Wall clock time and date at job start Mon Mar 30 2020 07:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46963 * 299.99499 * 4 3 2 6 6 C 1.52996 * 109.47343 * 300.00258 * 5 4 3 7 7 C 1.53002 * 109.47454 * 180.02562 * 5 4 3 8 8 N 1.46497 * 109.46729 * 59.99938 * 7 5 4 9 9 C 1.34777 * 119.99886 * 180.02562 * 8 7 5 10 10 O 1.21289 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00346 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99914 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46821 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46922 * 120.00486 * 17 15 13 20 20 H 1.48501 * 109.47152 * 240.00312 * 17 15 13 21 21 C 1.52997 * 109.47092 * 60.00194 * 5 4 3 22 22 C 1.53002 * 109.46817 * 119.99912 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.09000 * 109.47437 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 31 31 H 1.09001 * 109.47372 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00175 * 6 5 4 33 33 H 1.09004 * 109.47368 * 59.99791 * 6 5 4 34 34 H 1.09001 * 109.47142 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.46838 * 300.00606 * 7 5 4 36 36 H 0.97003 * 120.00473 * 0.02562 * 8 7 5 37 37 H 1.09001 * 109.47066 * 299.99828 * 11 9 8 38 38 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 39 39 H 1.09001 * 109.47289 * 299.99690 * 12 11 9 40 40 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 41 41 H 0.96993 * 120.00442 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47375 * 180.02562 * 21 5 4 43 43 H 1.09002 * 109.47497 * 59.99850 * 21 5 4 44 44 H 1.09002 * 109.47075 * 299.99262 * 22 2 1 45 45 H 1.08996 * 109.47407 * 60.00219 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0804 0.7211 1.2484 6 6 3.5710 1.4422 2.4979 7 6 5.6105 0.7215 1.2482 8 7 6.0983 2.1029 1.2484 9 6 7.4233 2.3496 1.2477 10 8 8.2118 1.4280 1.2465 11 6 7.9252 3.7706 1.2485 12 6 9.4552 3.7711 1.2469 13 6 9.9571 5.1921 1.2471 14 1 9.2550 6.0127 1.2486 15 6 11.3126 5.4444 1.2463 16 7 12.1675 4.4451 1.2449 17 14 11.9347 7.2058 1.2472 18 1 10.7794 8.1388 1.2494 19 1 12.7606 7.4384 2.4592 20 1 12.7587 7.4404 0.0342 21 6 3.5704 -0.7214 1.2484 22 6 2.0399 -0.7213 1.2493 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.9334 2.4701 -0.0002 30 1 3.9330 0.9287 -0.8908 31 1 3.9342 0.9280 3.3877 32 1 3.9342 2.4698 2.4978 33 1 2.4809 1.4423 2.4983 34 1 5.9741 0.2072 2.1378 35 1 5.9738 0.2081 0.3579 36 1 5.4677 2.8400 1.2490 37 1 7.5612 4.2850 0.3591 38 1 7.5623 4.2836 2.1391 39 1 9.8197 3.2566 2.1360 40 1 9.8177 3.2582 0.3560 41 1 13.1211 4.6226 1.2439 42 1 3.9337 -1.2352 2.1385 43 1 3.9334 -1.2352 0.3583 44 1 1.6766 -0.2073 2.1393 45 1 1.6766 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360457507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:07 Heat of formation + Delta-G solvation = -86.899540 kcal Electronic energy + Delta-G solvation = -20698.280957 eV Core-core repulsion = 17713.642125 eV Total energy + Delta-G solvation = -2984.638832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26232 -38.70568 -35.36284 -33.41061 -32.74797 -31.05113 -30.89088 -28.50709 -27.25292 -25.57668 -23.96836 -23.04500 -21.48192 -20.59016 -19.58999 -18.62326 -16.93068 -15.96730 -15.56683 -15.42038 -14.90752 -14.77037 -14.46427 -14.37854 -14.09115 -13.77301 -13.53545 -12.97486 -12.66008 -12.50639 -12.19535 -12.16810 -12.13315 -11.84130 -11.58202 -11.50964 -11.14686 -11.11324 -11.00303 -10.92029 -10.56891 -10.37564 -10.31541 -10.14543 -9.92278 -9.62559 -9.12561 -8.94810 -8.66993 -8.29713 -5.93756 -3.97948 3.33675 3.34498 3.40784 3.44189 3.65863 4.33523 4.38135 4.46459 4.49708 4.75218 4.84041 4.93017 5.11287 5.13720 5.26161 5.29556 5.33222 5.41133 5.45849 5.49295 5.56559 5.62041 5.64176 5.77074 5.79193 5.81982 5.86765 5.90238 5.95649 5.96313 6.05583 6.13600 6.21563 6.27621 6.29642 6.33755 6.83021 6.94370 7.77697 7.90253 7.97486 8.10513 8.42011 8.86640 9.11312 9.65441 11.17288 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044803 B = 0.003049 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.805478 B = 9180.278094 C = 9499.295079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.110 4.110 5 C -0.070 4.070 6 C -0.145 4.145 7 C 0.130 3.870 8 N -0.741 5.741 9 C 0.508 3.492 10 O -0.537 6.537 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.107 4.107 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.122 -8.429 -0.844 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.147 4.147 5 C -0.070 4.070 6 C -0.203 4.203 7 C 0.005 3.995 8 N -0.396 5.396 9 C 0.296 3.704 10 O -0.412 6.412 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.145 4.145 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.337 -9.148 -0.842 26.013 hybrid contribution 0.128 1.257 -0.017 1.264 sum -24.209 -7.891 -0.859 25.477 Atomic orbital electron populations 1.21834 0.95510 1.01497 1.01652 1.21147 0.95124 0.96338 0.98531 1.21638 0.95480 0.96215 1.01928 1.21602 0.95319 1.00555 0.97268 1.20772 0.94031 0.96195 0.96048 1.21979 1.01196 1.00324 0.96762 1.21278 0.92008 0.84278 1.01902 1.46246 1.07675 1.07874 1.77850 1.21538 0.81117 0.93242 0.74509 1.90666 1.55228 1.47001 1.48327 1.21852 1.02542 0.90272 1.02342 1.18897 0.85885 0.96716 0.98595 1.21271 0.91717 0.92272 1.51120 0.92582 1.25034 0.97079 0.96977 0.95371 1.70008 1.01967 1.30519 1.50380 0.86541 0.78858 0.85024 0.77567 1.19757 1.21034 1.21027 1.21526 0.95507 0.95141 1.02308 1.21626 0.95304 1.00138 0.98045 0.92806 0.92823 0.92877 0.91339 0.92137 0.91620 0.91707 0.91719 0.92514 0.92524 0.91903 0.91957 0.92004 0.76999 0.90378 0.90378 0.95851 0.95849 0.93027 0.91655 0.91688 0.91614 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16 3 C -0.12 -0.84 4.93 -26.73 -0.13 -0.98 16 4 C -0.11 -0.95 4.56 -26.73 -0.12 -1.07 16 5 C -0.07 -0.64 0.53 -154.51 -0.08 -0.72 16 6 C -0.15 -1.24 7.61 37.16 0.28 -0.96 16 7 C 0.13 1.65 4.57 -4.04 -0.02 1.63 16 8 N -0.74 -10.61 4.96 -60.29 -0.30 -10.91 16 9 C 0.51 10.02 7.83 -10.99 -0.09 9.93 16 10 O -0.54 -13.04 15.98 5.55 0.09 -12.95 16 11 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 13 C -0.53 -15.12 9.11 -34.44 -0.31 -15.44 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.11 -0.88 4.73 -26.71 -0.13 -1.00 16 22 C -0.11 -0.80 4.93 -26.70 -0.13 -0.93 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 29 H 0.06 0.58 6.86 -51.93 -0.36 0.22 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 6.86 -51.93 -0.36 0.14 16 33 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 4.58 6.16 -40.82 -0.25 4.32 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -33.48 344.93 -8.49 -41.96 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.18 Total: -1.74 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.01 Total: -11.37 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.44 Total: -37.96 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.48 -8.49 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360457507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.938 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds