Wall clock time and date at job start Mon Mar 30 2020 08:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.61944 * 2 1 4 4 C 1.55909 * 110.69680 * 236.73358 * 2 1 3 5 5 N 1.50338 * 106.24809 * 234.88402 * 4 2 1 6 6 C 1.46893 * 111.00203 * 214.76852 * 5 4 2 7 7 C 1.53004 * 109.47282 * 283.56052 * 6 5 4 8 8 C 1.52997 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.43367 * 102.70544 * 333.46097 * 5 4 2 19 19 H 1.09004 * 108.20728 * 296.66823 * 18 5 4 20 20 C 1.49463 * 130.09952 * 161.70121 * 18 5 4 21 21 O 1.45568 * 105.16265 * 212.22391 * 20 18 5 22 22 C 1.45889 * 109.02682 * 6.02917 * 21 20 18 23 23 C 1.51272 * 110.69377 * 123.07167 * 2 1 3 24 24 H 1.08996 * 111.76283 * 34.09214 * 23 2 1 25 25 H 1.09000 * 109.47432 * 296.92546 * 1 2 3 26 26 H 1.09003 * 109.47307 * 56.92273 * 1 2 3 27 27 H 1.09001 * 109.47041 * 176.92680 * 1 2 3 28 28 H 1.08995 * 109.47209 * 183.07990 * 3 2 1 29 29 H 1.09006 * 109.47153 * 303.07748 * 3 2 1 30 30 H 1.08994 * 109.47259 * 63.06949 * 3 2 1 31 31 H 1.09001 * 110.10613 * 115.69191 * 4 2 1 32 32 H 1.09005 * 110.10364 * 354.07809 * 4 2 1 33 33 H 1.09000 * 109.47487 * 163.56018 * 6 5 4 34 34 H 1.08998 * 109.47055 * 43.56308 * 6 5 4 35 35 H 1.08995 * 109.46638 * 59.99969 * 7 6 5 36 36 H 1.08998 * 109.46846 * 300.00422 * 7 6 5 37 37 H 1.09000 * 109.47849 * 59.99917 * 8 7 6 38 38 H 1.09007 * 109.47288 * 299.99511 * 8 7 6 39 39 H 1.09000 * 109.47211 * 59.99130 * 9 8 7 40 40 H 1.09007 * 109.46376 * 299.99672 * 9 8 7 41 41 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 42 42 H 1.09003 * 110.30471 * 331.15028 * 20 18 5 43 43 H 1.09006 * 110.30353 * 93.20578 * 20 18 5 44 44 H 1.09001 * 110.73295 * 144.14907 * 22 21 20 45 45 H 1.08997 * 110.73708 * 267.28220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0688 1.4320 0.0000 4 6 2.0810 -0.8000 -1.2195 5 7 3.0063 -1.8421 -0.6555 6 6 4.1414 -2.0814 -1.5567 7 6 3.6823 -2.9371 -2.7391 8 6 4.8647 -3.1868 -3.6773 9 6 4.4055 -4.0420 -4.8600 10 6 5.5703 -4.2886 -5.7839 11 1 6.5409 -3.8762 -5.5510 12 6 5.3954 -5.0354 -6.9295 13 7 4.2134 -5.5373 -7.2133 14 14 6.8374 -5.3344 -8.0787 15 1 7.5432 -6.5769 -7.6744 16 1 6.3397 -5.4785 -9.4704 17 1 7.7757 -4.1859 -8.0049 18 6 3.4424 -1.2450 0.5728 19 1 3.9961 -0.3373 0.3325 20 6 4.0697 -1.8693 1.7772 21 8 3.6028 -1.0752 2.9044 22 6 2.6202 -0.1070 2.4296 23 6 2.0645 -0.7722 1.1859 24 1 1.4231 -1.6156 1.4413 25 1 -0.3634 0.4653 0.9162 26 1 -0.3634 0.5609 -0.8611 27 1 -0.3633 -1.0262 -0.0551 28 1 3.1571 1.4107 -0.0552 29 1 1.6717 1.9696 -0.8612 30 1 1.7611 1.9360 0.9162 31 1 2.6285 -0.1350 -1.8874 32 1 1.2609 -1.2780 -1.7555 33 1 4.9311 -2.6028 -1.0158 34 1 4.5210 -1.1279 -1.9239 35 1 2.8926 -2.4156 -3.2799 36 1 3.3026 -3.8905 -2.3718 37 1 5.6542 -3.7084 -3.1362 38 1 5.2448 -2.2335 -4.0447 39 1 3.6162 -3.5201 -5.4010 40 1 4.0253 -4.9954 -4.4929 41 1 4.0902 -6.0624 -8.0195 42 1 3.7416 -2.9035 1.8814 43 1 5.1563 -1.8233 1.7045 44 1 1.8353 0.0414 3.1712 45 1 3.0998 0.8401 2.1825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384785867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:09 Heat of formation + Delta-G solvation = -44.994661 kcal Electronic energy + Delta-G solvation = -20992.458904 eV Core-core repulsion = 18009.637204 eV Total energy + Delta-G solvation = -2982.821700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45803 -37.49541 -35.68533 -33.94756 -32.20009 -30.42693 -28.94884 -28.25948 -27.70743 -25.90402 -24.01268 -22.97953 -21.45521 -20.54425 -19.93116 -18.82994 -17.34038 -16.21027 -15.97479 -15.32913 -15.21539 -14.91713 -14.42132 -14.27940 -13.98651 -13.74726 -13.59409 -13.24470 -12.75610 -12.73992 -12.31427 -12.21281 -11.94373 -11.85984 -11.72343 -11.39082 -11.24594 -10.93101 -10.82753 -10.71266 -10.55378 -10.46582 -10.38273 -10.28419 -9.83054 -9.61869 -9.25009 -8.99472 -8.51003 -8.31900 -5.97019 -3.99292 3.33157 3.35436 3.39217 3.42623 3.58206 3.91058 4.40991 4.45863 4.48676 4.72570 4.84618 4.91069 5.01872 5.03939 5.23542 5.26839 5.35491 5.36451 5.38475 5.41166 5.48351 5.53623 5.55778 5.62416 5.66471 5.74216 5.85763 5.87435 5.89604 5.97389 6.05789 6.13316 6.25590 6.42493 6.51804 6.72852 6.87732 6.97461 7.04893 7.23631 7.71849 7.87735 8.04058 8.46821 9.08208 9.64550 11.14319 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.003273 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.691632 B = 8552.435354 C = 9006.700955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.143 4.143 4 C 0.044 3.956 5 N -0.485 5.485 6 C 0.043 3.957 7 C -0.109 4.109 8 C -0.110 4.110 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.016 3.984 19 H 0.042 0.958 20 C 0.075 3.925 21 O -0.386 6.386 22 C 0.062 3.938 23 C -0.131 4.131 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 13.453 18.244 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.200 4.200 4 C -0.083 4.083 5 N -0.209 5.209 6 C -0.084 4.084 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.015 4.015 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.094 4.094 19 H 0.060 0.940 20 C -0.002 4.002 21 O -0.305 6.305 22 C -0.014 4.014 23 C -0.149 4.149 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.577 12.808 18.407 23.369 hybrid contribution 1.193 0.534 -1.205 1.777 sum -5.384 13.342 17.202 22.426 Atomic orbital electron populations 1.21830 0.93280 1.02411 1.01829 1.20855 0.96285 0.94801 0.93963 1.21935 1.00818 0.95013 1.02232 1.24007 0.96857 0.91975 0.95502 1.64229 1.15821 1.38887 1.01946 1.22518 0.92068 0.99319 0.94539 1.21582 0.99333 0.99397 0.94396 1.21608 0.95957 1.00011 0.97204 1.19085 0.96430 0.94520 0.91510 1.21289 0.96045 1.32109 1.06407 0.92799 1.25031 0.95654 0.95900 0.97939 1.69967 1.22046 1.35451 1.26083 0.86615 0.82744 0.78581 0.80178 1.20664 1.21242 1.19928 1.22664 0.96615 0.97087 0.93071 0.93995 1.21907 0.98344 0.95667 0.84285 1.89338 1.59623 1.50323 1.31262 1.22715 0.91359 0.91931 0.95429 1.23127 0.97421 1.00049 0.94352 0.88209 0.92498 0.92288 0.91929 0.92646 0.92006 0.92115 0.92573 0.89307 0.90994 0.94611 0.92662 0.91644 0.93480 0.93760 0.96738 0.96603 0.93051 0.90346 0.90371 0.89426 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.39 37.15 0.31 -0.75 16 2 C -0.06 -0.52 0.90 -153.83 -0.14 -0.66 16 3 C -0.14 -1.12 7.26 37.16 0.27 -0.85 16 4 C 0.04 0.49 5.47 -0.34 0.00 0.49 16 5 N -0.48 -6.23 5.25 -223.18 -1.17 -7.40 16 6 C 0.04 0.61 4.80 -3.83 -0.02 0.60 16 7 C -0.11 -1.88 5.36 -26.73 -0.14 -2.03 16 8 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 C 0.02 0.18 2.24 -68.56 -0.15 0.03 16 19 H 0.04 0.49 6.35 -51.93 -0.33 0.16 16 20 C 0.07 0.83 7.65 35.41 0.27 1.10 16 21 O -0.39 -4.56 11.59 -35.23 -0.41 -4.97 16 22 C 0.06 0.57 6.92 36.45 0.25 0.82 16 23 C -0.13 -1.27 2.75 -89.43 -0.25 -1.52 16 24 H 0.10 1.06 8.01 -51.93 -0.42 0.65 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.47 6.77 -51.93 -0.35 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 31 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 32 H 0.09 1.03 7.75 -51.93 -0.40 0.63 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.04 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.05 0.96 7.76 -51.93 -0.40 0.55 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.56 6.74 -51.93 -0.35 0.21 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -30.71 344.92 -9.39 -40.10 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -8.44 Total: -4.65 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.28 Total: -18.56 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: -0.43 Total: -34.02 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.41 Total: -4.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.71 -9.39 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.893 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds