Wall clock time and date at job start Mon Mar 30 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48491 * 109.47212 * 270.00085 * 3 2 1 5 5 H 1.48496 * 109.47012 * 149.99771 * 3 2 1 6 6 H 1.48499 * 109.47123 * 30.00333 * 3 2 1 7 7 C 1.37871 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00167 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99716 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47005 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99794 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47539 * 34.63351 * 12 11 10 14 14 C 1.53004 * 109.47070 * 274.63070 * 12 11 10 15 15 C 1.53001 * 109.46992 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47096 * 60.00560 * 15 14 12 17 17 C 1.53001 * 109.47093 * 299.99683 * 16 15 14 18 18 C 1.52994 * 109.47352 * 60.00175 * 17 16 15 19 19 H 1.08998 * 109.47222 * 60.00045 * 18 17 16 20 20 C 1.52995 * 109.47494 * 180.02562 * 18 17 16 21 21 H 1.08999 * 110.45775 * 179.97438 * 20 18 17 22 22 C 1.54513 * 110.50832 * 302.55321 * 20 18 17 23 23 C 1.54482 * 104.06112 * 118.64538 * 22 20 18 24 24 O 1.44419 * 104.80217 * 23.98251 * 23 22 20 25 25 C 1.44429 * 105.27382 * 319.48291 * 24 23 22 26 26 H 0.96997 * 119.99832 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47007 * 299.99757 * 9 7 2 28 28 H 1.09003 * 109.46901 * 60.00008 * 9 7 2 29 29 H 1.09002 * 109.47125 * 299.99720 * 10 9 7 30 30 H 1.08998 * 109.47370 * 59.99917 * 10 9 7 31 31 H 1.00906 * 110.99309 * 303.95316 * 11 10 9 32 32 H 1.08998 * 109.47169 * 300.00508 * 14 12 11 33 33 H 1.09000 * 109.46620 * 60.00170 * 14 12 11 34 34 H 1.09007 * 109.46605 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.47466 * 300.00188 * 15 14 12 36 36 H 1.09005 * 109.47575 * 59.99717 * 16 15 14 37 37 H 1.09000 * 109.47492 * 179.97438 * 16 15 14 38 38 H 1.09006 * 109.47400 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.46920 * 300.00035 * 17 16 15 40 40 H 1.08997 * 110.51188 * 237.29001 * 22 20 18 41 41 H 1.08997 * 110.50986 * 0.02562 * 22 20 18 42 42 H 1.09001 * 110.37176 * 142.81577 * 23 22 20 43 43 H 1.09004 * 110.37269 * 265.03722 * 23 22 20 44 44 H 1.08995 * 110.37248 * 281.68214 * 25 24 23 45 45 H 1.09009 * 110.37013 * 159.34413 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6365 0.0011 12 6 6.0170 -4.0079 0.0004 13 1 5.3583 -4.6496 -0.5847 14 6 6.0899 -4.5269 1.4379 15 6 6.6387 -5.9551 1.4372 16 6 8.0389 -5.9630 0.8206 17 6 7.9661 -5.4440 -0.6168 18 6 7.4173 -4.0158 -0.6162 19 1 8.0756 -3.3738 -0.0310 20 6 7.3439 -3.4970 -2.0537 21 1 6.9540 -2.4793 -2.0719 22 6 8.7359 -3.5550 -2.7218 23 6 8.5398 -4.5164 -3.9149 24 8 7.1271 -4.4564 -4.2088 25 6 6.4716 -4.4303 -2.9221 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6796 -0.8894 28 1 3.8745 -0.6807 0.8906 29 1 3.6580 -3.1505 0.8897 30 1 3.6586 -3.1501 -0.8903 31 1 5.8527 -2.1100 -0.7799 32 1 6.7485 -3.8851 2.0230 33 1 5.0924 -4.5208 1.8773 34 1 6.6902 -6.3250 2.4613 35 1 5.9804 -6.5971 0.8520 36 1 8.6973 -5.3210 1.4058 37 1 8.4302 -6.9803 0.8205 38 1 8.9637 -5.4500 -1.0563 39 1 7.3078 -6.0860 -1.2020 40 1 9.0326 -2.5666 -3.0726 41 1 9.4762 -3.9536 -2.0282 42 1 9.1207 -4.1792 -4.7734 43 1 8.8286 -5.5301 -3.6369 44 1 6.4413 -5.4310 -2.4913 45 1 5.4635 -4.0268 -3.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353243454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:47 Heat of formation + Delta-G solvation = -93.033954 kcal Electronic energy + Delta-G solvation = -21568.834473 eV Core-core repulsion = 18583.929633 eV Total energy + Delta-G solvation = -2984.904840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41485 -39.11173 -36.69771 -34.84126 -34.27154 -32.26881 -30.86662 -29.74277 -28.52539 -25.83570 -24.81547 -23.50799 -22.49520 -22.09708 -21.17343 -20.00890 -18.96681 -17.60018 -17.11424 -16.62188 -16.25443 -16.23740 -15.70844 -15.68424 -15.05864 -14.93288 -14.80525 -14.55223 -14.27181 -13.76723 -13.61421 -13.16932 -13.05788 -12.96803 -12.75631 -12.52170 -12.30198 -11.99696 -11.97348 -11.83253 -11.78693 -11.75766 -11.53937 -11.45301 -11.33762 -10.90481 -10.82203 -10.78698 -10.58220 -9.30365 -8.31728 -6.36453 1.34829 1.37183 1.50312 2.35160 3.02036 3.03872 3.23399 3.51531 3.68398 3.80102 3.91176 4.05085 4.18683 4.24649 4.27210 4.35834 4.37714 4.43657 4.53186 4.55940 4.58944 4.63155 4.65222 4.80549 4.85785 4.88968 4.92636 4.92984 5.06606 5.11217 5.16354 5.23774 5.28268 5.31942 5.34463 5.37721 5.44056 5.47069 5.59985 5.62621 5.86051 6.18291 6.25291 6.54908 6.72350 7.28588 8.85142 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.004897 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.815643 B = 5716.514102 C = 6571.322008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.248 1.248 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.003 4.003 10 C 0.090 3.910 11 N -0.690 5.690 12 C 0.090 3.910 13 H 0.030 0.970 14 C -0.106 4.106 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.067 4.067 19 H 0.086 0.914 20 C -0.122 4.122 21 H 0.072 0.928 22 C -0.143 4.143 23 C 0.038 3.962 24 O -0.404 6.404 25 C 0.044 3.956 26 H 0.267 0.733 27 H 0.016 0.984 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.339 0.661 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.878 -11.681 -2.405 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.171 1.171 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.039 4.039 11 N -0.322 5.322 12 C -0.019 4.019 13 H 0.048 0.952 14 C -0.145 4.145 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.086 4.086 19 H 0.104 0.896 20 C -0.141 4.141 21 H 0.090 0.910 22 C -0.180 4.180 23 C -0.038 4.038 24 O -0.324 6.324 25 C -0.033 4.033 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.159 0.841 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.676 -11.498 -1.937 26.392 hybrid contribution -1.003 0.609 -0.712 1.372 sum 22.673 -10.890 -2.649 25.292 Atomic orbital electron populations 1.70068 1.08312 1.28251 1.52511 1.25997 0.95612 1.03534 0.93908 0.85608 0.79475 0.78058 0.79204 1.19126 1.17116 1.20806 1.21402 0.91964 0.93165 1.50759 0.95169 1.19424 0.93539 0.94503 0.96612 1.21615 0.86753 0.97114 0.98432 1.60611 1.07068 1.14467 1.50091 1.21615 0.95257 0.88498 0.96561 0.95156 1.21509 1.00414 0.96794 0.95737 1.21533 0.97247 0.95330 1.01361 1.21514 0.96232 1.01818 0.95532 1.21722 1.01771 0.94194 0.97461 1.21210 0.95453 0.98343 0.93587 0.89602 1.22588 0.96605 0.99491 0.95388 0.90988 1.23011 0.96440 1.01034 0.97550 1.23629 0.81704 0.99707 0.98742 1.89105 1.19837 1.95462 1.27973 1.23625 0.96429 0.99825 0.83388 0.92407 0.96607 0.95881 0.92888 0.97085 0.84054 0.91580 0.94156 0.91159 0.92590 0.91382 0.90525 0.89601 0.92071 0.90432 0.88002 0.88176 0.90919 0.90725 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 45.45 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.53 -31.84 9.66 25.60 0.25 -31.59 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C 0.00 -0.15 4.30 29.85 0.13 -0.02 16 10 C 0.09 3.71 5.42 86.30 0.47 4.18 16 11 N -0.69 -22.36 6.31 -491.55 -3.10 -25.46 16 12 C 0.09 2.33 1.78 44.92 0.08 2.41 16 13 H 0.03 0.86 6.95 -2.39 -0.02 0.84 16 14 C -0.11 -2.62 5.43 30.60 0.17 -2.45 16 15 C -0.12 -2.15 5.92 30.59 0.18 -1.97 16 16 C -0.11 -1.61 5.92 30.59 0.18 -1.42 16 17 C -0.11 -1.67 4.64 30.59 0.14 -1.53 16 18 C -0.07 -1.28 1.63 -10.79 -0.02 -1.30 16 19 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 20 C -0.12 -2.45 2.74 -9.78 -0.03 -2.48 16 21 H 0.07 1.67 6.28 -2.39 -0.01 1.66 16 22 C -0.14 -2.14 6.19 31.61 0.20 -1.95 16 23 C 0.04 0.63 7.63 72.49 0.55 1.18 16 24 O -0.40 -10.16 11.65 -148.98 -1.74 -11.90 16 25 C 0.04 1.03 5.99 72.48 0.43 1.46 16 26 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 27 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 28 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 29 H 0.05 2.28 7.46 -2.39 -0.02 2.26 16 30 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 31 H 0.34 10.42 6.18 -89.69 -0.55 9.87 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.17 7.48 -2.39 -0.02 1.15 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.94 6.37 -2.38 -0.02 0.93 16 39 H 0.06 0.97 5.99 -2.39 -0.01 0.96 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.11 6.26 -2.39 -0.01 1.09 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.60 5.54 -2.39 -0.01 1.58 16 45 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -68.33 331.90 0.88 -67.45 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.34 Total: 17.79 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.20 Total: -34.63 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.80 Total: -86.04 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.74 Total: -11.90 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -68.33 0.88 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353243454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.585 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds