Wall clock time and date at job start Mon Mar 30 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00178 * 2 1 4 4 H 1.48504 * 109.47062 * 269.99641 * 3 2 1 5 5 H 1.48503 * 109.47328 * 149.99529 * 3 2 1 6 6 H 1.48501 * 109.47533 * 29.99478 * 3 2 1 7 7 C 1.37883 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99365 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47479 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99962 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46979 * 34.99345 * 12 11 10 14 14 C 1.53005 * 109.46833 * 275.00050 * 12 11 10 15 15 C 1.52998 * 109.47130 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47150 * 59.99605 * 15 14 12 17 17 C 1.53005 * 109.47426 * 300.00213 * 16 15 14 18 18 C 1.52998 * 109.47130 * 59.99774 * 17 16 15 19 19 H 1.08998 * 109.47276 * 59.99801 * 18 17 16 20 20 C 1.52995 * 109.47101 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.43392 * 179.49825 * 20 18 17 22 22 C 1.54811 * 110.48865 * 56.80862 * 20 18 17 23 23 C 1.54996 * 102.09204 * 220.44224 * 22 20 18 24 24 O 1.44375 * 103.49043 * 37.02159 * 23 22 20 25 25 C 1.43745 * 106.97801 * 319.93982 * 24 23 22 26 26 H 0.96997 * 120.00109 * 179.97438 * 1 2 3 27 27 H 1.09012 * 109.47057 * 299.99899 * 9 7 2 28 28 H 1.09001 * 109.47732 * 59.99658 * 9 7 2 29 29 H 1.08999 * 109.46787 * 299.99654 * 10 9 7 30 30 H 1.09001 * 109.47028 * 59.99092 * 10 9 7 31 31 H 1.00898 * 111.00099 * 56.04573 * 11 10 9 32 32 H 1.09004 * 109.46548 * 299.99915 * 14 12 11 33 33 H 1.08998 * 109.47471 * 59.99529 * 14 12 11 34 34 H 1.09003 * 109.47439 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47276 * 300.00199 * 15 14 12 36 36 H 1.09006 * 109.47361 * 60.00104 * 16 15 14 37 37 H 1.09001 * 109.47026 * 180.02562 * 16 15 14 38 38 H 1.08998 * 109.47471 * 180.02562 * 17 16 15 39 39 H 1.09006 * 109.46762 * 300.00258 * 17 16 15 40 40 H 1.08997 * 110.91003 * 338.64189 * 22 20 18 41 41 H 1.09001 * 110.90736 * 102.24231 * 22 20 18 42 42 H 1.08998 * 110.61993 * 278.52220 * 23 22 20 43 43 H 1.08991 * 110.75197 * 155.59036 * 23 22 20 44 44 H 1.08997 * 109.88264 * 267.08586 * 25 24 23 45 45 H 1.09002 * 109.87980 * 145.93289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 3.5467 1.4401 0.7001 6 1 1.4467 2.6527 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3176 -5.8286 0.5918 14 6 2.8547 -6.3931 -1.4350 15 6 3.8180 -7.5817 -1.4344 16 6 3.1231 -8.8010 -0.8251 17 6 2.7035 -8.4839 0.6117 18 6 1.7402 -7.2953 0.6111 19 1 0.8578 -7.5430 0.0211 20 6 1.3210 -6.9778 2.0479 21 1 0.6405 -6.1265 2.0665 22 6 2.5651 -6.7001 2.9264 23 6 2.1955 -7.4189 4.2490 24 8 1.4966 -8.6018 3.8056 25 6 0.6635 -8.2083 2.7023 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6240 -2.5567 0.8904 28 1 0.6246 -2.5572 -0.8896 29 1 2.8725 -3.6048 -0.8877 30 1 2.8713 -3.6040 0.8922 31 1 0.8751 -4.9845 -0.7808 32 1 1.9722 -6.6404 -2.0250 33 1 3.3502 -5.5246 -1.8689 34 1 4.1167 -7.8080 -2.4580 35 1 4.7004 -7.3340 -0.8444 36 1 2.2406 -9.0489 -1.4150 37 1 3.8096 -9.6477 -0.8243 38 1 2.2088 -9.3527 1.0459 39 1 3.5860 -8.2361 1.2016 40 1 3.4598 -7.1371 2.4831 41 1 2.6958 -5.6302 3.0885 42 1 1.5426 -6.7925 4.8568 43 1 3.0929 -7.6891 4.8055 44 1 -0.3316 -7.9486 3.0634 45 1 0.5971 -9.0214 1.9794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353243451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:44 Heat of formation + Delta-G solvation = -101.690811 kcal Electronic energy + Delta-G solvation = -21514.256885 eV Core-core repulsion = 18528.976655 eV Total energy + Delta-G solvation = -2985.280230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26696 -39.21238 -36.83262 -35.04330 -34.17893 -31.72851 -30.99316 -29.47707 -28.34793 -25.65859 -24.33906 -23.57144 -22.96612 -22.44973 -21.37167 -20.03994 -18.90539 -17.40244 -17.11089 -16.52657 -16.25721 -15.86989 -15.68347 -15.50804 -15.45892 -14.96839 -14.81866 -14.20889 -14.13431 -13.78445 -13.52320 -13.30815 -13.18196 -12.82575 -12.74724 -12.30768 -12.23636 -12.12154 -11.99625 -11.95737 -11.88454 -11.76663 -11.68043 -11.20984 -11.04750 -10.97125 -10.65755 -10.57266 -10.55304 -9.22682 -8.70787 -6.41154 1.51204 1.60582 1.78369 2.54943 3.05665 3.14890 3.24741 3.48705 3.76849 3.87202 3.96110 4.03803 4.17531 4.24253 4.29113 4.32167 4.38049 4.41693 4.46379 4.52312 4.56862 4.66239 4.75787 4.78864 4.85439 4.89164 4.92295 4.93225 5.03621 5.08794 5.12125 5.21527 5.26997 5.30270 5.30731 5.37571 5.43872 5.46785 5.56392 5.92062 5.95800 6.16050 6.22141 6.45176 6.59959 7.41259 8.70453 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.004515 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.283449 B = 6199.920272 C = 7062.464171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.620 4.620 8 H 0.049 0.951 9 C 0.018 3.982 10 C 0.097 3.903 11 N -0.685 5.685 12 C 0.096 3.904 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.054 4.054 19 H 0.071 0.929 20 C -0.106 4.106 21 H 0.074 0.926 22 C -0.149 4.149 23 C 0.046 3.954 24 O -0.396 6.396 25 C 0.049 3.951 26 H 0.255 0.745 27 H -0.009 1.009 28 H -0.014 1.014 29 H 0.014 0.986 30 H 0.052 0.948 31 H 0.336 0.664 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -19.645 1.517 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.235 4.235 3 Si 0.941 3.059 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.658 4.658 8 H 0.067 0.933 9 C -0.019 4.019 10 C -0.032 4.032 11 N -0.314 5.314 12 C -0.014 4.014 13 H 0.083 0.917 14 C -0.185 4.185 15 C -0.149 4.149 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.073 4.073 19 H 0.089 0.911 20 C -0.125 4.125 21 H 0.092 0.908 22 C -0.186 4.186 23 C -0.030 4.030 24 O -0.315 6.315 25 C -0.027 4.027 26 H 0.065 0.935 27 H 0.009 0.991 28 H 0.005 0.995 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.072 0.928 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.589 -18.232 2.305 19.523 hybrid contribution 0.061 -0.983 -1.046 1.437 sum 6.650 -19.215 1.259 20.373 Atomic orbital electron populations 1.70881 1.07961 1.29903 1.48660 1.27439 0.96586 1.06831 0.92631 0.82901 0.74170 0.70970 0.77839 1.19712 1.19392 1.20746 1.22451 0.94598 0.93463 1.55331 0.93284 1.19072 0.94960 0.93743 0.94165 1.21564 0.95100 0.88331 0.98226 1.60610 1.19895 1.01392 1.49547 1.21623 0.94363 0.90286 0.95144 0.91667 1.22232 1.00235 0.98678 0.97396 1.21456 0.97748 0.94432 1.01297 1.21528 1.00633 0.97385 0.95636 1.21683 0.99034 0.97209 0.97099 1.20984 0.98338 0.93730 0.94284 0.91080 1.22377 0.97114 0.97737 0.95244 0.90798 1.23214 0.98932 1.00796 0.95698 1.23622 0.96871 0.86370 0.96179 1.88798 1.60398 1.32375 1.49930 1.23337 0.93484 0.97321 0.88565 0.93514 0.99116 0.99532 0.96791 0.92937 0.84654 0.91655 0.93721 0.91290 0.92213 0.91697 0.90663 0.90800 0.91806 0.89609 0.91698 0.92525 0.87653 0.92849 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.65 21.45 0.29 -58.67 16 2 C -0.04 -2.20 5.46 84.66 0.46 -1.73 16 3 Si 1.12 50.73 29.90 68.60 2.05 52.78 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.62 -35.99 9.11 25.60 0.23 -35.76 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.02 0.95 4.54 29.85 0.14 1.09 16 10 C 0.10 4.06 5.42 86.30 0.47 4.53 16 11 N -0.69 -23.03 5.51 -491.55 -2.71 -25.74 16 12 C 0.10 2.52 1.72 44.92 0.08 2.60 16 13 H 0.07 1.85 6.92 -2.38 -0.02 1.84 16 14 C -0.15 -3.46 5.17 30.60 0.16 -3.31 16 15 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 16 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 17 C -0.11 -2.03 4.64 30.60 0.14 -1.89 16 18 C -0.05 -1.20 1.65 -10.80 -0.02 -1.21 16 19 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.11 -2.55 2.75 -9.80 -0.03 -2.58 16 21 H 0.07 2.18 7.64 -2.38 -0.02 2.16 16 22 C -0.15 -3.46 5.52 31.90 0.18 -3.28 16 23 C 0.05 0.99 7.72 72.67 0.56 1.55 16 24 O -0.40 -9.65 11.52 -148.98 -1.72 -11.37 16 25 C 0.05 1.09 6.77 72.35 0.49 1.58 16 26 H 0.26 16.34 7.22 -92.71 -0.67 15.67 16 27 H -0.01 -0.55 8.01 -2.38 -0.02 -0.57 16 28 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 29 H 0.01 0.59 7.43 -2.39 -0.02 0.57 16 30 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 31 H 0.34 11.17 8.47 -89.70 -0.76 10.41 16 32 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.04 1.21 7.45 -2.39 -0.02 1.19 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.26 6.45 -2.39 -0.02 1.25 16 39 H 0.06 1.20 6.00 -2.38 -0.01 1.19 16 40 H 0.09 1.84 5.53 -2.39 -0.01 1.83 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.83 6.35 -2.39 -0.02 1.81 16 Total: -1.00 -64.96 336.92 1.43 -63.53 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.29 Total: 21.44 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.22 Total: -41.97 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.42 Total: -84.41 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.72 Total: -11.37 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -64.96 1.43 -63.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353243451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.162 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds