Wall clock time and date at job start Mon Mar 30 2020 08:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.61944 * 2 1 4 4 C 1.55909 * 110.69680 * 236.73358 * 2 1 3 5 5 N 1.50338 * 106.24809 * 234.88402 * 4 2 1 6 6 C 1.46893 * 111.00203 * 214.76852 * 5 4 2 7 7 C 1.53004 * 109.47282 * 283.56052 * 6 5 4 8 8 C 1.52997 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.43367 * 102.70544 * 333.46097 * 5 4 2 19 19 H 1.09004 * 108.20728 * 296.66823 * 18 5 4 20 20 C 1.49463 * 130.09952 * 161.70121 * 18 5 4 21 21 O 1.45568 * 105.16265 * 212.22391 * 20 18 5 22 22 C 1.45889 * 109.02682 * 6.02917 * 21 20 18 23 23 C 1.51272 * 110.69377 * 123.07167 * 2 1 3 24 24 H 1.08996 * 111.76283 * 34.09214 * 23 2 1 25 25 H 1.09000 * 109.47432 * 296.92546 * 1 2 3 26 26 H 1.09003 * 109.47307 * 56.92273 * 1 2 3 27 27 H 1.09001 * 109.47041 * 176.92680 * 1 2 3 28 28 H 1.08995 * 109.47209 * 183.07990 * 3 2 1 29 29 H 1.09006 * 109.47153 * 303.07748 * 3 2 1 30 30 H 1.08994 * 109.47259 * 63.06949 * 3 2 1 31 31 H 1.09001 * 110.10613 * 115.69191 * 4 2 1 32 32 H 1.09005 * 110.10364 * 354.07809 * 4 2 1 33 33 H 1.09000 * 109.47487 * 163.56018 * 6 5 4 34 34 H 1.08998 * 109.47055 * 43.56308 * 6 5 4 35 35 H 1.08995 * 109.46638 * 59.99969 * 7 6 5 36 36 H 1.08998 * 109.46846 * 300.00422 * 7 6 5 37 37 H 1.09000 * 109.47849 * 59.99917 * 8 7 6 38 38 H 1.09007 * 109.47288 * 299.99511 * 8 7 6 39 39 H 1.09000 * 109.47211 * 59.99130 * 9 8 7 40 40 H 1.09007 * 109.46376 * 299.99672 * 9 8 7 41 41 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 42 42 H 1.09003 * 110.30471 * 331.15028 * 20 18 5 43 43 H 1.09006 * 110.30353 * 93.20578 * 20 18 5 44 44 H 1.09001 * 110.73295 * 144.14907 * 22 21 20 45 45 H 1.08997 * 110.73708 * 267.28220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0688 1.4320 0.0000 4 6 2.0810 -0.8000 -1.2195 5 7 3.0063 -1.8421 -0.6555 6 6 4.1414 -2.0814 -1.5567 7 6 3.6823 -2.9371 -2.7391 8 6 4.8647 -3.1868 -3.6773 9 6 4.4055 -4.0420 -4.8600 10 6 5.5703 -4.2886 -5.7839 11 1 6.5409 -3.8762 -5.5510 12 6 5.3954 -5.0354 -6.9295 13 7 4.2134 -5.5373 -7.2133 14 14 6.8374 -5.3344 -8.0787 15 1 7.5432 -6.5769 -7.6744 16 1 6.3397 -5.4785 -9.4704 17 1 7.7757 -4.1859 -8.0049 18 6 3.4424 -1.2450 0.5728 19 1 3.9961 -0.3373 0.3325 20 6 4.0697 -1.8693 1.7772 21 8 3.6028 -1.0752 2.9044 22 6 2.6202 -0.1070 2.4296 23 6 2.0645 -0.7722 1.1859 24 1 1.4231 -1.6156 1.4413 25 1 -0.3634 0.4653 0.9162 26 1 -0.3634 0.5609 -0.8611 27 1 -0.3633 -1.0262 -0.0551 28 1 3.1571 1.4107 -0.0552 29 1 1.6717 1.9696 -0.8612 30 1 1.7611 1.9360 0.9162 31 1 2.6285 -0.1350 -1.8874 32 1 1.2609 -1.2780 -1.7555 33 1 4.9311 -2.6028 -1.0158 34 1 4.5210 -1.1279 -1.9239 35 1 2.8926 -2.4156 -3.2799 36 1 3.3026 -3.8905 -2.3718 37 1 5.6542 -3.7084 -3.1362 38 1 5.2448 -2.2335 -4.0447 39 1 3.6162 -3.5201 -5.4010 40 1 4.0253 -4.9954 -4.4929 41 1 4.0902 -6.0624 -8.0195 42 1 3.7416 -2.9035 1.8814 43 1 5.1563 -1.8233 1.7045 44 1 1.8353 0.0414 3.1712 45 1 3.0998 0.8401 2.1825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384785867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:08 Heat of formation + Delta-G solvation = -64.065077 kcal Electronic energy + Delta-G solvation = -20993.285859 eV Core-core repulsion = 18009.637204 eV Total energy + Delta-G solvation = -2983.648655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30377 -38.42323 -36.94992 -35.52681 -33.98816 -31.52287 -30.12401 -29.39639 -28.33895 -27.25840 -25.53269 -23.85059 -22.91715 -21.75372 -21.36107 -19.61172 -18.42725 -18.18400 -16.88019 -16.55530 -16.43062 -16.09019 -15.91627 -15.35386 -14.76076 -14.71814 -14.54373 -14.39967 -14.08700 -13.92146 -13.62701 -13.47968 -13.14041 -12.85502 -12.82248 -12.71381 -12.51252 -12.36649 -12.25703 -12.13187 -11.80485 -11.57579 -11.47941 -11.36436 -11.33987 -11.22818 -10.88949 -10.64986 -10.56065 -9.50424 -8.20400 -6.32079 1.39136 1.40854 1.51952 2.39962 2.46862 2.79287 3.01381 3.12277 3.65242 3.69840 3.96437 3.97340 4.02319 4.16390 4.19784 4.21598 4.32209 4.45096 4.52048 4.54131 4.64423 4.69882 4.71248 4.75096 4.79668 4.83643 4.84570 4.89743 5.00139 5.02387 5.10478 5.17351 5.17823 5.26459 5.31589 5.34113 5.42763 5.53924 5.61378 5.75713 5.83527 5.85980 6.07395 6.25073 6.85388 7.37331 8.91515 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.003273 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.691632 B = 8552.435354 C = 9006.700955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.140 4.140 4 C 0.039 3.961 5 N -0.497 5.497 6 C 0.054 3.946 7 C -0.097 4.097 8 C -0.097 4.097 9 C 0.024 3.976 10 C -0.545 4.545 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.262 1.262 18 C 0.011 3.989 19 H 0.043 0.957 20 C 0.075 3.925 21 O -0.404 6.404 22 C 0.062 3.938 23 C -0.120 4.120 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.050 0.950 39 H -0.011 1.011 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 14.855 18.991 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.088 4.088 5 N -0.221 5.221 6 C -0.074 4.074 7 C -0.135 4.135 8 C -0.135 4.135 9 C -0.013 4.013 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.099 4.099 19 H 0.061 0.939 20 C -0.002 4.002 21 O -0.323 6.323 22 C -0.014 4.014 23 C -0.139 4.139 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.008 0.992 40 H 0.007 0.993 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.908 14.223 19.172 24.592 hybrid contribution 0.926 0.077 -1.432 1.708 sum -4.982 14.299 17.739 23.323 Atomic orbital electron populations 1.21813 0.92246 1.02155 1.02890 1.20829 0.97035 0.95107 0.92227 1.21922 1.00316 0.94126 1.03371 1.24083 0.96326 0.91812 0.96595 1.64135 1.15458 1.40152 1.02375 1.22294 0.92609 0.98875 0.93614 1.21381 0.97700 0.99517 0.94930 1.21407 0.97253 0.99046 0.95775 1.19011 0.95270 0.93917 0.93145 1.21739 0.96866 1.32437 1.07265 0.92189 1.26020 0.98746 0.95429 0.99822 1.70104 1.24437 1.36077 1.26843 0.85432 0.78965 0.78942 0.77616 1.19726 1.20660 1.18664 1.22662 0.97826 0.96946 0.92480 0.93863 1.21910 0.98776 0.95381 0.84134 1.89317 1.60323 1.50936 1.31739 1.22881 0.91376 0.91679 0.95446 1.23082 0.96237 0.99866 0.94740 0.89245 0.90984 0.91728 0.92833 0.93340 0.91490 0.90463 0.92800 0.90129 0.90617 0.94045 0.93079 0.92774 0.93024 0.93167 0.99238 0.99306 0.92762 0.90926 0.89693 0.87625 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.39 71.98 0.60 -1.24 16 2 C -0.05 -0.84 0.90 -51.74 -0.05 -0.88 16 3 C -0.14 -1.86 7.26 71.98 0.52 -1.34 16 4 C 0.04 0.84 5.47 86.64 0.47 1.32 16 5 N -0.50 -12.48 5.25 -860.01 -4.51 -17.00 16 6 C 0.05 1.50 4.80 86.31 0.41 1.92 16 7 C -0.10 -3.39 5.36 30.59 0.16 -3.22 16 8 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 13 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 14 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 18 C 0.01 0.24 2.24 46.24 0.10 0.35 16 19 H 0.04 0.94 6.35 -2.39 -0.02 0.92 16 20 C 0.07 1.59 7.65 70.85 0.54 2.13 16 21 O -0.40 -8.92 11.59 -148.98 -1.73 -10.65 16 22 C 0.06 1.00 6.92 71.52 0.50 1.49 16 23 C -0.12 -2.15 2.75 -10.02 -0.03 -2.18 16 24 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.72 6.77 -2.39 -0.02 0.71 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.79 7.49 -2.39 -0.02 0.77 16 31 H 0.05 1.20 7.14 -2.39 -0.02 1.18 16 32 H 0.08 1.87 7.75 -2.38 -0.02 1.85 16 33 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.04 1.11 7.66 -2.39 -0.02 1.09 16 35 H 0.05 1.80 7.76 -2.39 -0.02 1.78 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.09 6.74 -2.39 -0.02 1.08 16 Total: -1.00 -65.99 344.92 1.24 -64.75 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.92 Total: 9.14 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.25 Total: -35.38 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -4.23 Total: -74.74 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.73 Total: -10.65 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.99 1.24 -64.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.683 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds