Wall clock time and date at job start Mon Mar 30 2020 08:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.26228 * 2 1 4 4 C 1.54247 * 109.39057 * 237.34949 * 2 1 3 5 5 N 1.48365 * 104.83887 * 265.83696 * 4 2 1 6 6 C 1.46894 * 111.00202 * 201.37448 * 5 4 2 7 7 C 1.53001 * 109.47413 * 286.21322 * 6 5 4 8 8 C 1.52991 * 109.47865 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47657 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47411 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99980 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00056 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00175 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00151 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46976 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47434 * 119.99770 * 14 12 10 17 17 H 1.48499 * 109.47297 * 240.00214 * 14 12 10 18 18 C 1.48449 * 104.86484 * 321.30971 * 5 4 2 19 19 H 1.09000 * 112.83107 * 274.20465 * 18 5 4 20 20 C 1.54130 * 108.31127 * 148.52933 * 18 5 4 21 21 O 1.45313 * 106.61686 * 246.66593 * 20 18 5 22 22 C 1.44347 * 107.28290 * 26.45169 * 21 20 18 23 23 C 1.53866 * 110.30106 * 122.06335 * 2 1 3 24 24 H 1.09000 * 112.83038 * 239.96746 * 23 2 1 25 25 H 1.09004 * 109.46923 * 290.11015 * 1 2 3 26 26 H 1.08999 * 109.47475 * 50.10963 * 1 2 3 27 27 H 1.08998 * 109.47040 * 170.11711 * 1 2 3 28 28 H 1.08998 * 109.47097 * 182.05901 * 3 2 1 29 29 H 1.08993 * 109.47377 * 302.05958 * 3 2 1 30 30 H 1.09004 * 109.46955 * 62.06972 * 3 2 1 31 31 H 1.08997 * 109.75464 * 147.24465 * 4 2 1 32 32 H 1.09004 * 110.81631 * 24.96817 * 4 2 1 33 33 H 1.08997 * 109.47482 * 166.21307 * 6 5 4 34 34 H 1.09000 * 109.47256 * 46.21050 * 6 5 4 35 35 H 1.09007 * 109.46780 * 59.99567 * 7 6 5 36 36 H 1.09006 * 109.47004 * 300.00710 * 7 6 5 37 37 H 1.09009 * 109.47141 * 300.00050 * 8 7 6 38 38 H 1.09008 * 109.46798 * 59.99608 * 8 7 6 39 39 H 1.09000 * 109.46807 * 300.00047 * 9 8 7 40 40 H 1.08998 * 109.47351 * 59.99952 * 9 8 7 41 41 H 0.96998 * 120.00436 * 179.97438 * 13 12 10 42 42 H 1.09006 * 109.85638 * 5.97390 * 20 18 5 43 43 H 1.09005 * 109.85619 * 127.03162 * 20 18 5 44 44 H 1.08998 * 110.58680 * 201.51486 * 22 21 20 45 45 H 1.08995 * 110.71947 * 78.65890 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0598 1.4353 0.0000 4 6 2.0421 -0.7850 -1.2251 5 7 2.2664 -2.1641 -0.7260 6 6 3.2037 -2.8914 -1.5922 7 6 2.5023 -3.2702 -2.8981 8 6 3.4786 -4.0272 -3.8006 9 6 2.7769 -4.4066 -5.1061 10 6 3.7388 -5.1517 -5.9953 11 1 4.7494 -5.3366 -5.6623 12 6 3.3284 -5.5983 -7.2335 13 7 2.0973 -5.3745 -7.6384 14 14 4.5204 -6.5225 -8.3354 15 1 5.8337 -6.6431 -7.6526 16 1 3.9832 -7.8775 -8.6193 17 1 4.6924 -5.7810 -9.6105 18 6 2.8281 -1.9892 0.6370 19 1 3.9097 -1.8542 0.6346 20 6 2.3754 -3.1805 1.5038 21 8 1.4817 -2.6425 2.5154 22 6 0.8915 -1.4425 1.9719 23 6 2.0638 -0.7661 1.2230 24 1 2.6821 -0.1470 1.8730 25 1 -0.3633 0.3534 0.9651 26 1 -0.3634 0.6590 -0.7885 27 1 -0.3633 -1.0124 -0.1764 28 1 3.1491 1.4205 -0.0369 29 1 1.6740 1.9651 -0.8709 30 1 1.7341 1.9429 0.9080 31 1 2.9782 -0.3506 -1.5759 32 1 1.2994 -0.7854 -2.0230 33 1 3.5402 -3.7956 -1.0850 34 1 4.0624 -2.2570 -1.8119 35 1 2.1657 -2.3660 -3.4053 36 1 1.6434 -3.9045 -2.6785 37 1 4.3371 -3.3925 -4.0202 38 1 3.8155 -4.9315 -3.2935 39 1 1.9187 -5.0415 -4.8861 40 1 2.4397 -3.5027 -5.6134 41 1 1.8086 -5.6883 -8.5096 42 1 1.8484 -3.9083 0.8866 43 1 3.2416 -3.6481 1.9719 44 1 0.5257 -0.7991 2.7720 45 1 0.0857 -1.6882 1.2804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384785879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:14 Heat of formation + Delta-G solvation = -77.375852 kcal Electronic energy + Delta-G solvation = -21093.441326 eV Core-core repulsion = 18109.215472 eV Total energy + Delta-G solvation = -2984.225854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77876 -38.10935 -36.95781 -35.55183 -33.96220 -31.41607 -30.05632 -29.33605 -28.16110 -27.21451 -25.35622 -23.60803 -22.84626 -21.70366 -21.39066 -19.87589 -18.44369 -17.63207 -17.17996 -16.52938 -16.37584 -15.92520 -15.65098 -15.30633 -15.07971 -14.65420 -14.52428 -14.37865 -14.00907 -13.69710 -13.59318 -13.46139 -12.90355 -12.80198 -12.74098 -12.56892 -12.46727 -12.28315 -12.20567 -12.08328 -11.73899 -11.58145 -11.53080 -11.34549 -11.30580 -11.25280 -10.97321 -10.56877 -10.51311 -9.51515 -8.20722 -6.32340 1.39059 1.39513 1.53006 2.40170 2.86303 2.98212 3.12072 3.25795 3.58753 3.80265 4.02185 4.10837 4.13224 4.13996 4.21961 4.35804 4.38242 4.49877 4.54016 4.60659 4.64719 4.70203 4.77788 4.82626 4.84510 4.86430 4.89192 4.94994 4.96190 5.06532 5.15799 5.18966 5.23431 5.26714 5.34514 5.35216 5.46969 5.54070 5.73672 5.78029 5.85847 6.00808 6.04005 6.24879 6.85383 7.37181 8.91419 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.003370 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.581770 B = 8307.434153 C = 8687.857054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.134 4.134 4 C 0.039 3.961 5 N -0.513 5.513 6 C 0.056 3.944 7 C -0.098 4.098 8 C -0.096 4.096 9 C 0.023 3.977 10 C -0.544 4.544 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.027 3.973 19 H 0.083 0.917 20 C 0.060 3.940 21 O -0.405 6.405 22 C 0.048 3.952 23 C -0.108 4.108 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.051 0.949 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.263 0.737 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 13.341 20.323 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.058 4.058 3 C -0.192 4.192 4 C -0.089 4.089 5 N -0.238 5.238 6 C -0.072 4.072 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.014 4.014 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.082 4.082 19 H 0.101 0.899 20 C -0.017 4.017 21 O -0.324 6.324 22 C -0.027 4.027 23 C -0.127 4.127 24 H 0.128 0.872 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.597 12.898 20.400 24.143 hybrid contribution 1.060 -0.215 -1.412 1.779 sum 0.464 12.683 18.988 22.839 Atomic orbital electron populations 1.21997 0.93387 1.01651 1.02574 1.21153 0.96667 0.95393 0.92582 1.21840 1.00748 0.93706 1.02880 1.23284 1.00161 0.87772 0.97645 1.65313 1.41787 1.14978 1.01684 1.22213 0.93247 0.98466 0.93290 1.21390 0.98298 0.99421 0.94456 1.21399 0.97790 0.98836 0.95398 1.19014 0.94977 0.94500 0.92902 1.21767 0.98635 1.35910 1.01868 0.92171 1.26023 0.97063 0.97169 0.99773 1.70113 1.18673 1.47940 1.20779 0.85380 0.79094 0.78115 0.78341 1.18505 1.20319 1.20279 1.24053 0.98535 0.95688 0.89924 0.89884 1.23432 0.93611 0.95360 0.89268 1.89029 1.61285 1.42249 1.39854 1.23948 0.95435 0.85318 0.98031 1.23439 0.96916 0.95490 0.96866 0.87240 0.90965 0.92198 0.92864 0.92636 0.92120 0.90830 0.93790 0.90826 0.90453 0.94118 0.93273 0.92941 0.93153 0.93006 0.99342 0.99328 0.92775 0.92191 0.88822 0.87784 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.04 71.98 0.51 -1.69 16 2 C -0.06 -0.95 1.01 -51.47 -0.05 -1.00 16 3 C -0.13 -1.74 8.36 71.98 0.60 -1.14 16 4 C 0.04 0.86 4.93 86.44 0.43 1.29 16 5 N -0.51 -12.49 4.70 -853.02 -4.01 -16.50 16 6 C 0.06 1.52 4.82 86.30 0.42 1.94 16 7 C -0.10 -3.39 5.32 30.59 0.16 -3.23 16 8 C -0.10 -4.01 5.15 30.59 0.16 -3.86 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 11 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 12 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 13 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 14 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 C 0.03 0.54 3.27 45.92 0.15 0.69 16 19 H 0.08 1.56 8.01 -2.39 -0.02 1.54 16 20 C 0.06 1.32 7.55 72.36 0.55 1.86 16 21 O -0.40 -9.63 11.56 -148.98 -1.72 -11.35 16 22 C 0.05 0.89 5.89 72.56 0.43 1.32 16 23 C -0.11 -1.82 3.70 -9.00 -0.03 -1.85 16 24 H 0.11 1.54 7.84 -2.39 -0.02 1.52 16 25 H 0.07 0.90 7.32 -2.39 -0.02 0.88 16 26 H 0.06 0.90 8.13 -2.39 -0.02 0.89 16 27 H 0.05 1.03 6.64 -2.39 -0.02 1.02 16 28 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.97 7.49 -2.39 -0.02 0.95 16 32 H 0.07 1.81 7.53 -2.39 -0.02 1.79 16 33 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.04 1.06 7.79 -2.39 -0.02 1.05 16 35 H 0.05 1.74 7.42 -2.38 -0.02 1.72 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 37 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.06 1.50 7.86 -2.38 -0.02 1.48 16 43 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.44 5.29 -2.39 -0.01 1.42 16 Total: -1.00 -66.22 343.83 1.65 -64.57 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.92 Total: 9.66 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.15 Total: -35.48 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.73 Total: -74.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.72 Total: -11.35 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.22 1.65 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384785879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.806 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds