Wall clock time and date at job start Mon Mar 30 2020 07:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 108.56541 * 2 1 4 4 C 1.51787 * 108.61554 * 117.93584 * 2 1 3 5 5 C 1.53064 * 110.74157 * 187.92576 * 4 2 1 6 6 C 1.51421 * 108.49373 * 275.08461 * 5 4 2 7 7 O 1.21290 * 119.89313 * 251.21142 * 6 5 4 8 8 N 1.33376 * 120.21970 * 71.23049 * 6 5 4 9 9 C 1.46497 * 119.78410 * 180.28521 * 8 6 5 10 10 C 1.53002 * 109.47214 * 269.97734 * 9 8 6 11 11 C 1.52998 * 109.47358 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47358 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47161 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99628 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99696 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00439 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47288 * 90.00116 * 17 15 13 19 19 H 1.48508 * 109.47162 * 210.00092 * 17 15 13 20 20 H 1.48496 * 109.46832 * 329.99900 * 17 15 13 21 21 C 1.47192 * 120.42536 * 0.26718 * 8 6 5 22 22 C 1.51974 * 108.55286 * 242.30673 * 2 1 3 23 23 H 1.09005 * 109.46505 * 302.06659 * 1 2 3 24 24 H 1.09000 * 109.47366 * 62.06372 * 1 2 3 25 25 H 1.08992 * 109.47453 * 182.06712 * 1 2 3 26 26 H 1.09002 * 109.47187 * 179.56030 * 3 2 1 27 27 H 1.09001 * 109.47204 * 299.55850 * 3 2 1 28 28 H 1.09002 * 109.47227 * 59.55778 * 3 2 1 29 29 H 1.08998 * 109.22503 * 67.59864 * 4 2 1 30 30 H 1.09000 * 109.19215 * 308.22554 * 4 2 1 31 31 H 1.08999 * 109.63299 * 155.38353 * 5 4 2 32 32 H 1.08998 * 109.80039 * 34.88061 * 5 4 2 33 33 H 1.08993 * 109.47503 * 29.97937 * 9 8 6 34 34 H 1.09007 * 109.46967 * 149.97942 * 9 8 6 35 35 H 1.09001 * 109.47178 * 300.00147 * 10 9 8 36 36 H 1.09001 * 109.46848 * 60.00637 * 10 9 8 37 37 H 1.09006 * 109.47101 * 300.00384 * 11 10 9 38 38 H 1.09007 * 109.47178 * 59.99991 * 11 10 9 39 39 H 1.08993 * 109.47051 * 300.00133 * 12 11 10 40 40 H 1.09001 * 109.46848 * 60.00291 * 12 11 10 41 41 H 0.97004 * 120.00274 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.60552 * 47.81258 * 21 8 6 43 43 H 1.09000 * 109.60486 * 168.14822 * 21 8 6 44 44 H 1.08998 * 109.43818 * 51.56021 * 22 2 1 45 45 H 1.09003 * 109.07308 * 292.21485 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0172 1.4504 0.0000 4 6 2.0146 -0.6739 1.2708 5 6 3.5312 -0.5282 1.4173 6 6 4.1983 -1.6395 0.6346 7 8 4.7465 -2.5480 1.2224 8 7 4.1855 -1.6227 -0.6989 9 6 4.8285 -2.7061 -1.4466 10 6 6.2919 -2.3455 -1.7100 11 6 6.9632 -3.4766 -2.4914 12 6 8.4268 -3.1163 -2.7543 13 6 9.0882 -4.2308 -3.5234 14 1 8.5213 -5.1082 -3.7977 15 6 10.4171 -4.1303 -3.8768 16 7 10.9942 -5.1026 -4.5484 17 14 11.3979 -2.6131 -3.4018 18 1 12.0244 -2.8249 -2.0722 19 1 12.4564 -2.3707 -4.4148 20 1 10.4926 -1.4376 -3.3408 21 6 3.5291 -0.5228 -1.4242 22 6 2.0136 -0.6696 -1.2757 23 1 -0.3632 0.5456 0.8710 24 1 -0.3634 0.4814 -0.9079 25 1 -0.3634 -1.0269 0.0371 26 1 3.1070 1.4676 0.0079 27 1 1.6523 1.9562 -0.8939 28 1 1.6393 1.9606 0.8860 29 1 1.7574 -1.7325 1.2362 30 1 1.5253 -0.2138 2.1293 31 1 3.8066 -0.6047 2.4692 32 1 3.8489 0.4378 1.0249 33 1 4.7801 -3.6270 -0.8657 34 1 4.3126 -2.8481 -2.3964 35 1 6.3402 -1.4245 -2.2910 36 1 6.8077 -2.2035 -0.7603 37 1 6.9148 -4.3979 -1.9108 38 1 6.4473 -3.6182 -3.4412 39 1 8.4755 -2.1950 -3.3346 40 1 8.9424 -2.9750 -1.8043 41 1 11.9290 -5.0318 -4.7975 42 1 3.8469 0.4322 -1.0058 43 1 3.7992 -0.5679 -2.4793 44 1 1.5232 -0.2110 -2.1344 45 1 1.7577 -1.7286 -1.2412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385182462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:12 Heat of formation + Delta-G solvation = -85.421406 kcal Electronic energy + Delta-G solvation = -21004.040274 eV Core-core repulsion = 18019.465539 eV Total energy + Delta-G solvation = -2984.574735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70583 -38.91679 -37.36470 -35.86674 -34.26612 -32.59497 -31.46143 -29.54877 -28.16985 -26.91561 -25.17747 -24.72862 -23.26962 -21.83405 -19.76326 -19.55075 -18.88057 -18.13553 -17.47753 -16.40107 -16.18052 -16.02330 -15.90865 -15.70800 -14.89554 -14.63910 -14.53188 -14.22341 -13.91582 -13.80828 -13.66265 -13.51474 -12.94679 -12.87577 -12.72592 -12.64844 -12.44410 -12.33928 -12.28556 -12.02676 -11.77720 -11.63782 -11.46332 -11.40692 -11.35174 -11.28227 -11.22674 -10.78594 -10.67079 -9.64514 -8.31456 -6.35678 1.33899 1.35360 1.47875 1.66707 2.06548 2.34631 3.03619 3.50080 3.72850 3.78278 3.84057 4.03458 4.04625 4.20977 4.31357 4.34390 4.43577 4.49126 4.52077 4.65599 4.69636 4.74930 4.80124 4.81864 4.90827 4.91542 5.01609 5.05926 5.09189 5.09951 5.15312 5.16229 5.20950 5.23946 5.44388 5.45526 5.51056 5.59442 5.61441 5.61951 5.65861 6.27043 6.47846 6.72180 7.21904 7.29064 8.85595 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.003396 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.051103 B = 8242.230484 C = 8280.169853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.153 4.153 4 C -0.096 4.096 5 C -0.136 4.136 6 C 0.501 3.499 7 O -0.607 6.607 8 N -0.601 5.601 9 C 0.116 3.884 10 C -0.118 4.118 11 C -0.093 4.093 12 C -0.011 4.011 13 C -0.535 4.535 14 H 0.031 0.969 15 C 0.001 3.999 16 N -0.952 5.952 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.245 1.245 21 C 0.095 3.905 22 C -0.124 4.124 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.447 18.862 9.198 32.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.210 4.210 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.291 3.709 7 O -0.489 6.489 8 N -0.332 5.332 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.131 4.131 12 C -0.048 4.048 13 C -0.573 4.573 14 H 0.049 0.951 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.168 1.168 21 C -0.026 4.026 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.048 18.357 9.400 31.680 hybrid contribution 1.017 -0.461 0.021 1.117 sum -23.031 17.896 9.421 30.651 Atomic orbital electron populations 1.21911 0.93529 1.01601 1.02680 1.20183 0.96495 0.96431 0.93526 1.22189 1.01349 0.94342 1.03082 1.21268 0.92193 1.00647 0.99226 1.22154 0.97145 0.97624 1.00682 1.21352 0.78900 0.87763 0.82901 1.90706 1.47926 1.39927 1.70355 1.48043 1.54452 1.24973 1.05711 1.21477 0.92556 0.89937 0.96712 1.21818 0.95294 0.99120 0.99384 1.21256 0.95537 0.97200 0.99131 1.19524 0.94282 0.95748 0.95268 1.21549 0.96182 1.04412 1.35173 0.95056 1.26068 0.99051 0.99889 0.94497 1.70074 1.13009 1.35079 1.41152 0.85612 0.78378 0.80171 0.78204 1.19633 1.20494 1.16809 1.22325 0.92595 0.89406 0.98301 1.21876 0.94612 1.01171 0.98608 0.91872 0.91580 0.93516 0.91851 0.91282 0.91711 0.93575 0.88929 0.89013 0.86534 0.92487 0.88206 0.90647 0.94207 0.94315 0.92038 0.95710 0.97387 0.92440 0.88374 0.88279 0.88370 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.26 71.98 0.59 -0.57 16 2 C -0.07 -0.65 0.70 -52.92 -0.04 -0.68 16 3 C -0.15 -1.05 7.41 71.98 0.53 -0.52 16 4 C -0.10 -1.28 4.47 30.22 0.13 -1.14 16 5 C -0.14 -2.36 5.46 30.10 0.16 -2.20 16 6 C 0.50 13.68 6.79 88.10 0.60 14.28 16 7 O -0.61 -23.38 16.60 -3.06 -0.05 -23.43 16 8 N -0.60 -14.02 2.46 -821.14 -2.02 -16.04 16 9 C 0.12 3.24 5.32 86.38 0.46 3.70 16 10 C -0.12 -3.87 5.54 30.59 0.17 -3.70 16 11 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 12 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 13 C -0.54 -32.34 9.66 25.60 0.25 -32.10 16 14 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 15 C 0.00 0.09 5.47 84.65 0.46 0.55 16 16 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 17 Si 0.95 45.87 27.47 68.60 1.88 47.75 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 21 C 0.09 1.33 5.75 86.24 0.50 1.83 16 22 C -0.12 -1.40 4.55 30.25 0.14 -1.27 16 23 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.07 0.45 8.09 -2.39 -0.02 0.43 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.45 4.08 -2.39 -0.01 0.44 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.81 7.86 -2.39 -0.02 0.79 16 30 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.12 1.47 4.80 -2.39 -0.01 1.46 16 33 H 0.06 1.90 7.38 -2.39 -0.02 1.88 16 34 H 0.10 2.27 8.03 -2.38 -0.02 2.25 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.02 1.16 7.20 -2.39 -0.02 1.15 16 40 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 41 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.10 1.09 4.73 -2.39 -0.01 1.07 16 43 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 44 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 45 H 0.05 0.82 8.05 -2.39 -0.02 0.80 16 Total: -1.00 -76.97 341.28 5.23 -71.74 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.88 Total: 7.18 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.24 Total: -25.88 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.72 Total: -77.36 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -76.97 5.23 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.685 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds