03293 * 238.57289 * 23 19 9 45 45 H 1.09000 * 110.03104 * 359.95625 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3939 2.1063 -1.3949 5 1 1.5035 2.6205 0.8013 6 1 3.5958 1.4123 0.5936 7 6 2.0102 -1.2022 0.0058 8 1 1.6123 -2.0579 -0.5193 9 7 3.1993 -1.3031 0.6775 10 6 3.3901 -0.5861 1.9407 11 6 3.0906 -1.5254 3.1106 12 6 3.2906 -0.7768 4.4299 13 1 2.6813 0.1270 4.4309 14 6 2.8718 -1.6762 5.5958 15 6 3.1313 -0.9426 6.9152 16 6 4.6101 -0.5499 6.9861 17 6 4.9618 0.3060 5.7664 18 8 4.6678 -0.4236 4.5733 19 6 4.2804 -2.1280 0.1328 20 6 4.6386 -1.6564 -1.2917 21 6 4.9544 -2.9667 -2.0565 22 6 3.9088 -3.9569 -1.4860 23 6 3.8170 -3.5901 0.0095 24 1 -0.4850 0.8401 -0.0042 25 1 4.4208 -0.2381 2.0088 26 1 2.7149 0.2687 1.9790 27 1 2.0599 -1.8734 3.0425 28 1 3.7660 -2.3802 3.0724 29 1 1.8106 -1.9108 5.5120 30 1 3.4518 -2.5988 5.5708 31 1 2.5133 -0.0459 6.9613 32 1 2.8877 -1.5984 7.7511 33 1 4.7921 0.0212 7.8964 34 1 5.2260 -1.4492 6.9909 35 1 4.3745 1.2241 5.7851 36 1 6.0232 0.5528 5.7894 37 1 5.1572 -2.0672 0.7776 38 1 3.7920 -1.1434 -1.7479 39 1 5.5132 -1.0063 -1.2698 40 1 5.9670 -3.3061 -1.8385 41 1 4.8137 -2.8317 -3.1290 42 1 4.2514 -4.9847 -1.6065 43 1 2.9441 -3.8157 -1.9734 44 1 4.4693 -4.2390 0.5939 45 1 2.7879 -3.6860 0.3558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347429840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:26 Heat of formation + Delta-G solvation = -66.501882 kcal Electronic energy + Delta-G solvation = -21818.189777 eV Core-core repulsion = 18834.435453 eV Total energy + Delta-G solvation = -2983.754323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41893 -39.39786 -36.43824 -34.51764 -34.20816 -32.98845 -29.95480 -29.34966 -28.39042 -26.36751 -24.93397 -23.75413 -22.31335 -21.30908 -21.12651 -20.66144 -18.26939 -17.48158 -17.03975 -16.90111 -16.59457 -15.97967 -15.59781 -15.42252 -14.89721 -14.82376 -14.68051 -14.45344 -13.96875 -13.64562 -13.55734 -13.38364 -13.14691 -12.71540 -12.42690 -12.30897 -12.15746 -11.99437 -11.96704 -11.77108 -11.73608 -11.65480 -11.51642 -11.34993 -11.31086 -11.22075 -11.09336 -10.48796 -10.30415 -8.62581 -8.20886 -5.39306 1.32467 1.42132 1.52163 2.48427 2.89381 2.99363 3.41129 3.84298 3.92640 3.96576 3.98403 4.01996 4.07746 4.21234 4.27850 4.40945 4.51070 4.56483 4.65646 4.70152 4.76402 4.77784 4.88230 4.92059 4.94117 4.95923 4.96678 5.00412 5.06548 5.11049 5.18272 5.21083 5.22329 5.28418 5.32027 5.41410 5.46913 5.53684 5.67057 5.68972 6.01314 6.30060 6.37886 7.10028 7.77738 8.22018 8.99818 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.006526 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.733724 B = 4289.232837 C = 5130.638775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.895 3.105 4 H -0.300 1.300 5 H -0.301 1.301 6 H -0.249 1.249 7 C -0.235 4.235 8 H 0.045 0.955 9 N -0.607 5.607 10 C 0.157 3.843 11 C -0.113 4.113 12 C 0.095 3.905 13 H 0.042 0.958 14 C -0.145 4.145 15 C -0.122 4.122 16 C -0.149 4.149 17 C 0.049 3.951 18 O -0.397 6.397 19 C 0.162 3.838 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.127 4.127 24 H 0.259 0.741 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -3.667 10.832 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.723 3.277 4 H -0.228 1.228 5 H -0.229 1.229 6 H -0.172 1.172 7 C -0.364 4.364 8 H 0.063 0.937 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.152 4.152 12 C 0.036 3.964 13 H 0.060 0.940 14 C -0.183 4.183 15 C -0.159 4.159 16 C -0.186 4.186 17 C -0.027 4.027 18 O -0.317 6.317 19 C 0.056 3.944 20 C -0.177 4.177 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.167 4.167 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.586 -3.628 10.710 16.190 hybrid contribution -0.618 1.295 -0.190 1.447 sum 10.968 -2.333 10.521 15.376 Atomic orbital electron populations 1.70159 1.07578 1.27058 1.52495 1.25843 0.95108 0.99868 0.99456 0.86534 0.81524 0.82816 0.76815 1.22832 1.22874 1.17235 1.18350 0.95336 0.93978 1.28764 0.93743 1.44432 1.12403 1.55901 1.20075 1.21049 0.97694 0.93146 0.84987 1.21998 1.01122 0.99133 0.92992 1.22061 0.82589 0.96603 0.95102 0.94032 1.22153 1.01987 0.99253 0.94897 1.21618 0.96725 1.00606 0.96946 1.22147 0.96586 1.01088 0.98805 1.22788 1.01913 0.93692 0.84357 1.87922 1.25924 1.75373 1.42439 1.21299 0.89320 0.90379 0.93369 1.22790 0.99821 0.97931 0.97204 1.22394 0.99170 0.94312 0.98961 1.22235 0.98467 0.99301 0.95290 1.22489 1.00513 0.96922 0.96751 0.93159 0.93747 0.95503 0.92256 0.91720 0.91047 0.91085 0.91963 0.89918 0.88912 0.91122 0.93548 0.87636 0.91518 0.93542 0.92373 0.89865 0.91700 0.90281 0.94117 0.91208 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.97 21.65 0.30 -57.43 16 2 C -0.01 -0.31 4.99 84.86 0.42 0.11 16 3 Si 0.90 46.03 26.29 68.60 1.80 47.83 16 4 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 5 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.25 -12.14 5.94 99.48 0.59 -11.54 16 7 C -0.23 -13.02 7.92 84.03 0.67 -12.36 16 8 H 0.04 2.73 7.44 -2.91 -0.02 2.71 16 9 N -0.61 -28.48 2.01 -674.03 -1.35 -29.84 16 10 C 0.16 6.92 3.75 86.38 0.32 7.25 16 11 C -0.11 -4.31 5.24 30.59 0.16 -4.15 16 12 C 0.09 3.06 2.64 30.62 0.08 3.15 16 13 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 14 C -0.15 -3.77 5.42 30.68 0.17 -3.60 16 15 C -0.12 -2.47 6.03 30.71 0.19 -2.28 16 16 C -0.15 -2.76 6.14 30.68 0.19 -2.57 16 17 C 0.05 1.12 6.84 72.01 0.49 1.62 16 18 O -0.40 -12.51 9.94 -148.98 -1.48 -13.99 16 19 C 0.16 6.38 3.42 45.71 0.16 6.54 16 20 C -0.14 -5.18 6.41 31.70 0.20 -4.98 16 21 C -0.11 -3.28 6.91 31.91 0.22 -3.06 16 22 C -0.12 -3.66 6.83 31.67 0.22 -3.45 16 23 C -0.13 -4.57 6.17 31.32 0.19 -4.37 16 24 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 25 H 0.04 1.90 7.73 -2.39 -0.02 1.89 16 26 H 0.03 1.30 4.58 -2.39 -0.01 1.29 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.43 7.90 -2.38 -0.02 2.41 16 38 H 0.05 2.08 6.99 -2.39 -0.02 2.06 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.04 1.78 7.10 -2.39 -0.02 1.77 16 Total: -1.00 -64.43 339.53 3.75 -60.69 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.80 Total: 14.90 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.68 Total: -22.16 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.05 Total: -87.27 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.48 Total: -13.99 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.80 Total: 47.83 kcal Total: -64.43 3.75 -60.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347429840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.815 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds