Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46963 * 299.99499 * 4 3 2 6 6 C 1.52996 * 109.47343 * 300.00258 * 5 4 3 7 7 C 1.53002 * 109.47454 * 180.02562 * 5 4 3 8 8 N 1.46497 * 109.46729 * 59.99938 * 7 5 4 9 9 C 1.34777 * 119.99886 * 180.02562 * 8 7 5 10 10 O 1.21289 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00346 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99914 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46821 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46922 * 120.00486 * 17 15 13 20 20 H 1.48501 * 109.47152 * 240.00312 * 17 15 13 21 21 C 1.52997 * 109.47092 * 60.00194 * 5 4 3 22 22 C 1.53002 * 109.46817 * 119.99912 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.09000 * 109.47437 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 31 31 H 1.09001 * 109.47372 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00175 * 6 5 4 33 33 H 1.09004 * 109.47368 * 59.99791 * 6 5 4 34 34 H 1.09001 * 109.47142 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.46838 * 300.00606 * 7 5 4 36 36 H 0.97003 * 120.00473 * 0.02562 * 8 7 5 37 37 H 1.09001 * 109.47066 * 299.99828 * 11 9 8 38 38 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 39 39 H 1.09001 * 109.47289 * 299.99690 * 12 11 9 40 40 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 41 41 H 0.96993 * 120.00442 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47375 * 180.02562 * 21 5 4 43 43 H 1.09002 * 109.47497 * 59.99850 * 21 5 4 44 44 H 1.09002 * 109.47075 * 299.99262 * 22 2 1 45 45 H 1.08996 * 109.47407 * 60.00219 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0804 0.7211 1.2484 6 6 3.5710 1.4422 2.4979 7 6 5.6105 0.7215 1.2482 8 7 6.0983 2.1029 1.2484 9 6 7.4233 2.3496 1.2477 10 8 8.2118 1.4280 1.2465 11 6 7.9252 3.7706 1.2485 12 6 9.4552 3.7711 1.2469 13 6 9.9571 5.1921 1.2471 14 1 9.2550 6.0127 1.2486 15 6 11.3126 5.4444 1.2463 16 7 12.1675 4.4451 1.2449 17 14 11.9347 7.2058 1.2472 18 1 10.7794 8.1388 1.2494 19 1 12.7606 7.4384 2.4592 20 1 12.7587 7.4404 0.0342 21 6 3.5704 -0.7214 1.2484 22 6 2.0399 -0.7213 1.2493 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.9334 2.4701 -0.0002 30 1 3.9330 0.9287 -0.8908 31 1 3.9342 0.9280 3.3877 32 1 3.9342 2.4698 2.4978 33 1 2.4809 1.4423 2.4983 34 1 5.9741 0.2072 2.1378 35 1 5.9738 0.2081 0.3579 36 1 5.4677 2.8400 1.2490 37 1 7.5612 4.2850 0.3591 38 1 7.5623 4.2836 2.1391 39 1 9.8197 3.2566 2.1360 40 1 9.8177 3.2582 0.3560 41 1 13.1211 4.6226 1.2439 42 1 3.9337 -1.2352 2.1385 43 1 3.9334 -1.2352 0.3583 44 1 1.6766 -0.2073 2.1393 45 1 1.6766 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360457507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -107.355712 kcal Electronic energy + Delta-G solvation = -20699.168003 eV Core-core repulsion = 17713.642125 eV Total energy + Delta-G solvation = -2985.525878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22723 -40.05713 -36.39596 -35.54495 -33.87403 -32.86660 -31.68084 -29.29073 -28.41267 -27.19943 -24.98529 -23.85159 -23.16963 -21.30269 -21.14603 -19.35089 -18.82150 -17.57761 -16.97673 -16.69912 -16.39352 -16.01820 -15.53433 -15.21411 -15.00886 -14.75625 -14.45958 -14.31793 -14.12192 -13.95984 -13.23638 -13.15496 -13.11003 -12.83301 -12.78894 -12.72258 -12.45367 -12.27143 -12.15492 -11.92586 -11.79050 -11.67620 -11.63781 -11.28346 -11.07030 -10.99179 -10.80504 -10.66419 -10.58124 -10.02694 -8.18088 -6.32225 1.42117 1.43764 1.57109 1.73664 2.29324 2.45932 3.14877 3.60063 3.70176 3.78389 4.08068 4.08694 4.20793 4.26872 4.40888 4.50266 4.52317 4.54019 4.60687 4.66251 4.72337 4.76303 4.86796 4.89989 4.92748 5.06593 5.08963 5.11463 5.15935 5.20719 5.23265 5.24900 5.32857 5.46413 5.48247 5.50311 5.53352 5.57876 5.63351 5.71171 5.85752 6.17786 6.62946 6.86687 7.36526 7.38734 8.94954 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044803 B = 0.003049 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.805478 B = 9180.278094 C = 9499.295079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.110 4.110 5 C -0.059 4.059 6 C -0.145 4.145 7 C 0.128 3.872 8 N -0.714 5.714 9 C 0.508 3.492 10 O -0.592 6.592 11 C -0.119 4.119 12 C 0.042 3.958 13 C -0.541 4.541 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.939 5.939 17 Si 0.975 3.025 18 H -0.252 1.252 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.107 4.107 22 C -0.109 4.109 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.413 0.587 37 H 0.104 0.896 38 H 0.104 0.896 39 H -0.019 1.019 40 H -0.019 1.019 41 H 0.263 0.737 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.750 -6.576 -0.701 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.148 4.148 4 C -0.148 4.148 5 C -0.060 4.060 6 C -0.202 4.202 7 C 0.004 3.996 8 N -0.368 5.368 9 C 0.297 3.703 10 O -0.472 6.472 11 C -0.159 4.159 12 C 0.004 3.996 13 C -0.579 4.579 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.145 4.145 22 C -0.146 4.146 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.000 1.000 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.049 -7.275 -0.700 28.019 hybrid contribution 0.920 0.602 -0.072 1.101 sum -26.129 -6.673 -0.772 26.979 Atomic orbital electron populations 1.21807 0.94614 1.01860 1.01977 1.21141 0.95833 0.95980 0.98167 1.21612 0.94072 0.96599 1.02523 1.21605 0.96590 1.00200 0.96389 1.20697 0.90950 0.97291 0.97013 1.21990 1.02310 1.00022 0.95874 1.21415 0.94726 0.82733 1.00694 1.45945 1.06027 1.09483 1.75310 1.21355 0.82462 0.92239 0.74274 1.90652 1.57054 1.48223 1.51319 1.21631 0.97819 0.91664 1.04781 1.18691 0.90660 0.95623 0.94624 1.21749 0.92491 0.93089 1.50587 0.90545 1.26167 0.97480 1.02300 0.94669 1.70186 1.02463 1.33648 1.51598 0.85254 0.78625 0.78687 0.77551 1.17524 1.20622 1.20619 1.21532 0.96685 0.94262 1.02047 1.21599 0.93927 1.00743 0.98353 0.92352 0.92631 0.92551 0.92002 0.91704 0.90849 0.91687 0.92666 0.92982 0.92448 0.90168 0.93152 0.93369 0.74868 0.87819 0.87785 1.00028 1.00043 0.92860 0.91773 0.92247 0.90993 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.11 16 3 C -0.11 -1.35 4.93 30.59 0.15 -1.20 16 4 C -0.11 -1.71 4.56 30.60 0.14 -1.57 16 5 C -0.06 -1.00 0.53 -52.18 -0.03 -1.03 16 6 C -0.14 -2.14 7.61 71.98 0.55 -1.59 16 7 C 0.13 3.25 4.57 86.38 0.39 3.64 16 8 N -0.71 -19.80 4.96 -463.06 -2.30 -22.10 16 9 C 0.51 20.26 7.83 87.66 0.69 20.95 16 10 O -0.59 -30.13 15.98 -3.06 -0.05 -30.18 16 11 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 12 C 0.04 2.37 4.26 29.85 0.13 2.50 16 13 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 14 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 15 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 16 N -0.94 -60.39 13.29 21.45 0.28 -60.10 16 17 Si 0.98 44.71 29.54 68.60 2.03 46.73 16 18 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 C -0.11 -1.63 4.73 30.61 0.14 -1.49 16 22 C -0.11 -1.29 4.93 30.61 0.15 -1.14 16 23 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.80 6.43 -2.39 -0.02 0.79 16 29 H 0.06 1.00 6.86 -2.39 -0.02 0.99 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.84 6.86 -2.39 -0.02 0.82 16 33 H 0.08 0.94 4.81 -2.39 -0.01 0.92 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.41 8.62 6.16 -92.71 -0.57 8.05 16 37 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 40 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.55 344.93 4.15 -71.41 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.37 Total: 12.79 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.81 Total: -18.55 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.01 Total: -82.20 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -75.55 4.15 -71.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360457507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.949 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds