Wall clock time and date at job start Mon Mar 30 2020 08:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.26328 * 2 1 4 4 C 1.54310 * 110.29890 * 237.83413 * 2 1 3 5 5 N 1.47366 * 104.81925 * 216.21234 * 4 2 1 6 6 C 1.46902 * 111.47080 * 158.99077 * 5 4 2 7 7 C 1.53002 * 109.46892 * 52.86973 * 6 5 4 8 8 C 1.52998 * 109.47277 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47277 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47021 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00357 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00094 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00164 * 180.02562 * 12 10 9 14 14 Si 1.86809 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46952 * 89.99807 * 14 12 10 16 16 H 1.48489 * 109.47086 * 210.00015 * 14 12 10 17 17 H 1.48498 * 109.47050 * 330.00019 * 14 12 10 18 18 C 1.48446 * 105.37181 * 38.49710 * 5 4 2 19 19 H 1.09002 * 112.82906 * 86.65889 * 18 5 4 20 20 C 1.54123 * 108.93302 * 212.81033 * 18 5 4 21 21 O 1.43684 * 107.44448 * 113.73133 * 20 18 5 22 22 C 1.44349 * 106.97975 * 333.12172 * 21 20 18 23 23 C 1.53864 * 110.29691 * 122.05812 * 2 1 3 24 24 H 1.08994 * 113.39015 * 357.54891 * 23 2 1 25 25 H 1.08998 * 109.47628 * 297.93998 * 1 2 3 26 26 H 1.09008 * 109.47118 * 57.94026 * 1 2 3 27 27 H 1.09001 * 109.47512 * 177.94169 * 1 2 3 28 28 H 1.09001 * 109.46884 * 190.25705 * 3 2 1 29 29 H 1.08993 * 109.47101 * 310.25242 * 3 2 1 30 30 H 1.08995 * 109.47418 * 70.25926 * 3 2 1 31 31 H 1.09004 * 110.41894 * 334.49024 * 4 2 1 32 32 H 1.08998 * 110.41911 * 96.82370 * 4 2 1 33 33 H 1.09000 * 109.46962 * 172.86551 * 6 5 4 34 34 H 1.08999 * 109.47826 * 292.87240 * 6 5 4 35 35 H 1.09000 * 109.47164 * 300.00090 * 7 6 5 36 36 H 1.09000 * 109.47369 * 59.99806 * 7 6 5 37 37 H 1.09000 * 109.46749 * 299.99683 * 8 7 6 38 38 H 1.08997 * 109.47603 * 59.99588 * 8 7 6 39 39 H 1.09000 * 109.46972 * 299.99546 * 9 8 7 40 40 H 1.09000 * 109.47369 * 59.99780 * 9 8 7 41 41 H 0.97004 * 119.99780 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.85486 * 233.20388 * 20 18 5 43 43 H 1.09001 * 109.85424 * 354.26317 * 20 18 5 44 44 H 1.09001 * 110.58375 * 281.58975 * 22 21 20 45 45 H 1.08995 * 110.58846 * 158.66945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0598 1.4353 0.0000 4 6 2.0653 -0.7705 -1.2251 5 7 3.2741 -1.4589 -0.7387 6 6 3.6246 -2.5997 -1.5953 7 6 3.7138 -2.1362 -3.0507 8 6 4.0782 -3.3244 -3.9430 9 6 4.1668 -2.8610 -5.3984 10 6 4.5264 -4.0313 -6.2772 11 1 4.6771 -5.0078 -5.8412 12 6 4.6630 -3.8554 -7.6379 13 7 4.9763 -4.8768 -8.4048 14 14 4.4030 -2.1662 -8.3920 15 1 5.6935 -1.4319 -8.4183 16 1 3.8906 -2.3163 -9.7776 17 1 3.4183 -1.4076 -7.5795 18 6 2.9443 -1.9083 0.6371 19 1 2.4506 -2.8799 0.6577 20 6 4.2232 -1.8684 1.4962 21 8 4.0383 -0.8541 2.4970 22 6 3.1088 0.1083 1.9552 23 6 2.0637 -0.7660 1.2230 24 1 1.2764 -1.1291 1.8835 25 1 -0.3634 0.4815 0.9078 26 1 -0.3634 0.5455 -0.8710 27 1 -0.3634 -1.0270 -0.0369 28 1 3.1343 1.4259 -0.1830 29 1 1.5628 2.0061 -0.7843 30 1 1.8601 1.8964 0.9672 31 1 1.3325 -1.5031 -1.5636 32 1 2.3110 -0.0794 -2.0314 33 1 4.5869 -3.0058 -1.2837 34 1 2.8588 -3.3702 -1.5058 35 1 2.7515 -1.7300 -3.3623 36 1 4.4796 -1.3657 -3.1404 37 1 5.0404 -3.7309 -3.6315 38 1 3.3122 -4.0946 -3.8533 39 1 3.2044 -2.4548 -5.7096 40 1 4.9327 -2.0907 -5.4886 41 1 5.0727 -4.7529 -9.3621 42 1 4.3787 -2.8357 1.9738 43 1 5.0813 -1.6200 0.8715 44 1 3.6116 0.7734 1.2532 45 1 2.6380 0.6790 2.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384785878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:12 Heat of formation + Delta-G solvation = -54.530432 kcal Electronic energy + Delta-G solvation = -21199.322925 eV Core-core repulsion = 18216.087723 eV Total energy + Delta-G solvation = -2983.235202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07515 -37.38749 -35.85287 -34.01568 -32.20753 -30.49118 -29.11738 -28.38138 -27.49832 -26.09208 -23.80576 -22.84531 -21.27410 -20.45385 -20.11941 -19.02194 -16.89122 -16.64445 -16.42753 -15.27921 -15.12299 -14.78339 -14.47001 -14.17908 -14.06452 -13.84000 -13.70307 -13.10136 -12.82314 -12.67349 -12.37932 -12.13185 -11.96708 -11.87713 -11.77451 -11.32533 -11.21528 -11.07268 -10.87224 -10.79954 -10.74040 -10.60122 -10.44360 -9.88720 -9.68835 -9.68281 -9.48843 -9.15155 -8.54301 -8.52046 -6.03023 -4.00690 3.31576 3.38627 3.42609 3.73288 3.82157 4.04433 4.33093 4.46492 4.54817 4.80869 4.88521 4.91336 5.05251 5.11453 5.21215 5.23850 5.31395 5.34283 5.37876 5.47564 5.48060 5.55533 5.60607 5.62964 5.70055 5.74658 5.78517 5.81395 5.91199 5.98441 5.99903 6.09334 6.15460 6.32308 6.61481 6.65049 6.73707 6.87291 6.91134 7.05622 7.33581 7.46589 7.81897 8.56079 9.02225 9.59936 11.10610 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.003720 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.381041 B = 7525.953932 C = 8033.827049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.046 3.954 5 N -0.508 5.508 6 C 0.047 3.953 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.013 4.013 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.030 3.970 19 H 0.075 0.925 20 C 0.061 3.939 21 O -0.383 6.383 22 C 0.050 3.950 23 C -0.118 4.118 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 11.476 21.252 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.082 4.082 5 N -0.232 5.232 6 C -0.081 4.081 7 C -0.157 4.157 8 C -0.139 4.139 9 C -0.051 4.051 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.545 5.545 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.079 4.079 19 H 0.093 0.907 20 C -0.016 4.016 21 O -0.302 6.302 22 C -0.026 4.026 23 C -0.137 4.137 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.451 11.772 21.257 25.416 hybrid contribution -0.922 0.057 -0.885 1.279 sum -8.373 11.829 20.373 25.002 Atomic orbital electron populations 1.21894 0.93901 1.01890 1.02018 1.21191 0.95397 0.95789 0.93944 1.22001 1.01777 0.94347 1.01602 1.23023 0.90957 0.97312 0.96873 1.64790 1.32849 1.24586 1.01019 1.22409 1.00749 0.91129 0.93807 1.21752 1.01669 0.99864 0.92442 1.21420 1.00502 0.95836 0.96164 1.19561 0.96210 0.97076 0.92218 1.21186 1.47064 0.95898 0.91673 0.91134 1.25050 0.94622 0.96650 0.97280 1.69923 1.48975 1.30485 1.05076 0.86761 0.78973 0.85099 0.78348 1.20280 1.21435 1.19068 1.24019 0.95511 0.97613 0.90756 0.90687 1.23117 0.97070 0.91789 0.89637 1.88818 1.65170 1.36477 1.39707 1.23905 0.89228 0.91943 0.97550 1.23448 0.97899 0.95414 0.96904 0.88733 0.92411 0.92191 0.92629 0.91224 0.92490 0.92482 0.93647 0.89526 0.90513 0.94700 0.92568 0.91648 0.92772 0.93073 0.96843 0.97102 0.92788 0.90268 0.90907 0.90177 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.33 37.15 0.31 -0.76 16 2 C -0.06 -0.55 1.01 -153.38 -0.15 -0.71 16 3 C -0.14 -1.13 7.09 37.16 0.26 -0.87 16 4 C 0.05 0.51 4.13 -2.88 -0.01 0.50 16 5 N -0.51 -6.05 4.82 -221.78 -1.07 -7.12 16 6 C 0.05 0.62 5.07 -3.82 -0.02 0.60 16 7 C -0.12 -1.89 4.89 -26.73 -0.13 -2.02 16 8 C -0.10 -1.99 5.15 -26.73 -0.14 -2.12 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 14 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.03 0.32 3.34 -64.84 -0.22 0.10 16 19 H 0.08 0.78 7.86 -51.93 -0.41 0.37 16 20 C 0.06 0.67 7.45 37.74 0.28 0.95 16 21 O -0.38 -4.59 11.52 -35.23 -0.41 -5.00 16 22 C 0.05 0.48 5.82 38.04 0.22 0.70 16 23 C -0.12 -1.08 3.72 -87.85 -0.33 -1.41 16 24 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 28 H 0.07 0.64 6.63 -51.93 -0.34 0.29 16 29 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 30 H 0.06 0.39 7.27 -51.93 -0.38 0.01 16 31 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 32 H 0.09 1.00 7.43 -51.93 -0.39 0.62 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.46 7.91 -51.93 -0.41 0.05 16 35 H 0.06 0.87 6.83 -51.93 -0.35 0.52 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.08 0.79 5.22 -51.93 -0.27 0.51 16 45 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -30.99 338.65 -9.08 -40.07 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -8.34 Total: -3.80 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -0.47 Total: -19.07 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.30 Total: -34.65 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.41 Total: -5.00 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.99 -9.08 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds