Wall clock time and date at job start Mon Mar 30 2020 08:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.26328 * 2 1 4 4 C 1.54310 * 110.29890 * 237.83413 * 2 1 3 5 5 N 1.47366 * 104.81925 * 216.21234 * 4 2 1 6 6 C 1.46902 * 111.47080 * 158.99077 * 5 4 2 7 7 C 1.53002 * 109.46892 * 52.86973 * 6 5 4 8 8 C 1.52998 * 109.47277 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47277 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47021 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00357 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00094 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00164 * 180.02562 * 12 10 9 14 14 Si 1.86809 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46952 * 89.99807 * 14 12 10 16 16 H 1.48489 * 109.47086 * 210.00015 * 14 12 10 17 17 H 1.48498 * 109.47050 * 330.00019 * 14 12 10 18 18 C 1.48446 * 105.37181 * 38.49710 * 5 4 2 19 19 H 1.09002 * 112.82906 * 86.65889 * 18 5 4 20 20 C 1.54123 * 108.93302 * 212.81033 * 18 5 4 21 21 O 1.43684 * 107.44448 * 113.73133 * 20 18 5 22 22 C 1.44349 * 106.97975 * 333.12172 * 21 20 18 23 23 C 1.53864 * 110.29691 * 122.05812 * 2 1 3 24 24 H 1.08994 * 113.39015 * 357.54891 * 23 2 1 25 25 H 1.08998 * 109.47628 * 297.93998 * 1 2 3 26 26 H 1.09008 * 109.47118 * 57.94026 * 1 2 3 27 27 H 1.09001 * 109.47512 * 177.94169 * 1 2 3 28 28 H 1.09001 * 109.46884 * 190.25705 * 3 2 1 29 29 H 1.08993 * 109.47101 * 310.25242 * 3 2 1 30 30 H 1.08995 * 109.47418 * 70.25926 * 3 2 1 31 31 H 1.09004 * 110.41894 * 334.49024 * 4 2 1 32 32 H 1.08998 * 110.41911 * 96.82370 * 4 2 1 33 33 H 1.09000 * 109.46962 * 172.86551 * 6 5 4 34 34 H 1.08999 * 109.47826 * 292.87240 * 6 5 4 35 35 H 1.09000 * 109.47164 * 300.00090 * 7 6 5 36 36 H 1.09000 * 109.47369 * 59.99806 * 7 6 5 37 37 H 1.09000 * 109.46749 * 299.99683 * 8 7 6 38 38 H 1.08997 * 109.47603 * 59.99588 * 8 7 6 39 39 H 1.09000 * 109.46972 * 299.99546 * 9 8 7 40 40 H 1.09000 * 109.47369 * 59.99780 * 9 8 7 41 41 H 0.97004 * 119.99780 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.85486 * 233.20388 * 20 18 5 43 43 H 1.09001 * 109.85424 * 354.26317 * 20 18 5 44 44 H 1.09001 * 110.58375 * 281.58975 * 22 21 20 45 45 H 1.08995 * 110.58846 * 158.66945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0598 1.4353 0.0000 4 6 2.0653 -0.7705 -1.2251 5 7 3.2741 -1.4589 -0.7387 6 6 3.6246 -2.5997 -1.5953 7 6 3.7138 -2.1362 -3.0507 8 6 4.0782 -3.3244 -3.9430 9 6 4.1668 -2.8610 -5.3984 10 6 4.5264 -4.0313 -6.2772 11 1 4.6771 -5.0078 -5.8412 12 6 4.6630 -3.8554 -7.6379 13 7 4.9763 -4.8768 -8.4048 14 14 4.4030 -2.1662 -8.3920 15 1 5.6935 -1.4319 -8.4183 16 1 3.8906 -2.3163 -9.7776 17 1 3.4183 -1.4076 -7.5795 18 6 2.9443 -1.9083 0.6371 19 1 2.4506 -2.8799 0.6577 20 6 4.2232 -1.8684 1.4962 21 8 4.0383 -0.8541 2.4970 22 6 3.1088 0.1083 1.9552 23 6 2.0637 -0.7660 1.2230 24 1 1.2764 -1.1291 1.8835 25 1 -0.3634 0.4815 0.9078 26 1 -0.3634 0.5455 -0.8710 27 1 -0.3634 -1.0270 -0.0369 28 1 3.1343 1.4259 -0.1830 29 1 1.5628 2.0061 -0.7843 30 1 1.8601 1.8964 0.9672 31 1 1.3325 -1.5031 -1.5636 32 1 2.3110 -0.0794 -2.0314 33 1 4.5869 -3.0058 -1.2837 34 1 2.8588 -3.3702 -1.5058 35 1 2.7515 -1.7300 -3.3623 36 1 4.4796 -1.3657 -3.1404 37 1 5.0404 -3.7309 -3.6315 38 1 3.3122 -4.0946 -3.8533 39 1 3.2044 -2.4548 -5.7096 40 1 4.9327 -2.0907 -5.4886 41 1 5.0727 -4.7529 -9.3621 42 1 4.3787 -2.8357 1.9738 43 1 5.0813 -1.6200 0.8715 44 1 3.6116 0.7734 1.2532 45 1 2.6380 0.6790 2.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384785878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:11 Heat of formation + Delta-G solvation = -74.231171 kcal Electronic energy + Delta-G solvation = -21200.177213 eV Core-core repulsion = 18216.087723 eV Total energy + Delta-G solvation = -2984.089490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87975 -38.31224 -36.99228 -35.53622 -34.05953 -31.63394 -30.24342 -29.37533 -28.16657 -27.33100 -25.26553 -23.62146 -22.61738 -21.71773 -21.37945 -19.84363 -18.84006 -17.69066 -17.28728 -16.39751 -16.36285 -15.99606 -15.70848 -15.31184 -15.12391 -14.78168 -14.63163 -14.41042 -14.16180 -13.85015 -13.56135 -13.51489 -13.03303 -12.80910 -12.72350 -12.57398 -12.39647 -12.31812 -12.14917 -11.78359 -11.74583 -11.56070 -11.52907 -11.41380 -11.36527 -11.20378 -11.17098 -10.77486 -10.49809 -9.47022 -8.30739 -6.35012 1.35010 1.36659 1.49037 2.35416 2.86785 3.01005 3.04626 3.24816 3.59474 3.80478 4.02637 4.10360 4.12542 4.13797 4.16675 4.35021 4.37012 4.43475 4.50742 4.60763 4.65159 4.70158 4.77073 4.80969 4.82935 4.84172 4.89137 4.92242 4.96001 5.06427 5.12063 5.15429 5.17344 5.21284 5.25001 5.35068 5.47273 5.54703 5.62060 5.66703 5.79058 6.03931 6.04453 6.27979 6.73280 7.29920 8.86302 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.003720 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.381041 B = 7525.953932 C = 8033.827049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.138 4.138 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.054 3.946 7 C -0.106 4.106 8 C -0.094 4.094 9 C -0.011 4.011 10 C -0.536 4.536 11 H 0.029 0.971 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.246 1.246 18 C 0.028 3.972 19 H 0.079 0.921 20 C 0.061 3.939 21 O -0.401 6.401 22 C 0.047 3.953 23 C -0.112 4.112 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.266 0.734 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 13.827 22.437 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.073 4.073 7 C -0.143 4.143 8 C -0.132 4.132 9 C -0.049 4.049 10 C -0.574 4.574 11 H 0.048 0.952 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.170 1.170 18 C -0.081 4.081 19 H 0.097 0.903 20 C -0.016 4.016 21 O -0.320 6.320 22 C -0.029 4.029 23 C -0.131 4.131 24 H 0.125 0.875 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.709 14.127 22.468 27.932 hybrid contribution -0.499 -0.771 -1.230 1.535 sum -9.208 13.357 21.238 26.725 Atomic orbital electron populations 1.21872 0.92738 1.01935 1.02851 1.21169 0.96228 0.95815 0.92560 1.21977 1.00907 0.93954 1.02648 1.23079 0.90466 0.97208 0.97799 1.64760 1.33662 1.23909 1.01455 1.22230 1.00932 0.91658 0.92527 1.21552 1.01697 0.97854 0.93234 1.21287 1.00208 0.97288 0.94461 1.19528 0.96210 0.95221 0.93902 1.21565 1.47019 0.96011 0.92774 0.95218 1.26075 0.94191 1.01389 0.97838 1.70079 1.50394 1.33279 1.05637 0.85610 0.79755 0.79436 0.77558 1.19109 1.20849 1.16978 1.24064 0.95774 0.98424 0.89844 0.90303 1.23114 0.96797 0.92131 0.89555 1.88801 1.65882 1.37097 1.40252 1.24046 0.88970 0.91672 0.98177 1.23468 0.97845 0.94696 0.97045 0.87496 0.90988 0.92026 0.92944 0.92493 0.92062 0.90975 0.94213 0.90197 0.90571 0.94589 0.92056 0.91761 0.93379 0.93591 0.96365 0.96492 0.92484 0.89291 0.92156 0.90527 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.33 71.98 0.60 -1.12 16 2 C -0.06 -0.88 1.01 -51.45 -0.05 -0.93 16 3 C -0.14 -1.90 7.09 71.98 0.51 -1.39 16 4 C 0.04 0.86 4.13 86.66 0.36 1.22 16 5 N -0.51 -11.52 4.82 -855.57 -4.13 -15.65 16 6 C 0.05 1.39 5.07 86.30 0.44 1.83 16 7 C -0.11 -3.20 4.89 30.59 0.15 -3.05 16 8 C -0.09 -3.68 5.15 30.59 0.16 -3.52 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.54 -31.72 9.66 25.60 0.25 -31.48 16 11 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 12 C 0.00 0.09 5.47 84.66 0.46 0.55 16 13 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 14 Si 0.95 44.93 27.47 68.60 1.88 46.81 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 18 C 0.03 0.54 3.34 45.92 0.15 0.69 16 19 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 20 C 0.06 1.27 7.45 72.36 0.54 1.81 16 21 O -0.40 -9.01 11.52 -148.98 -1.72 -10.72 16 22 C 0.05 0.80 5.82 72.56 0.42 1.22 16 23 C -0.11 -1.79 3.72 -9.00 -0.03 -1.82 16 24 H 0.11 1.48 7.87 -2.39 -0.02 1.47 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 28 H 0.06 0.94 6.63 -2.39 -0.02 0.93 16 29 H 0.06 0.79 8.12 -2.39 -0.02 0.78 16 30 H 0.07 0.78 7.27 -2.39 -0.02 0.76 16 31 H 0.04 0.85 7.65 -2.38 -0.02 0.83 16 32 H 0.08 1.73 7.43 -2.39 -0.02 1.71 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 0.91 7.91 -2.39 -0.02 0.89 16 35 H 0.06 1.80 6.83 -2.39 -0.02 1.79 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 40 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 41 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.39 7.88 -2.39 -0.02 1.37 16 44 H 0.08 1.36 5.22 -2.39 -0.01 1.35 16 45 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 Total: -1.00 -67.04 338.65 1.28 -65.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.87 Total: 10.81 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.07 Total: -36.41 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.83 Total: -76.25 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -1.72 Total: -10.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -67.04 1.28 -65.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.470 kcal (2) G-P(sol) polarization free energy of solvation -67.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds