Wall clock time and date at job start Mon Mar 30 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00178 * 2 1 4 4 H 1.48504 * 109.47062 * 269.99641 * 3 2 1 5 5 H 1.48503 * 109.47328 * 149.99529 * 3 2 1 6 6 H 1.48501 * 109.47533 * 29.99478 * 3 2 1 7 7 C 1.37883 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99365 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47479 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99962 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46979 * 34.99345 * 12 11 10 14 14 C 1.53005 * 109.46833 * 275.00050 * 12 11 10 15 15 C 1.52998 * 109.47130 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47150 * 59.99605 * 15 14 12 17 17 C 1.53005 * 109.47426 * 300.00213 * 16 15 14 18 18 C 1.52998 * 109.47130 * 59.99774 * 17 16 15 19 19 H 1.08998 * 109.47276 * 59.99801 * 18 17 16 20 20 C 1.52995 * 109.47101 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.43392 * 179.49825 * 20 18 17 22 22 C 1.54811 * 110.48865 * 56.80862 * 20 18 17 23 23 C 1.54996 * 102.09204 * 220.44224 * 22 20 18 24 24 O 1.44375 * 103.49043 * 37.02159 * 23 22 20 25 25 C 1.43745 * 106.97801 * 319.93982 * 24 23 22 26 26 H 0.96997 * 120.00109 * 179.97438 * 1 2 3 27 27 H 1.09012 * 109.47057 * 299.99899 * 9 7 2 28 28 H 1.09001 * 109.47732 * 59.99658 * 9 7 2 29 29 H 1.08999 * 109.46787 * 299.99654 * 10 9 7 30 30 H 1.09001 * 109.47028 * 59.99092 * 10 9 7 31 31 H 1.00898 * 111.00099 * 56.04573 * 11 10 9 32 32 H 1.09004 * 109.46548 * 299.99915 * 14 12 11 33 33 H 1.08998 * 109.47471 * 59.99529 * 14 12 11 34 34 H 1.09003 * 109.47439 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47276 * 300.00199 * 15 14 12 36 36 H 1.09006 * 109.47361 * 60.00104 * 16 15 14 37 37 H 1.09001 * 109.47026 * 180.02562 * 16 15 14 38 38 H 1.08998 * 109.47471 * 180.02562 * 17 16 15 39 39 H 1.09006 * 109.46762 * 300.00258 * 17 16 15 40 40 H 1.08997 * 110.91003 * 338.64189 * 22 20 18 41 41 H 1.09001 * 110.90736 * 102.24231 * 22 20 18 42 42 H 1.08998 * 110.61993 * 278.52220 * 23 22 20 43 43 H 1.08991 * 110.75197 * 155.59036 * 23 22 20 44 44 H 1.08997 * 109.88264 * 267.08586 * 25 24 23 45 45 H 1.09002 * 109.87980 * 145.93289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 3.5467 1.4401 0.7001 6 1 1.4467 2.6527 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3176 -5.8286 0.5918 14 6 2.8547 -6.3931 -1.4350 15 6 3.8180 -7.5817 -1.4344 16 6 3.1231 -8.8010 -0.8251 17 6 2.7035 -8.4839 0.6117 18 6 1.7402 -7.2953 0.6111 19 1 0.8578 -7.5430 0.0211 20 6 1.3210 -6.9778 2.0479 21 1 0.6405 -6.1265 2.0665 22 6 2.5651 -6.7001 2.9264 23 6 2.1955 -7.4189 4.2490 24 8 1.4966 -8.6018 3.8056 25 6 0.6635 -8.2083 2.7023 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6240 -2.5567 0.8904 28 1 0.6246 -2.5572 -0.8896 29 1 2.8725 -3.6048 -0.8877 30 1 2.8713 -3.6040 0.8922 31 1 0.8751 -4.9845 -0.7808 32 1 1.9722 -6.6404 -2.0250 33 1 3.3502 -5.5246 -1.8689 34 1 4.1167 -7.8080 -2.4580 35 1 4.7004 -7.3340 -0.8444 36 1 2.2406 -9.0489 -1.4150 37 1 3.8096 -9.6477 -0.8243 38 1 2.2088 -9.3527 1.0459 39 1 3.5860 -8.2361 1.2016 40 1 3.4598 -7.1371 2.4831 41 1 2.6958 -5.6302 3.0885 42 1 1.5426 -6.7925 4.8568 43 1 3.0929 -7.6891 4.8055 44 1 -0.3316 -7.9486 3.0634 45 1 0.5971 -9.0214 1.9794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353243451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:45 Heat of formation + Delta-G solvation = -83.504517 kcal Electronic energy + Delta-G solvation = -21513.468268 eV Core-core repulsion = 18528.976655 eV Total energy + Delta-G solvation = -2984.491613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27088 -38.17215 -35.25389 -33.28279 -33.05923 -30.22854 -29.96950 -28.36782 -26.95440 -23.71170 -23.37521 -22.59023 -21.58221 -20.92715 -20.42375 -19.01300 -16.79332 -16.37920 -16.10812 -15.36301 -14.95640 -14.70412 -14.53308 -14.33414 -13.88050 -13.73328 -13.23402 -13.03225 -12.88526 -12.47718 -12.28243 -12.06287 -11.79301 -11.43057 -11.36290 -11.24137 -11.00784 -10.96561 -10.85509 -10.80101 -10.37155 -10.19337 -10.13464 -10.08673 -10.01214 -9.64647 -9.59282 -8.57463 -8.32290 -7.83476 -6.36058 -4.04949 3.42883 3.46706 3.62443 3.98930 4.41672 4.48533 4.58053 4.71706 4.83323 4.92313 4.98190 5.09325 5.21666 5.23971 5.28250 5.33563 5.41864 5.46266 5.50127 5.58409 5.64244 5.73236 5.74732 5.81733 5.86242 5.97273 6.01497 6.03813 6.11710 6.17167 6.18284 6.20826 6.29369 6.40875 6.43566 6.47834 6.82611 6.90877 7.27857 7.50381 7.69524 7.87158 8.24907 8.46935 8.89251 9.67504 11.05104 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.004515 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.283449 B = 6199.920272 C = 7062.464171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.013 3.987 10 C 0.075 3.925 11 N -0.686 5.686 12 C 0.093 3.907 13 H 0.074 0.926 14 C -0.150 4.150 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.062 4.062 19 H 0.069 0.931 20 C -0.106 4.106 21 H 0.100 0.900 22 C -0.151 4.151 23 C 0.046 3.954 24 O -0.384 6.384 25 C 0.047 3.953 26 H 0.270 0.730 27 H 0.015 0.985 28 H 0.003 0.997 29 H 0.016 0.984 30 H 0.057 0.943 31 H 0.334 0.666 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -18.374 1.752 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.024 4.024 10 C -0.053 4.053 11 N -0.314 5.314 12 C -0.018 4.018 13 H 0.092 0.908 14 C -0.189 4.189 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.081 4.081 19 H 0.087 0.913 20 C -0.125 4.125 21 H 0.118 0.882 22 C -0.189 4.189 23 C -0.031 4.031 24 O -0.303 6.303 25 C -0.030 4.030 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.021 0.979 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.161 -16.921 2.543 17.873 hybrid contribution 0.535 -1.341 -1.130 1.833 sum 5.695 -18.262 1.413 19.182 Atomic orbital electron populations 1.70740 1.06880 1.30705 1.46599 1.25824 0.96549 1.02655 0.93800 0.83518 0.74670 0.75158 0.76702 1.21517 1.21523 1.20957 1.22018 0.94207 0.92048 1.55878 0.93477 1.19187 0.94664 0.92311 0.96279 1.21989 0.96570 0.88097 0.98633 1.60693 1.19483 1.01968 1.49304 1.21572 0.95153 0.90924 0.94107 0.90813 1.22291 0.99642 0.98270 0.98668 1.21473 0.98350 0.95071 1.00401 1.21542 1.00143 0.97438 0.96471 1.21731 0.99619 0.97980 0.96318 1.21048 0.98001 0.94062 0.95014 0.91290 1.22456 0.97343 0.98206 0.94499 0.88180 1.23255 0.98781 1.01670 0.95174 1.23541 0.96252 0.86793 0.96476 1.88812 1.60138 1.31743 1.49582 1.23323 0.93760 0.97344 0.88558 0.91993 0.96663 0.97860 0.96606 0.92439 0.84845 0.92037 0.91976 0.92424 0.92169 0.92198 0.92330 0.91622 0.91651 0.90445 0.90088 0.92384 0.89506 0.92824 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.65 55.43 0.76 -27.42 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.39 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.60 -17.25 9.11 -34.44 -0.31 -17.57 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 9 C 0.01 0.33 4.54 -27.89 -0.13 0.21 16 10 C 0.08 1.55 5.42 -3.82 -0.02 1.53 16 11 N -0.69 -11.36 5.51 -106.72 -0.59 -11.95 16 12 C 0.09 1.25 1.72 -67.71 -0.12 1.14 16 13 H 0.07 1.07 6.92 -51.93 -0.36 0.71 16 14 C -0.15 -1.86 5.17 -26.73 -0.14 -2.00 16 15 C -0.11 -1.20 5.92 -26.73 -0.16 -1.36 16 16 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 17 C -0.12 -1.22 4.64 -26.73 -0.12 -1.35 16 18 C -0.06 -0.72 1.65 -90.62 -0.15 -0.87 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.11 -1.31 2.75 -89.09 -0.25 -1.55 16 21 H 0.10 1.44 7.64 -51.93 -0.40 1.05 16 22 C -0.15 -1.80 5.52 -24.72 -0.14 -1.94 16 23 C 0.05 0.52 7.72 38.21 0.29 0.82 16 24 O -0.38 -4.99 11.52 -35.23 -0.41 -5.40 16 25 C 0.05 0.55 6.77 37.73 0.26 0.80 16 26 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 27 H 0.02 0.41 8.01 -51.92 -0.42 0.00 16 28 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 29 H 0.02 0.33 7.43 -51.93 -0.39 -0.06 16 30 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.33 5.48 8.47 -39.29 -0.33 5.15 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.67 6.45 -51.93 -0.33 0.33 16 39 H 0.06 0.70 6.00 -51.93 -0.31 0.39 16 40 H 0.08 0.88 5.53 -51.93 -0.29 0.60 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.86 6.35 -51.93 -0.33 0.53 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -30.12 336.92 -9.58 -39.70 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.10 Total: 2.69 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -1.23 Total: -23.09 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.17 Total: -39.37 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.41 Total: -5.40 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.12 -9.58 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353243451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.808 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds