Wall clock time and date at job start Mon Mar 30 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48491 * 109.47212 * 270.00085 * 3 2 1 5 5 H 1.48496 * 109.47012 * 149.99771 * 3 2 1 6 6 H 1.48499 * 109.47123 * 30.00333 * 3 2 1 7 7 C 1.37871 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00167 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99716 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47005 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99794 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47539 * 34.63351 * 12 11 10 14 14 C 1.53004 * 109.47070 * 274.63070 * 12 11 10 15 15 C 1.53001 * 109.46992 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47096 * 60.00560 * 15 14 12 17 17 C 1.53001 * 109.47093 * 299.99683 * 16 15 14 18 18 C 1.52994 * 109.47352 * 60.00175 * 17 16 15 19 19 H 1.08998 * 109.47222 * 60.00045 * 18 17 16 20 20 C 1.52995 * 109.47494 * 180.02562 * 18 17 16 21 21 H 1.08999 * 110.45775 * 179.97438 * 20 18 17 22 22 C 1.54513 * 110.50832 * 302.55321 * 20 18 17 23 23 C 1.54482 * 104.06112 * 118.64538 * 22 20 18 24 24 O 1.44419 * 104.80217 * 23.98251 * 23 22 20 25 25 C 1.44429 * 105.27382 * 319.48291 * 24 23 22 26 26 H 0.96997 * 119.99832 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47007 * 299.99757 * 9 7 2 28 28 H 1.09003 * 109.46901 * 60.00008 * 9 7 2 29 29 H 1.09002 * 109.47125 * 299.99720 * 10 9 7 30 30 H 1.08998 * 109.47370 * 59.99917 * 10 9 7 31 31 H 1.00906 * 110.99309 * 303.95316 * 11 10 9 32 32 H 1.08998 * 109.47169 * 300.00508 * 14 12 11 33 33 H 1.09000 * 109.46620 * 60.00170 * 14 12 11 34 34 H 1.09007 * 109.46605 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.47466 * 300.00188 * 15 14 12 36 36 H 1.09005 * 109.47575 * 59.99717 * 16 15 14 37 37 H 1.09000 * 109.47492 * 179.97438 * 16 15 14 38 38 H 1.09006 * 109.47400 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.46920 * 300.00035 * 17 16 15 40 40 H 1.08997 * 110.51188 * 237.29001 * 22 20 18 41 41 H 1.08997 * 110.50986 * 0.02562 * 22 20 18 42 42 H 1.09001 * 110.37176 * 142.81577 * 23 22 20 43 43 H 1.09004 * 110.37269 * 265.03722 * 23 22 20 44 44 H 1.08995 * 110.37248 * 281.68214 * 25 24 23 45 45 H 1.09009 * 110.37013 * 159.34413 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6365 0.0011 12 6 6.0170 -4.0079 0.0004 13 1 5.3583 -4.6496 -0.5847 14 6 6.0899 -4.5269 1.4379 15 6 6.6387 -5.9551 1.4372 16 6 8.0389 -5.9630 0.8206 17 6 7.9661 -5.4440 -0.6168 18 6 7.4173 -4.0158 -0.6162 19 1 8.0756 -3.3738 -0.0310 20 6 7.3439 -3.4970 -2.0537 21 1 6.9540 -2.4793 -2.0719 22 6 8.7359 -3.5550 -2.7218 23 6 8.5398 -4.5164 -3.9149 24 8 7.1271 -4.4564 -4.2088 25 6 6.4716 -4.4303 -2.9221 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6796 -0.8894 28 1 3.8745 -0.6807 0.8906 29 1 3.6580 -3.1505 0.8897 30 1 3.6586 -3.1501 -0.8903 31 1 5.8527 -2.1100 -0.7799 32 1 6.7485 -3.8851 2.0230 33 1 5.0924 -4.5208 1.8773 34 1 6.6902 -6.3250 2.4613 35 1 5.9804 -6.5971 0.8520 36 1 8.6973 -5.3210 1.4058 37 1 8.4302 -6.9803 0.8205 38 1 8.9637 -5.4500 -1.0563 39 1 7.3078 -6.0860 -1.2020 40 1 9.0326 -2.5666 -3.0726 41 1 9.4762 -3.9536 -2.0282 42 1 9.1207 -4.1792 -4.7734 43 1 8.8286 -5.5301 -3.6369 44 1 6.4413 -5.4310 -2.4913 45 1 5.4635 -4.0268 -3.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353243454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:47 Heat of formation + Delta-G solvation = -72.898371 kcal Electronic energy + Delta-G solvation = -21567.961329 eV Core-core repulsion = 18583.929633 eV Total energy + Delta-G solvation = -2984.031696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51676 -38.15108 -35.25395 -33.44875 -32.76766 -30.63978 -30.06737 -28.56642 -27.38021 -24.15419 -23.84796 -22.63384 -21.43717 -20.35338 -20.30716 -19.08624 -16.76357 -16.66674 -16.22989 -15.50252 -15.24580 -14.69255 -14.53727 -14.22659 -14.11260 -13.97571 -13.42147 -13.22457 -12.66956 -12.64457 -12.31122 -12.15237 -11.92568 -11.72468 -11.47598 -11.34290 -11.12795 -11.09202 -10.95675 -10.77839 -10.55103 -10.33530 -10.05942 -9.96281 -9.81359 -9.70763 -9.58168 -9.20673 -8.52159 -7.91047 -6.02979 -4.01209 3.33188 3.40562 3.46426 3.84646 4.33429 4.43270 4.47653 4.54549 4.65243 4.73597 4.85378 4.93670 5.07347 5.12226 5.20078 5.31655 5.32385 5.38964 5.41706 5.47927 5.50245 5.58963 5.62953 5.68380 5.78738 5.81417 5.86389 6.01446 6.04929 6.11460 6.15806 6.19497 6.22873 6.31048 6.35373 6.51610 6.68294 6.80429 7.17144 7.39436 7.64667 7.78285 7.93275 8.54754 9.01217 9.59623 11.10442 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.004897 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.815643 B = 5716.514102 C = 6571.322008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.692 5.692 12 C 0.092 3.908 13 H 0.041 0.959 14 C -0.107 4.107 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.078 4.078 19 H 0.082 0.918 20 C -0.122 4.122 21 H 0.087 0.913 22 C -0.151 4.151 23 C 0.044 3.956 24 O -0.376 6.376 25 C 0.044 3.956 26 H 0.263 0.737 27 H 0.007 0.993 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.334 0.666 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.393 -11.703 -2.378 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.324 5.324 12 C -0.018 4.018 13 H 0.059 0.941 14 C -0.145 4.145 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.097 4.097 19 H 0.100 0.900 20 C -0.141 4.141 21 H 0.106 0.894 22 C -0.188 4.188 23 C -0.033 4.033 24 O -0.295 6.295 25 C -0.033 4.033 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.167 -11.500 -1.909 23.294 hybrid contribution 0.150 0.704 -0.712 1.012 sum 20.317 -10.796 -2.620 23.156 Atomic orbital electron populations 1.69918 1.06324 1.26894 1.51196 1.25002 0.94711 0.99176 0.94486 0.86759 0.80498 0.83499 0.78457 1.20397 1.18787 1.21439 1.21071 0.89408 0.94481 1.50934 0.91151 1.19544 0.96654 0.91936 0.96619 1.21984 0.84155 0.99877 0.99350 1.60676 1.09810 1.12167 1.49782 1.21506 0.93742 0.90682 0.95890 0.94127 1.21521 1.01602 0.94866 0.96540 1.21553 0.96252 0.97476 1.00526 1.21525 0.97438 1.00568 0.95981 1.21724 1.00857 0.95897 0.97048 1.21295 0.97509 0.96766 0.94147 0.90014 1.22635 0.95472 1.00739 0.95292 0.89442 1.23029 0.97510 1.00712 0.97583 1.23388 0.83445 0.98537 0.97885 1.89135 1.17719 1.95260 1.27375 1.23665 0.97249 0.99205 0.83142 0.92747 0.97432 0.95709 0.91759 0.96167 0.84645 0.91471 0.91712 0.92073 0.92268 0.91980 0.92328 0.91802 0.91717 0.90734 0.90133 0.89462 0.92542 0.91583 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.50 5.42 -3.82 -0.02 1.48 16 11 N -0.69 -11.32 6.31 -106.72 -0.67 -11.99 16 12 C 0.09 1.21 1.78 -67.71 -0.12 1.09 16 13 H 0.04 0.57 6.95 -51.93 -0.36 0.21 16 14 C -0.11 -1.36 5.43 -26.73 -0.15 -1.50 16 15 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 16 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 17 C -0.12 -1.05 4.64 -26.73 -0.12 -1.18 16 18 C -0.08 -0.83 1.63 -90.62 -0.15 -0.98 16 19 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.12 -1.33 2.74 -89.06 -0.24 -1.57 16 21 H 0.09 1.06 6.28 -51.93 -0.33 0.73 16 22 C -0.15 -1.36 6.19 -25.16 -0.16 -1.51 16 23 C 0.04 0.42 7.63 37.93 0.29 0.71 16 24 O -0.38 -4.92 11.65 -35.23 -0.41 -5.33 16 25 C 0.04 0.53 5.99 37.93 0.23 0.75 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 28 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 29 H 0.06 1.33 7.46 -51.93 -0.39 0.94 16 30 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 31 H 0.33 5.24 6.18 -39.29 -0.24 5.00 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.92 7.48 -51.93 -0.39 0.53 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 6.37 -51.93 -0.33 0.17 16 39 H 0.06 0.61 5.99 -51.93 -0.31 0.29 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.62 6.26 -51.93 -0.32 0.29 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.74 5.54 -51.93 -0.29 0.45 16 45 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -30.95 331.90 -9.24 -40.19 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.96 Total: 1.23 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -1.31 Total: -19.09 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.10 Total: -39.44 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.41 Total: -5.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.95 -9.24 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353243454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.709 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds