Wall clock time and date at job start Mon Mar 30 2020 08:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.26228 * 2 1 4 4 C 1.54247 * 109.39057 * 237.34949 * 2 1 3 5 5 N 1.48365 * 104.83887 * 265.83696 * 4 2 1 6 6 C 1.46894 * 111.00202 * 201.37448 * 5 4 2 7 7 C 1.53001 * 109.47413 * 286.21322 * 6 5 4 8 8 C 1.52991 * 109.47865 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47657 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47411 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99980 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00056 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00175 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00151 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46976 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47434 * 119.99770 * 14 12 10 17 17 H 1.48499 * 109.47297 * 240.00214 * 14 12 10 18 18 C 1.48449 * 104.86484 * 321.30971 * 5 4 2 19 19 H 1.09000 * 112.83107 * 274.20465 * 18 5 4 20 20 C 1.54130 * 108.31127 * 148.52933 * 18 5 4 21 21 O 1.45313 * 106.61686 * 246.66593 * 20 18 5 22 22 C 1.44347 * 107.28290 * 26.45169 * 21 20 18 23 23 C 1.53866 * 110.30106 * 122.06335 * 2 1 3 24 24 H 1.09000 * 112.83038 * 239.96746 * 23 2 1 25 25 H 1.09004 * 109.46923 * 290.11015 * 1 2 3 26 26 H 1.08999 * 109.47475 * 50.10963 * 1 2 3 27 27 H 1.08998 * 109.47040 * 170.11711 * 1 2 3 28 28 H 1.08998 * 109.47097 * 182.05901 * 3 2 1 29 29 H 1.08993 * 109.47377 * 302.05958 * 3 2 1 30 30 H 1.09004 * 109.46955 * 62.06972 * 3 2 1 31 31 H 1.08997 * 109.75464 * 147.24465 * 4 2 1 32 32 H 1.09004 * 110.81631 * 24.96817 * 4 2 1 33 33 H 1.08997 * 109.47482 * 166.21307 * 6 5 4 34 34 H 1.09000 * 109.47256 * 46.21050 * 6 5 4 35 35 H 1.09007 * 109.46780 * 59.99567 * 7 6 5 36 36 H 1.09006 * 109.47004 * 300.00710 * 7 6 5 37 37 H 1.09009 * 109.47141 * 300.00050 * 8 7 6 38 38 H 1.09008 * 109.46798 * 59.99608 * 8 7 6 39 39 H 1.09000 * 109.46807 * 300.00047 * 9 8 7 40 40 H 1.08998 * 109.47351 * 59.99952 * 9 8 7 41 41 H 0.96998 * 120.00436 * 179.97438 * 13 12 10 42 42 H 1.09006 * 109.85638 * 5.97390 * 20 18 5 43 43 H 1.09005 * 109.85619 * 127.03162 * 20 18 5 44 44 H 1.08998 * 110.58680 * 201.51486 * 22 21 20 45 45 H 1.08995 * 110.71947 * 78.65890 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0598 1.4353 0.0000 4 6 2.0421 -0.7850 -1.2251 5 7 2.2664 -2.1641 -0.7260 6 6 3.2037 -2.8914 -1.5922 7 6 2.5023 -3.2702 -2.8981 8 6 3.4786 -4.0272 -3.8006 9 6 2.7769 -4.4066 -5.1061 10 6 3.7388 -5.1517 -5.9953 11 1 4.7494 -5.3366 -5.6623 12 6 3.3284 -5.5983 -7.2335 13 7 2.0973 -5.3745 -7.6384 14 14 4.5204 -6.5225 -8.3354 15 1 5.8337 -6.6431 -7.6526 16 1 3.9832 -7.8775 -8.6193 17 1 4.6924 -5.7810 -9.6105 18 6 2.8281 -1.9892 0.6370 19 1 3.9097 -1.8542 0.6346 20 6 2.3754 -3.1805 1.5038 21 8 1.4817 -2.6425 2.5154 22 6 0.8915 -1.4425 1.9719 23 6 2.0638 -0.7661 1.2230 24 1 2.6821 -0.1470 1.8730 25 1 -0.3633 0.3534 0.9651 26 1 -0.3634 0.6590 -0.7885 27 1 -0.3633 -1.0124 -0.1764 28 1 3.1491 1.4205 -0.0369 29 1 1.6740 1.9651 -0.8709 30 1 1.7341 1.9429 0.9080 31 1 2.9782 -0.3506 -1.5759 32 1 1.2994 -0.7854 -2.0230 33 1 3.5402 -3.7956 -1.0850 34 1 4.0624 -2.2570 -1.8119 35 1 2.1657 -2.3660 -3.4053 36 1 1.6434 -3.9045 -2.6785 37 1 4.3371 -3.3925 -4.0202 38 1 3.8155 -4.9315 -3.2935 39 1 1.9187 -5.0415 -4.8861 40 1 2.4397 -3.5027 -5.6134 41 1 1.8086 -5.6883 -8.5096 42 1 1.8484 -3.9083 0.8866 43 1 3.2416 -3.6481 1.9719 44 1 0.5257 -0.7991 2.7720 45 1 0.0857 -1.6882 1.2804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384785879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:15 Heat of formation + Delta-G solvation = -58.741007 kcal Electronic energy + Delta-G solvation = -21092.633258 eV Core-core repulsion = 18109.215472 eV Total energy + Delta-G solvation = -2983.417786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93012 -37.13562 -35.73834 -33.93514 -32.16849 -30.30143 -28.92032 -28.19843 -27.44404 -25.82323 -23.80811 -22.78286 -21.37857 -20.48050 -20.02726 -19.05026 -16.80252 -16.33829 -16.15159 -15.19936 -14.95070 -14.74150 -14.40644 -14.34744 -13.94182 -13.82198 -13.61151 -13.02021 -12.78823 -12.39181 -12.23945 -12.03806 -11.91412 -11.75741 -11.66336 -11.17937 -11.14493 -10.92190 -10.83050 -10.78210 -10.52857 -10.45760 -10.43052 -10.34853 -9.65044 -9.61964 -9.25470 -8.98669 -8.53899 -8.32386 -5.97311 -3.99488 3.32020 3.39345 3.43544 3.74647 3.87213 4.08988 4.36835 4.47928 4.58838 4.85478 4.92324 4.94450 5.09372 5.16526 5.25217 5.30925 5.38231 5.38406 5.42552 5.53193 5.57205 5.60443 5.66369 5.67339 5.74890 5.80652 5.84828 5.89046 5.96137 6.03538 6.10036 6.18630 6.24183 6.49498 6.64637 6.80630 6.92577 6.96613 7.03323 7.22861 7.71923 7.87534 8.03835 8.46691 9.08258 9.64438 11.14065 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.003370 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.581770 B = 8307.434153 C = 8687.857054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.138 4.138 4 C 0.043 3.957 5 N -0.502 5.502 6 C 0.045 3.955 7 C -0.109 4.109 8 C -0.109 4.109 9 C 0.021 3.979 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.027 3.973 19 H 0.074 0.926 20 C 0.061 3.939 21 O -0.386 6.386 22 C 0.052 3.948 23 C -0.115 4.115 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 12.566 19.230 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.085 4.085 5 N -0.227 5.227 6 C -0.083 4.083 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.082 4.082 19 H 0.092 0.908 20 C -0.016 4.016 21 O -0.306 6.306 22 C -0.024 4.024 23 C -0.135 4.135 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.937 12.114 19.291 22.861 hybrid contribution 1.546 0.025 -1.068 1.879 sum -0.391 12.139 18.223 21.899 Atomic orbital electron populations 1.22024 0.93724 1.02543 1.01532 1.21173 0.96424 0.94788 0.93981 1.21864 1.00762 0.94898 1.02032 1.23241 1.00476 0.87960 0.96824 1.65392 1.41959 1.14266 1.01037 1.22442 0.93358 0.97784 0.94732 1.21592 0.99382 1.00479 0.93288 1.21602 0.97507 0.98094 0.97539 1.19086 0.95680 0.96384 0.90439 1.21326 0.98012 1.35437 1.00994 0.92745 1.25033 0.95154 0.96299 0.98051 1.69978 1.16574 1.46914 1.20079 0.86563 0.81338 0.79643 0.80614 1.19776 1.21006 1.21049 1.24000 0.97893 0.95105 0.91187 0.90839 1.23419 0.93462 0.95386 0.89324 1.89047 1.60936 1.41255 1.39315 1.23812 0.95479 0.85702 0.97406 1.23419 0.97239 0.95991 0.96806 0.88881 0.92604 0.92488 0.91144 0.92701 0.92191 0.92360 0.93723 0.89428 0.90997 0.94738 0.92711 0.91704 0.93757 0.93490 0.96600 0.96766 0.93110 0.90513 0.90187 0.89758 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.04 37.16 0.26 -0.95 16 2 C -0.06 -0.58 1.01 -153.41 -0.16 -0.73 16 3 C -0.14 -1.07 8.36 37.16 0.31 -0.76 16 4 C 0.04 0.49 4.93 -2.36 -0.01 0.48 16 5 N -0.50 -6.28 4.70 -220.97 -1.04 -7.32 16 6 C 0.04 0.62 4.82 -3.83 -0.02 0.60 16 7 C -0.11 -1.87 5.32 -26.74 -0.14 -2.02 16 8 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 14 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.03 0.30 3.27 -64.84 -0.21 0.09 16 19 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 20 C 0.06 0.70 7.55 37.75 0.29 0.98 16 21 O -0.39 -4.85 11.56 -35.23 -0.41 -5.25 16 22 C 0.05 0.53 5.89 38.04 0.22 0.75 16 23 C -0.12 -1.10 3.70 -87.86 -0.33 -1.43 16 24 H 0.09 0.81 7.84 -51.93 -0.41 0.40 16 25 H 0.05 0.41 7.32 -51.93 -0.38 0.03 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.07 0.69 6.64 -51.93 -0.34 0.35 16 28 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.52 7.49 -51.93 -0.39 0.13 16 32 H 0.09 1.06 7.53 -51.93 -0.39 0.67 16 33 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.48 7.79 -51.93 -0.40 0.07 16 35 H 0.05 0.95 7.42 -51.92 -0.39 0.56 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.83 5.29 -51.93 -0.27 0.56 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -30.67 343.83 -9.43 -40.10 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -8.41 Total: -4.25 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.47 Total: -18.73 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.30 Total: -33.92 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.41 Total: -5.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.67 -9.43 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.643 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds